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The map label for this gene is ydcP [H]

Identifier: 71907426

GI number: 71907426

Start: 1932366

End: 1934255

Strand: Reverse

Name: ydcP [H]

Synonym: Daro_1796

Alternate gene names: 71907426

Gene position: 1934255-1932366 (Counterclockwise)

Preceding gene: 71907427

Following gene: 71907425

Centisome position: 42.97

GC content: 59.52

Gene sequence:

>1890_bases
ATGACTCGAATTCAACACCCTCTCGAACTCCTCGCGCCGGCCAAGAATGCCGATTTCGGCATTGAAGCCATCAAGCACGG
GGCCGATGCCGTCTATATCGGCGGCCCGACTTTCGGCGCCCGTTACGGCGCCGGCAACAGCGTCGCTGAAATCCGACGCC
TGTGTGATTTTGCCCACCGCTACCGGGCAAAAGTCTTCGTCGCGCTGAACACCATCCTGCACGACGACGAACTGGAAGGT
GCCCGACAGCTGGCCTGGGAACTCTATGAAGCTGGCACCGATGCGCTGATCATTCAGGACATGGGGCTGCTCGAAACCGA
CCTGCCGCCGATCCAGTTGCACGCCAGCACGCAAACTGACAACCGCAACCCGGCCAAGGTGAAGTTCCTCGAAGATGCCG
GTTTTTCGCAAGTGGTCCTGGCCCGCGAAATGTCGATCCAGGAAGTCCATGCCGTCGCCAGCGAAACCACCCTCGCCCTC
GAATACTTTGTGCATGGCGCGCTGTGCGTCGCCTTTAGCGGCCAGTGCTACATCAGCCAGGCCCACACCGGGCGCAGCGC
CAATCGCGGCGAATGCTCGCAGGCCTGCCGCCTGCCCTACACGCTGGTCGACGACAAGGGCAAGACGATCACCGAGAACC
AGCATCTGCTGTCGATGAAGGACAACAACCAGACCGACAACATGCTGGAACTGGCCCGTGCCGGGGTCAGTTCGTTCAAG
ATCGAGGGGCGCTTGAAAGACCTCTCCTACGTCAAGAACATCACGGCGCATTACCGCACGCTGCTCGACGAGATCATCGC
CAACAACCCGGAATTCAGTCGAGCTTCCAGCGGCCACAGCACTTTCTCCTTCACGCCGCAGCCGGACAAAACCTTCAATC
GTGGCTATACCGATTACTTTGCCGGTGGCCGGCAGGACGACATTGGTGCCTTCGATTCGCCAGCCTTCGTTGGCGAGTTG
ATTGGTGAGGTAGCCGATATCGGCGATGGCTGGTTCATGGTCAATACCGACCAGGATTTCCACAACGGCGACGGCGTCTG
CTTCTACGACGCCAATGGCGACGTACTCGGCATGCGCATCAACCGGGCCGAAGGCAAGAAACTGTTCCCGGCCGAAATGC
CGGAAGAACTGACCGAAGGCGCCACGCTGTTCCGCAACCGCGACCAGGAATTCGAACGGGCGCTGGAAAAGGACTCGGCC
GACCGGCGCATTTCGGTGAAGCCGGTTTTCTCTGAAACCGCCAATGGCTTCCGCCTGACGCTGACAGACGAAGATGGCGT
GACCGTTGGCGTTGATCTGCCGAAAAGCGAGAAAATCGGCCGCGAAGTTGCCCAGAACGCCGATCAGGCACTGGCCAAAC
TCAAGGAAAATCTCGGCAAGTTTGGCAACACCATGTTTGTCGCAGAGCCGGTCGAACTGCAATTGTCGCAGCCTTGGTTT
CTGCCGGTCAGTGCGATCAACGCCCTGCGCCGCGAAGCGACCGAAAAGCTCGAAGCCGCCCGTCTCGCCAGCCACCCGCG
CCCGCCGCGCGCCCAGCCGGCCGACCATCCGGTGCCCTACCCACAGGACGAGCTGACCTATCTCGGCAACGTCTTTAACG
CCAAGGCACGCGCCTTCTATGAAAAACATGGCGTCAAGCTGATCGAGGAAGCCTACGAGGCCGGCAACGAAAAAGGCATG
GTCTCGCTGATGATCACCCGCCACTGCCTGCGCTACAGCTTCAATCTGTGCCCGAAGGAAGTTAAGCACCTGAAGCCGGA
CCCGATGACGCTGGTCAATGGCAACGAAAAGCTGATCCTCAAGTTCGACTGCAAGGCTTGCGAAATGCACGTCATCGGCA
AGATGAAAAAGGGCGTCAAACTGAACCTGGGAACCATTCGTCCGGCATAA

Upstream 100 bases:

>100_bases
GCGCGGCAATCCTCGCAAGAATGCCCGCGAACGGGCCGAGGCCATCCTGCGTGAGTTCAATATCGAAGAACTTACCCCTC
GTTTTGCGTACTAAGGCGCC

Downstream 100 bases:

>100_bases
TATCGGCATGAAGCCGCTGCCCTGCCCGTCCTGCCGACAAACGATGACCAAGCACCGCTTCGAGCGGCTGCTGCACGGCG
AGGTCGTTCTCGACCTCTGC

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 629; Mature: 628

Protein sequence:

>629_residues
MTRIQHPLELLAPAKNADFGIEAIKHGADAVYIGGPTFGARYGAGNSVAEIRRLCDFAHRYRAKVFVALNTILHDDELEG
ARQLAWELYEAGTDALIIQDMGLLETDLPPIQLHASTQTDNRNPAKVKFLEDAGFSQVVLAREMSIQEVHAVASETTLAL
EYFVHGALCVAFSGQCYISQAHTGRSANRGECSQACRLPYTLVDDKGKTITENQHLLSMKDNNQTDNMLELARAGVSSFK
IEGRLKDLSYVKNITAHYRTLLDEIIANNPEFSRASSGHSTFSFTPQPDKTFNRGYTDYFAGGRQDDIGAFDSPAFVGEL
IGEVADIGDGWFMVNTDQDFHNGDGVCFYDANGDVLGMRINRAEGKKLFPAEMPEELTEGATLFRNRDQEFERALEKDSA
DRRISVKPVFSETANGFRLTLTDEDGVTVGVDLPKSEKIGREVAQNADQALAKLKENLGKFGNTMFVAEPVELQLSQPWF
LPVSAINALRREATEKLEAARLASHPRPPRAQPADHPVPYPQDELTYLGNVFNAKARAFYEKHGVKLIEEAYEAGNEKGM
VSLMITRHCLRYSFNLCPKEVKHLKPDPMTLVNGNEKLILKFDCKACEMHVIGKMKKGVKLNLGTIRPA

Sequences:

>Translated_629_residues
MTRIQHPLELLAPAKNADFGIEAIKHGADAVYIGGPTFGARYGAGNSVAEIRRLCDFAHRYRAKVFVALNTILHDDELEG
ARQLAWELYEAGTDALIIQDMGLLETDLPPIQLHASTQTDNRNPAKVKFLEDAGFSQVVLAREMSIQEVHAVASETTLAL
EYFVHGALCVAFSGQCYISQAHTGRSANRGECSQACRLPYTLVDDKGKTITENQHLLSMKDNNQTDNMLELARAGVSSFK
IEGRLKDLSYVKNITAHYRTLLDEIIANNPEFSRASSGHSTFSFTPQPDKTFNRGYTDYFAGGRQDDIGAFDSPAFVGEL
IGEVADIGDGWFMVNTDQDFHNGDGVCFYDANGDVLGMRINRAEGKKLFPAEMPEELTEGATLFRNRDQEFERALEKDSA
DRRISVKPVFSETANGFRLTLTDEDGVTVGVDLPKSEKIGREVAQNADQALAKLKENLGKFGNTMFVAEPVELQLSQPWF
LPVSAINALRREATEKLEAARLASHPRPPRAQPADHPVPYPQDELTYLGNVFNAKARAFYEKHGVKLIEEAYEAGNEKGM
VSLMITRHCLRYSFNLCPKEVKHLKPDPMTLVNGNEKLILKFDCKACEMHVIGKMKKGVKLNLGTIRPA
>Mature_628_residues
TRIQHPLELLAPAKNADFGIEAIKHGADAVYIGGPTFGARYGAGNSVAEIRRLCDFAHRYRAKVFVALNTILHDDELEGA
RQLAWELYEAGTDALIIQDMGLLETDLPPIQLHASTQTDNRNPAKVKFLEDAGFSQVVLAREMSIQEVHAVASETTLALE
YFVHGALCVAFSGQCYISQAHTGRSANRGECSQACRLPYTLVDDKGKTITENQHLLSMKDNNQTDNMLELARAGVSSFKI
EGRLKDLSYVKNITAHYRTLLDEIIANNPEFSRASSGHSTFSFTPQPDKTFNRGYTDYFAGGRQDDIGAFDSPAFVGELI
GEVADIGDGWFMVNTDQDFHNGDGVCFYDANGDVLGMRINRAEGKKLFPAEMPEELTEGATLFRNRDQEFERALEKDSAD
RRISVKPVFSETANGFRLTLTDEDGVTVGVDLPKSEKIGREVAQNADQALAKLKENLGKFGNTMFVAEPVELQLSQPWFL
PVSAINALRREATEKLEAARLASHPRPPRAQPADHPVPYPQDELTYLGNVFNAKARAFYEKHGVKLIEEAYEAGNEKGMV
SLMITRHCLRYSFNLCPKEVKHLKPDPMTLVNGNEKLILKFDCKACEMHVIGKMKKGVKLNLGTIRPA

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=631, Percent_Identity=52.4564183835182, Blast_Score=650, Evalue=0.0,
Organism=Escherichia coli, GI1789548, Length=315, Percent_Identity=31.4285714285714, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1788397, Length=374, Percent_Identity=28.8770053475936, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 69765; Mature: 69634

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRIQHPLELLAPAKNADFGIEAIKHGADAVYIGGPTFGARYGAGNSVAEIRRLCDFAHR
CCCCCCCHHHHCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
YRAKVFVALNTILHDDELEGARQLAWELYEAGTDALIIQDMGLLETDLPPIQLHASTQTD
HHHEEEEEEHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCEEEEECCCCC
NRNPAKVKFLEDAGFSQVVLAREMSIQEVHAVASETTLALEYFVHGALCVAFSGQCYISQ
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEE
AHTGRSANRGECSQACRLPYTLVDDKGKTITENQHLLSMKDNNQTDNMLELARAGVSSFK
CCCCCCCCCCCHHHHHCCCEEEECCCCCEECCCCEEEEECCCCCCHHHHHHHHCCHHHEE
IEGRLKDLSYVKNITAHYRTLLDEIIANNPEFSRASSGHSTFSFTPQPDKTFNRGYTDYF
ECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHCCCCHHHH
AGGRQDDIGAFDSPAFVGELIGEVADIGDGWFMVNTDQDFHNGDGVCFYDANGDVLGMRI
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCEEEEEE
NRAEGKKLFPAEMPEELTEGATLFRNRDQEFERALEKDSADRRISVKPVFSETANGFRLT
ECCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEECHHCCCCCEEEE
LTDEDGVTVGVDLPKSEKIGREVAQNADQALAKLKENLGKFGNTMFVAEPVELQLSQPWF
EECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCE
LPVSAINALRREATEKLEAARLASHPRPPRAQPADHPVPYPQDELTYLGNVFNAKARAFY
EHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
EKHGVKLIEEAYEAGNEKGMVSLMITRHCLRYSFNLCPKEVKHLKPDPMTLVNGNEKLIL
HHHCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEECCCCEEEE
KFDCKACEMHVIGKMKKGVKLNLGTIRPA
EECCCHHHHHHHHHHCCCCEEECCCCCCC
>Mature Secondary Structure 
TRIQHPLELLAPAKNADFGIEAIKHGADAVYIGGPTFGARYGAGNSVAEIRRLCDFAHR
CCCCCCHHHHCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
YRAKVFVALNTILHDDELEGARQLAWELYEAGTDALIIQDMGLLETDLPPIQLHASTQTD
HHHEEEEEEHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCEEEEECCCCC
NRNPAKVKFLEDAGFSQVVLAREMSIQEVHAVASETTLALEYFVHGALCVAFSGQCYISQ
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEE
AHTGRSANRGECSQACRLPYTLVDDKGKTITENQHLLSMKDNNQTDNMLELARAGVSSFK
CCCCCCCCCCCHHHHHCCCEEEECCCCCEECCCCEEEEECCCCCCHHHHHHHHCCHHHEE
IEGRLKDLSYVKNITAHYRTLLDEIIANNPEFSRASSGHSTFSFTPQPDKTFNRGYTDYF
ECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHCCCCHHHH
AGGRQDDIGAFDSPAFVGELIGEVADIGDGWFMVNTDQDFHNGDGVCFYDANGDVLGMRI
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCEEEEEE
NRAEGKKLFPAEMPEELTEGATLFRNRDQEFERALEKDSADRRISVKPVFSETANGFRLT
ECCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEECHHCCCCCEEEE
LTDEDGVTVGVDLPKSEKIGREVAQNADQALAKLKENLGKFGNTMFVAEPVELQLSQPWF
EECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCE
LPVSAINALRREATEKLEAARLASHPRPPRAQPADHPVPYPQDELTYLGNVFNAKARAFY
EHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
EKHGVKLIEEAYEAGNEKGMVSLMITRHCLRYSFNLCPKEVKHLKPDPMTLVNGNEKLIL
HHHCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEECCCCEEEE
KFDCKACEMHVIGKMKKGVKLNLGTIRPA
EECCCHHHHHHHHHHCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]