| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is selB [H]
Identifier: 71907439
GI number: 71907439
Start: 1945025
End: 1946908
Strand: Reverse
Name: selB [H]
Synonym: Daro_1810
Alternate gene names: 71907439
Gene position: 1946908-1945025 (Counterclockwise)
Preceding gene: 71907440
Following gene: 71907438
Centisome position: 43.25
GC content: 66.77
Gene sequence:
>1884_bases ATGATCATCGGCACCGCCGGCCATATCGACCACGGCAAGACCACACTGGTCAAAGCCCTGACCGGCGTCGACTGTGACCG CCTGAAGGAAGAAAAGGCCCGCGGCATCACCGTCGACCTCGGCTACGCCTACACGCCGACGCTGGGTTTCATCGACGTGC CCGGTCACGAAAAGCTGATCCACAACATGCTGGCCGGCGCCACCGGCATCGATTTCGCCTTGCTCGTCATTGCCGCCGAT GACGGCCCAATGCCGCAGACGCGCGAGCATCTGGAAATCATCGAACTGCTCGGCATCAAGCGCGGCGCCGTGGCGCTGAC CAAGATCGATAATGCCTCGGCCGAACGCCAGCAACAGGCAAAAGCCGAAATCGCCGAATTGCTTGCCAGCACGGCCCTGG CCGATGCCCCAATCTTCCCGGTTGCCCCCATCAGCGGCGAAGGCATCGCCGAACTGCGCGCATATCTCGAAGAGCAATCC AGCCTCCCCTCGCCCGAACGCTTGAAGAAAGCCGGCGGCTTCCGCCTCGCCGTCGACCGCTGCTTCACCCTCTCCGGCGC CGGCACCGTCGTCACCGGCACCGCCTTCGCCGGCAGCGTCAAGGCCGGCGACCAGTTGCTGCTCTCGCCGCCCAACAAGC CAGTGCGTGTGCGCAGCCTGCGCGTGCAGGACGCCCCGGCCGAATCCGGCCACGCCGGGCAACGCATCGCCTTGGCGCTA TCCGGCATCGAAAAATCCGACGTCGAACGCGGTATGTGGATCCTTGCCCCGGCACTGCATTTCCCGGTCCGCCGATTCGA CGCCAAAATCCGCGTCCTCTCCGGCCAGCCGGCACTCAAGCACTGGACGCAGGTGCATTTGCACTTGGGCGCCGAAGACG TCCCGGCCCGTGTTGCTTTACTCGGCACAACCGAGATCGCCCCGGGCAGCGAACACTGGGCGCAAATCACCGTCGACCGC GAGATCGGCACACTGGCCGGCGACCGCTTCATCCTGCGCGATGCCTCGGCCCGCCACACCATCGGCGGCGGTCAGGTGCT CGACATCTTCCCGCCCAGCCGCAAGAAAGGCAGCCCGGAACGCCTGGCCATGCTCACCGCGCTGGCCGACGAAAACCCCG CCACCGCGCTGCAACTCGCCACCGAACAACAAACCGCTGGCGTCGAACTCGACACCTATGCGCTGAATCGAAATCTCGAC CCGGCCACGCTACAGACCATCACCGGCCAACTGAACCTCAAGCGGGTCGGCAATATCGCGTTCTCGCCAAGCCACTGGCT GGCCCTCGAAGCAAAGCTGCTCGCCGCGCTGGCCGCCGAACACGAACGCGCCCCGGACATGCCCGGCATCGAACGCGACC GCCTGCGCCGCCTGACGCTGCCGACGCTCTCCCGCCCGGCTTTCGATGCCTTGCTGGCCGAACCTTTGGCCAGCGGCCGC ATCGCCCAGACCAACGCCTGGCTGCACCTGCCGGAACACCGCGTGCAGATGGCCGCCAGCGACCGCGACCTGTGGCAAAC GCTGAAGCCGCTGCTCGATGCCGAACCCTATGGCCCGCCGCGCGTTCGCGATGTCGCAAAAGCCACCGGCATCGGCGAAG ACACCGTCCGCGCCCTGTTCAAGCGGGTCGCCCGCATCGGTGAGGCCTACCCGGTGGCGCATGACCACTACTTCACCGCC AGCGCCGTGGCCGCCCTCGCCCGCTACGTCGCTGCGCTCAACACCGAACACGGTTTCGCCCGCGCCGCCAGCCTGCGCGA CCAGATCGGCGGCGGCCGCAAGGTCGCCATCCACATCCTCGAATTCTTCGACCGCATCGGCTACACTCGCCGGGTGCGCG ACACCCACGTGCTGCGCGGTTCGCCGGAGCAATTCGGTTCATGA
Upstream 100 bases:
>100_bases ACTGGGTCGGCCGCGGTGGGCTGCGCGCCAATGTACTGACTTCCGGCCGGCTGGCTTGCGGCGATGCACTAGCTCCCGTC GAATCCGGAGAACAAGCAGC
Downstream 100 bases:
>100_bases ACAACGGAAGAGATCGTTCCCCGGTGGGACGGCCGGTCTTCAAAACCGGCAGGGCCTGTCAAACAGGCTTGGGTAGGTTC GACTCCTGCTCTCTTCCGCC
Product: selenocysteine-specific translation elongation factor SelB
Products: NA
Alternate protein names: SelB translation factor [H]
Number of amino acids: Translated: 627; Mature: 627
Protein sequence:
>627_residues MIIGTAGHIDHGKTTLVKALTGVDCDRLKEEKARGITVDLGYAYTPTLGFIDVPGHEKLIHNMLAGATGIDFALLVIAAD DGPMPQTREHLEIIELLGIKRGAVALTKIDNASAERQQQAKAEIAELLASTALADAPIFPVAPISGEGIAELRAYLEEQS SLPSPERLKKAGGFRLAVDRCFTLSGAGTVVTGTAFAGSVKAGDQLLLSPPNKPVRVRSLRVQDAPAESGHAGQRIALAL SGIEKSDVERGMWILAPALHFPVRRFDAKIRVLSGQPALKHWTQVHLHLGAEDVPARVALLGTTEIAPGSEHWAQITVDR EIGTLAGDRFILRDASARHTIGGGQVLDIFPPSRKKGSPERLAMLTALADENPATALQLATEQQTAGVELDTYALNRNLD PATLQTITGQLNLKRVGNIAFSPSHWLALEAKLLAALAAEHERAPDMPGIERDRLRRLTLPTLSRPAFDALLAEPLASGR IAQTNAWLHLPEHRVQMAASDRDLWQTLKPLLDAEPYGPPRVRDVAKATGIGEDTVRALFKRVARIGEAYPVAHDHYFTA SAVAALARYVAALNTEHGFARAASLRDQIGGGRKVAIHILEFFDRIGYTRRVRDTHVLRGSPEQFGS
Sequences:
>Translated_627_residues MIIGTAGHIDHGKTTLVKALTGVDCDRLKEEKARGITVDLGYAYTPTLGFIDVPGHEKLIHNMLAGATGIDFALLVIAAD DGPMPQTREHLEIIELLGIKRGAVALTKIDNASAERQQQAKAEIAELLASTALADAPIFPVAPISGEGIAELRAYLEEQS SLPSPERLKKAGGFRLAVDRCFTLSGAGTVVTGTAFAGSVKAGDQLLLSPPNKPVRVRSLRVQDAPAESGHAGQRIALAL SGIEKSDVERGMWILAPALHFPVRRFDAKIRVLSGQPALKHWTQVHLHLGAEDVPARVALLGTTEIAPGSEHWAQITVDR EIGTLAGDRFILRDASARHTIGGGQVLDIFPPSRKKGSPERLAMLTALADENPATALQLATEQQTAGVELDTYALNRNLD PATLQTITGQLNLKRVGNIAFSPSHWLALEAKLLAALAAEHERAPDMPGIERDRLRRLTLPTLSRPAFDALLAEPLASGR IAQTNAWLHLPEHRVQMAASDRDLWQTLKPLLDAEPYGPPRVRDVAKATGIGEDTVRALFKRVARIGEAYPVAHDHYFTA SAVAALARYVAALNTEHGFARAASLRDQIGGGRKVAIHILEFFDRIGYTRRVRDTHVLRGSPEQFGS >Mature_627_residues MIIGTAGHIDHGKTTLVKALTGVDCDRLKEEKARGITVDLGYAYTPTLGFIDVPGHEKLIHNMLAGATGIDFALLVIAAD DGPMPQTREHLEIIELLGIKRGAVALTKIDNASAERQQQAKAEIAELLASTALADAPIFPVAPISGEGIAELRAYLEEQS SLPSPERLKKAGGFRLAVDRCFTLSGAGTVVTGTAFAGSVKAGDQLLLSPPNKPVRVRSLRVQDAPAESGHAGQRIALAL SGIEKSDVERGMWILAPALHFPVRRFDAKIRVLSGQPALKHWTQVHLHLGAEDVPARVALLGTTEIAPGSEHWAQITVDR EIGTLAGDRFILRDASARHTIGGGQVLDIFPPSRKKGSPERLAMLTALADENPATALQLATEQQTAGVELDTYALNRNLD PATLQTITGQLNLKRVGNIAFSPSHWLALEAKLLAALAAEHERAPDMPGIERDRLRRLTLPTLSRPAFDALLAEPLASGR IAQTNAWLHLPEHRVQMAASDRDLWQTLKPLLDAEPYGPPRVRDVAKATGIGEDTVRALFKRVARIGEAYPVAHDHYFTA SAVAALARYVAALNTEHGFARAASLRDQIGGGRKVAIHILEFFDRIGYTRRVRDTHVLRGSPEQFGS
Specific function: Translation factor necessary for the incorporation of selenocysteine into proteins. It probably replaces EF-Tu for the insertion of selenocysteine directed by the UGA codon. SelB binds GTP and GDP [H]
COG id: COG3276
COG function: function code J; Selenocysteine-specific translation elongation factor
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. SelB subfamily [H]
Homologues:
Organism=Homo sapiens, GI34147630, Length=386, Percent_Identity=30.3108808290155, Blast_Score=149, Evalue=1e-35, Organism=Homo sapiens, GI223555963, Length=298, Percent_Identity=30.8724832214765, Blast_Score=126, Evalue=6e-29, Organism=Homo sapiens, GI5729864, Length=298, Percent_Identity=30.8724832214765, Blast_Score=126, Evalue=7e-29, Organism=Homo sapiens, GI54607086, Length=360, Percent_Identity=26.9444444444444, Blast_Score=124, Evalue=2e-28, Organism=Homo sapiens, GI194018520, Length=418, Percent_Identity=26.3157894736842, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI194097354, Length=418, Percent_Identity=26.3157894736842, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI194018522, Length=418, Percent_Identity=26.3157894736842, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI46094014, Length=418, Percent_Identity=26.0765550239234, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI4503507, Length=255, Percent_Identity=29.8039215686275, Blast_Score=101, Evalue=2e-21, Organism=Homo sapiens, GI82546879, Length=279, Percent_Identity=27.5985663082437, Blast_Score=95, Evalue=2e-19, Organism=Homo sapiens, GI45593140, Length=287, Percent_Identity=25.7839721254355, Blast_Score=86, Evalue=9e-17, Organism=Homo sapiens, GI4503475, Length=312, Percent_Identity=25, Blast_Score=84, Evalue=4e-16, Organism=Homo sapiens, GI4503471, Length=312, Percent_Identity=25.6410256410256, Blast_Score=82, Evalue=2e-15, Organism=Escherichia coli, GI2367247, Length=627, Percent_Identity=41.7862838915471, Blast_Score=437, Evalue=1e-123, Organism=Escherichia coli, GI1790412, Length=383, Percent_Identity=31.331592689295, Blast_Score=147, Evalue=3e-36, Organism=Escherichia coli, GI1789737, Length=383, Percent_Identity=31.331592689295, Blast_Score=147, Evalue=3e-36, Organism=Escherichia coli, GI1789108, Length=259, Percent_Identity=27.7992277992278, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1789559, Length=226, Percent_Identity=30.0884955752212, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI25141371, Length=376, Percent_Identity=28.4574468085106, Blast_Score=137, Evalue=2e-32, Organism=Caenorhabditis elegans, GI17556456, Length=393, Percent_Identity=28.7531806615776, Blast_Score=127, Evalue=1e-29, Organism=Caenorhabditis elegans, GI17565438, Length=331, Percent_Identity=26.2839879154079, Blast_Score=102, Evalue=9e-22, Organism=Caenorhabditis elegans, GI32566629, Length=420, Percent_Identity=25.952380952381, Blast_Score=101, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17509919, Length=258, Percent_Identity=28.2945736434109, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17506081, Length=252, Percent_Identity=28.968253968254, Blast_Score=96, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17552884, Length=312, Percent_Identity=25.6410256410256, Blast_Score=89, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17569207, Length=312, Percent_Identity=25.6410256410256, Blast_Score=89, Evalue=6e-18, Organism=Caenorhabditis elegans, GI115532067, Length=340, Percent_Identity=25.2941176470588, Blast_Score=83, Evalue=5e-16, Organism=Caenorhabditis elegans, GI115532065, Length=387, Percent_Identity=24.8062015503876, Blast_Score=82, Evalue=6e-16, Organism=Saccharomyces cerevisiae, GI6324761, Length=313, Percent_Identity=32.5878594249201, Blast_Score=130, Evalue=6e-31, Organism=Saccharomyces cerevisiae, GI6320863, Length=258, Percent_Identity=29.8449612403101, Blast_Score=101, Evalue=3e-22, Organism=Saccharomyces cerevisiae, GI6325337, Length=336, Percent_Identity=24.4047619047619, Blast_Score=86, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6319594, Length=336, Percent_Identity=24.4047619047619, Blast_Score=86, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6320377, Length=346, Percent_Identity=25.4335260115607, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI19921738, Length=385, Percent_Identity=31.9480519480519, Blast_Score=162, Evalue=7e-40, Organism=Drosophila melanogaster, GI281363316, Length=388, Percent_Identity=31.1855670103093, Blast_Score=157, Evalue=2e-38, Organism=Drosophila melanogaster, GI17864358, Length=388, Percent_Identity=31.1855670103093, Blast_Score=157, Evalue=2e-38, Organism=Drosophila melanogaster, GI19922690, Length=339, Percent_Identity=32.1533923303835, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI24647046, Length=255, Percent_Identity=29.8039215686275, Blast_Score=108, Evalue=1e-23, Organism=Drosophila melanogaster, GI24647048, Length=255, Percent_Identity=29.8039215686275, Blast_Score=108, Evalue=1e-23, Organism=Drosophila melanogaster, GI45550900, Length=304, Percent_Identity=27.3026315789474, Blast_Score=102, Evalue=7e-22, Organism=Drosophila melanogaster, GI17137380, Length=358, Percent_Identity=27.9329608938547, Blast_Score=101, Evalue=2e-21, Organism=Drosophila melanogaster, GI24652838, Length=313, Percent_Identity=25.2396166134185, Blast_Score=87, Evalue=4e-17, Organism=Drosophila melanogaster, GI17137572, Length=313, Percent_Identity=25.2396166134185, Blast_Score=87, Evalue=4e-17, Organism=Drosophila melanogaster, GI19922512, Length=321, Percent_Identity=23.6760124610592, Blast_Score=86, Evalue=8e-17, Organism=Drosophila melanogaster, GI24654852, Length=321, Percent_Identity=23.6760124610592, Blast_Score=86, Evalue=8e-17, Organism=Drosophila melanogaster, GI45553807, Length=338, Percent_Identity=24.5562130177515, Blast_Score=86, Evalue=1e-16, Organism=Drosophila melanogaster, GI45553816, Length=338, Percent_Identity=24.5562130177515, Blast_Score=86, Evalue=1e-16, Organism=Drosophila melanogaster, GI24651721, Length=338, Percent_Identity=24.5562130177515, Blast_Score=86, Evalue=1e-16, Organism=Drosophila melanogaster, GI17864154, Length=338, Percent_Identity=24.5562130177515, Blast_Score=86, Evalue=1e-16, Organism=Drosophila melanogaster, GI28572034, Length=169, Percent_Identity=33.7278106508876, Blast_Score=74, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015190 - InterPro: IPR015191 - InterPro: IPR000795 - InterPro: IPR004161 - InterPro: IPR009000 - InterPro: IPR004535 - InterPro: IPR011991 [H]
Pfam domain/function: PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2; PF09106 SelB-wing_2; PF09107 SelB-wing_3 [H]
EC number: NA
Molecular weight: Translated: 67625; Mature: 67625
Theoretical pI: Translated: 7.95; Mature: 7.95
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIGTAGHIDHGKTTLVKALTGVDCDRLKEEKARGITVDLGYAYTPTLGFIDVPGHEKLI CEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCEEEEECCEECCCCCEEECCCHHHHH HNMLAGATGIDFALLVIAADDGPMPQTREHLEIIELLGIKRGAVALTKIDNASAERQQQA HHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHH KAEIAELLASTALADAPIFPVAPISGEGIAELRAYLEEQSSLPSPERLKKAGGFRLAVDR HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEH CFTLSGAGTVVTGTAFAGSVKAGDQLLLSPPNKPVRVRSLRVQDAPAESGHAGQRIALAL EEEECCCCCEEECCCEECCCCCCCEEEECCCCCCEEEEEEEEECCCCCCCCCCCEEEEEE SGIEKSDVERGMWILAPALHFPVRRFDAKIRVLSGQPALKHWTQVHLHLGAEDVPARVAL CCCCHHHHHCCEEEEEHHHHHHHHHHCCEEEEECCCHHHHHHEEEEEEECCCCCCCEEEE LGTTEIAPGSEHWAQITVDREIGTLAGDRFILRDASARHTIGGGQVLDIFPPSRKKGSPE EECCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEECCCCEEEECCCCCCCCCCHH RLAMLTALADENPATALQLATEQQTAGVELDTYALNRNLDPATLQTITGQLNLKRVGNIA HHHHHHHHCCCCCCCEEEEECCHHHCCCEEEEEEECCCCCHHHHHHHHCCEEEEECCCEE FSPSHWLALEAKLLAALAAEHERAPDMPGIERDRLRRLTLPTLSRPAFDALLAEPLASGR ECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCC IAQTNAWLHLPEHRVQMAASDRDLWQTLKPLLDAEPYGPPRVRDVAKATGIGEDTVRALF EEECCCEEECCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHH KRVARIGEAYPVAHDHYFTASAVAALARYVAALNTEHGFARAASLRDQIGGGRKVAIHIL HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHH EFFDRIGYTRRVRDTHVLRGSPEQFGS HHHHHCCCHHCCCCCCEECCCHHHHCC >Mature Secondary Structure MIIGTAGHIDHGKTTLVKALTGVDCDRLKEEKARGITVDLGYAYTPTLGFIDVPGHEKLI CEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCEEEEECCEECCCCCEEECCCHHHHH HNMLAGATGIDFALLVIAADDGPMPQTREHLEIIELLGIKRGAVALTKIDNASAERQQQA HHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHH KAEIAELLASTALADAPIFPVAPISGEGIAELRAYLEEQSSLPSPERLKKAGGFRLAVDR HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEH CFTLSGAGTVVTGTAFAGSVKAGDQLLLSPPNKPVRVRSLRVQDAPAESGHAGQRIALAL EEEECCCCCEEECCCEECCCCCCCEEEECCCCCCEEEEEEEEECCCCCCCCCCCEEEEEE SGIEKSDVERGMWILAPALHFPVRRFDAKIRVLSGQPALKHWTQVHLHLGAEDVPARVAL CCCCHHHHHCCEEEEEHHHHHHHHHHCCEEEEECCCHHHHHHEEEEEEECCCCCCCEEEE LGTTEIAPGSEHWAQITVDREIGTLAGDRFILRDASARHTIGGGQVLDIFPPSRKKGSPE EECCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEECCCCEEEECCCCCCCCCCHH RLAMLTALADENPATALQLATEQQTAGVELDTYALNRNLDPATLQTITGQLNLKRVGNIA HHHHHHHHCCCCCCCEEEEECCHHHCCCEEEEEEECCCCCHHHHHHHHCCEEEEECCCEE FSPSHWLALEAKLLAALAAEHERAPDMPGIERDRLRRLTLPTLSRPAFDALLAEPLASGR ECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCC IAQTNAWLHLPEHRVQMAASDRDLWQTLKPLLDAEPYGPPRVRDVAKATGIGEDTVRALF EEECCCEEECCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHH KRVARIGEAYPVAHDHYFTASAVAALARYVAALNTEHGFARAASLRDQIGGGRKVAIHIL HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHH EFFDRIGYTRRVRDTHVLRGSPEQFGS HHHHHCCCHHCCCCCCEECCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2531290; 8041620; 9278503; 2140572 [H]