| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is 71907336
Identifier: 71907336
GI number: 71907336
Start: 1832645
End: 1833574
Strand: Reverse
Name: 71907336
Synonym: Daro_1706
Alternate gene names: NA
Gene position: 1833574-1832645 (Counterclockwise)
Preceding gene: 71907337
Following gene: 71907335
Centisome position: 40.74
GC content: 49.25
Gene sequence:
>930_bases ATGAAAATCGTTCTCCCTGGCGGAGCTGGTTTAGTCGGTCAAAATTTAGTGGCTCGGCTAAAATCGAAAGGCTACTCAAA CATCGTTGTGCTCGATAAACATCGTGCCAACATTGAAGTGCTCAAACGGGTACAGCCCGACATCACTGTTGAATACGCGG ATCTTGCCGAACCGGGTGACTGGCAACGACATTTCGTTAGCGCTGATGTAGTCGTGATGCTGCAGGCACAGATTGGCGGC AACGACTATCAGGAATTCGTGCGCAACAACATTGATTCAACCCGGCTGGTTCTAGAAACTATCAAAGCTAATGATGTGCC TTATCTGGTGCACATCAGCTCCTCGGTTGTGGAGTCAGTCGCCGACGATTTCTATACCAAGACCAAGAAAGACCAGGAAA AAATGGTATTGGAAAGCGGAATTGTTTGCCCAGTGCTACGCCCTACACTGATGTTTGGTTGGTTCGACCGAAAGCACTTG GGTTGGTTGTCACGCTTTATGAAGAAGGTGCCAGTGTTCCCTATTCCCGGCCATGGGCGTTATATGCGCCAGCCACTGTA TGTTGGTGATTTCGCTAATATCATCATAAGCTGCATCGAGAATCGCGTGCGCGATGGCGTCCACAACATCTCCGGCCATG AAAAGATTGATTACATCGACATGATTCGCGAGATCAAAGAGGCGACCCGGGTCAATACACTGATTTTGCGCATTCCGTAT TCGCTTTTTTATGCGCTGTTATGGGTTTGGGGCTTGTTTGATAAGAATCCACCTTTTACCACCCAGCAACTAGCGGCTTT GAGTGCGAAGGATGAGTTTGAGGTGATCGATTGGCCCGGTATTTTCGGTGTCCCCTACACCCCGTTCAAAGCTGCTGTGG ATGAGACCTTCAACGATCCGCGCTACAGCGGTGTAGTGCTGGAGTTTTGA
Upstream 100 bases:
>100_bases GTAAGGCTCTGCCAGATAGTTTTATCGCGACTTTCCGAGATAATGGCGAAAACCGGGGCGAATGGTCTGCCATAGCTGTT TTAGCGTCTGAGGTTGTAAA
Downstream 100 bases:
>100_bases GATGGGGCAGAGAATTGCCGTTTTAGGTGCTGGCCCCATGGGTTTGGCAGTCGCTTACCAGTTGGCACTCGATGGGCACC GGCCGGTACTGTTCGAAGCA
Product: NAD-dependent epimerase/dehydratase:3-beta hydroxysteroid dehydrogenase/isomerase:dTDP-4-dehydrorhamnose reductase
Products: NA
Alternate protein names: NADH-Ubiquinone Oxidoreductase; NAD Dependent Epimerase/Dehydratase/Dehydrogenase; NADH Dehydrogenase; NADH Dehydrogenase/Oxidoreductase-Like Protein; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; Oxidoreductase; NADH Dehydrogenase 1 Alpha Subcomplex; Nucleoside-Diphosphate-Sugar Epimerase; Transmembrane Oxidoreductase Protein; Methyltransferase FkbM; NADH Dehydrogenase-Like Protein; Nucleoside-Diphosphate Sugar Epimerase; NADH-Ubiquinone Oxidoreductase -Like Protein; NAD Dependent Epimerase/Dehydratase Family Protein; 3-Beta-Hydroxy-Delta(5)-Steroid Dehydrogenase; NADH-Ubiquinone Oxidoreductase Putativ
Number of amino acids: Translated: 309; Mature: 309
Protein sequence:
>309_residues MKIVLPGGAGLVGQNLVARLKSKGYSNIVVLDKHRANIEVLKRVQPDITVEYADLAEPGDWQRHFVSADVVVMLQAQIGG NDYQEFVRNNIDSTRLVLETIKANDVPYLVHISSSVVESVADDFYTKTKKDQEKMVLESGIVCPVLRPTLMFGWFDRKHL GWLSRFMKKVPVFPIPGHGRYMRQPLYVGDFANIIISCIENRVRDGVHNISGHEKIDYIDMIREIKEATRVNTLILRIPY SLFYALLWVWGLFDKNPPFTTQQLAALSAKDEFEVIDWPGIFGVPYTPFKAAVDETFNDPRYSGVVLEF
Sequences:
>Translated_309_residues MKIVLPGGAGLVGQNLVARLKSKGYSNIVVLDKHRANIEVLKRVQPDITVEYADLAEPGDWQRHFVSADVVVMLQAQIGG NDYQEFVRNNIDSTRLVLETIKANDVPYLVHISSSVVESVADDFYTKTKKDQEKMVLESGIVCPVLRPTLMFGWFDRKHL GWLSRFMKKVPVFPIPGHGRYMRQPLYVGDFANIIISCIENRVRDGVHNISGHEKIDYIDMIREIKEATRVNTLILRIPY SLFYALLWVWGLFDKNPPFTTQQLAALSAKDEFEVIDWPGIFGVPYTPFKAAVDETFNDPRYSGVVLEF >Mature_309_residues MKIVLPGGAGLVGQNLVARLKSKGYSNIVVLDKHRANIEVLKRVQPDITVEYADLAEPGDWQRHFVSADVVVMLQAQIGG NDYQEFVRNNIDSTRLVLETIKANDVPYLVHISSSVVESVADDFYTKTKKDQEKMVLESGIVCPVLRPTLMFGWFDRKHL GWLSRFMKKVPVFPIPGHGRYMRQPLYVGDFANIIISCIENRVRDGVHNISGHEKIDYIDMIREIKEATRVNTLILRIPY SLFYALLWVWGLFDKNPPFTTQQLAALSAKDEFEVIDWPGIFGVPYTPFKAAVDETFNDPRYSGVVLEF
Specific function: Unknown
COG id: COG0702
COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35178; Mature: 35178
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIVLPGGAGLVGQNLVARLKSKGYSNIVVLDKHRANIEVLKRVQPDITVEYADLAEPGD CEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCEEEECCCCCCCC WQRHFVSADVVVMLQAQIGGNDYQEFVRNNIDSTRLVLETIKANDVPYLVHISSSVVESV HHHHHHCCCEEEEEEEHHCCCHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHH ADDFYTKTKKDQEKMVLESGIVCPVLRPTLMFGWFDRKHLGWLSRFMKKVPVFPIPGHGR HHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCH YMRQPLYVGDFANIIISCIENRVRDGVHNISGHEKIDYIDMIREIKEATRVNTLILRIPY HHCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEEHHH SLFYALLWVWGLFDKNPPFTTQQLAALSAKDEFEVIDWPGIFGVPYTPFKAAVDETFNDP HHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCC RYSGVVLEF CCCCEEEEC >Mature Secondary Structure MKIVLPGGAGLVGQNLVARLKSKGYSNIVVLDKHRANIEVLKRVQPDITVEYADLAEPGD CEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCEEEECCCCCCCC WQRHFVSADVVVMLQAQIGGNDYQEFVRNNIDSTRLVLETIKANDVPYLVHISSSVVESV HHHHHHCCCEEEEEEEHHCCCHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHH ADDFYTKTKKDQEKMVLESGIVCPVLRPTLMFGWFDRKHLGWLSRFMKKVPVFPIPGHGR HHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCH YMRQPLYVGDFANIIISCIENRVRDGVHNISGHEKIDYIDMIREIKEATRVNTLILRIPY HHCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEEHHH SLFYALLWVWGLFDKNPPFTTQQLAALSAKDEFEVIDWPGIFGVPYTPFKAAVDETFNDP HHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCC RYSGVVLEF CCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA