Click here to switch to the map view.

The map label for this gene is slmA [H]

Identifier: 71907304

GI number: 71907304

Start: 1799787

End: 1800392

Strand: Reverse

Name: slmA [H]

Synonym: Daro_1674

Alternate gene names: 71907304

Gene position: 1800392-1799787 (Counterclockwise)

Preceding gene: 71907305

Following gene: 71907303

Centisome position: 40.0

GC content: 57.1

Gene sequence:

>606_bases
ATGTCTCTCAATCCTCGCCAATCAACCGAGTCCCGTCAGGCAGAAATCATCGCCACCTTGGTGGCCTTGGCTGCCGAACG
AAACCCGGCCGACGTCACGACGACAGACATCGCCAAGGCGATGAACGTGACTCAGGGAGCACTGTTCCGCCACTTCCCGA
CCAAGGAAGCGATACGGCTTGCGGTTATCGAGTGGATAGAAGCGCAACTGATGGCCAAACTCGGGGATGCACAGTTGTCT
GCCCCCGATGTCTTGAACGGCCTGGAAGCAATGTTCCTGGCGCACGTGAAATTCATACGTGAATTCCCTGGCGTTCCACG
CCTGGTCTTTGCCGAACTCCAGCAACCGGATAGTTCGCCCGTGCGGCAGCGCGTGCAACAAATCATGCAGCGCTATCGGC
AGATGTTGACTGAAACCTTAGGTAAAGCCAGGGATGCCCAGCTGATAAGAGACGATGTGGATGTCCGGGCTGCCGCTGCG
CTATTTCTCGGCGCCATCCAGGGTTTGGTGATGCAGTCCATGCTCGTTGGCGTCTCACCTGATACCGAAGAGCCGGTACT
TGGCGTTCTACACCTCTACCTTGCCGGCCTGAGAGCCAAATCATGA

Upstream 100 bases:

>100_bases
ATCAGGCTTTGAACAAAGCGTTGCGATTGGTGCACAGAGCATTAGACAAAACTAATTTGGTGGCTATACTTGTAAGTAAC
TTATTACATACAAGACAACC

Downstream 100 bases:

>100_bases
AACCCAGCCAGGTCATTAGCCGAAAGCTTGGACTCGGGCTTTTTGCCGCAATGCTTGTCGTTGGATTTGGCGTGATTGTC
GCCCGCTCAGGTCCGTTATC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MSLNPRQSTESRQAEIIATLVALAAERNPADVTTTDIAKAMNVTQGALFRHFPTKEAIRLAVIEWIEAQLMAKLGDAQLS
APDVLNGLEAMFLAHVKFIREFPGVPRLVFAELQQPDSSPVRQRVQQIMQRYRQMLTETLGKARDAQLIRDDVDVRAAAA
LFLGAIQGLVMQSMLVGVSPDTEEPVLGVLHLYLAGLRAKS

Sequences:

>Translated_201_residues
MSLNPRQSTESRQAEIIATLVALAAERNPADVTTTDIAKAMNVTQGALFRHFPTKEAIRLAVIEWIEAQLMAKLGDAQLS
APDVLNGLEAMFLAHVKFIREFPGVPRLVFAELQQPDSSPVRQRVQQIMQRYRQMLTETLGKARDAQLIRDDVDVRAAAA
LFLGAIQGLVMQSMLVGVSPDTEEPVLGVLHLYLAGLRAKS
>Mature_200_residues
SLNPRQSTESRQAEIIATLVALAAERNPADVTTTDIAKAMNVTQGALFRHFPTKEAIRLAVIEWIEAQLMAKLGDAQLSA
PDVLNGLEAMFLAHVKFIREFPGVPRLVFAELQQPDSSPVRQRVQQIMQRYRQMLTETLGKARDAQLIRDDVDVRAAAAL
FLGAIQGLVMQSMLVGVSPDTEEPVLGVLHLYLAGLRAKS

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22114; Mature: 21983

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLNPRQSTESRQAEIIATLVALAAERNPADVTTTDIAKAMNVTQGALFRHFPTKEAIRL
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
AVIEWIEAQLMAKLGDAQLSAPDVLNGLEAMFLAHVKFIREFPGVPRLVFAELQQPDSSP
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCH
VRQRVQQIMQRYRQMLTETLGKARDAQLIRDDVDVRAAAALFLGAIQGLVMQSMLVGVSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DTEEPVLGVLHLYLAGLRAKS
CCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLNPRQSTESRQAEIIATLVALAAERNPADVTTTDIAKAMNVTQGALFRHFPTKEAIRL
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
AVIEWIEAQLMAKLGDAQLSAPDVLNGLEAMFLAHVKFIREFPGVPRLVFAELQQPDSSP
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCH
VRQRVQQIMQRYRQMLTETLGKARDAQLIRDDVDVRAAAALFLGAIQGLVMQSMLVGVSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DTEEPVLGVLHLYLAGLRAKS
CCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA