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The map label for this gene is intZ [H]

Identifier: 71907305

GI number: 71907305

Start: 1800686

End: 1801945

Strand: Reverse

Name: intZ [H]

Synonym: Daro_1675

Alternate gene names: 71907305

Gene position: 1801945-1800686 (Counterclockwise)

Preceding gene: 71907311

Following gene: 71907304

Centisome position: 40.03

GC content: 54.13

Gene sequence:

>1260_bases
ATGGCACGCCAGATCGGAAAGCTCACCGCGCTTCAAGTCACCAAGCTAACCAAGCCAGGTTTGTATGGTGACGGTGGCGG
ACTCACTCTGCAGATTACCAGCCGAAGCTCTAAAAGCTGGCTCTTCCGCTTCATGAAGGATGGCAAGTCCTACGGCATGG
GATTAGGTCCCACACACACGGTGAGTTTAGCTGAAGCGCGACAAAAAGCACTCGATGCCCGGAAGCTACTGACCGAAGGT
ATTAACCCACTCACCGCCAAGAAAGAACGGGCCATTGCAGAGCAATTGACCAGGGCGCGTACGATTTCCTTCGATCAATG
CGCAGAAGCCTATATCAATGCCCACAAGGCTAGCTGGAAAAATGCAAAGCACGCGGATCAGTGGACGAATACGCTGAACA
CCTACGCCAGCCCGATCTTCGGCAAGCTCCCCGTCGCCGAAGTGGATACGCCATTGGTCGTGAAATGTCTCTCTGCTATC
TGGCAAACCAAAACTGAGACTGCAACTCGTGTTCGTGGACGAATTGAATCGGTCTTGGATTGGGCCACAACCAGTGGTTA
CCGATCCGGTGAGAATCCGGCCCGCTGGAAAGGCCATCTTGAAAACCTGCTGGCGACAATCTCCAAAACAAGCCGAACGA
AGCATCATGCATCCCTGCCCTGGCAACAAGTTGCTACATTCATGTCCGACCTCAAATCGCGGGAAGGAACGGCTGCACGA
GCGCTTGAATTGGTGATCTTGACCGCTTGCCGATCGGGGGAGGTTCGGGGAGCAAAATGGTCGGAATTCGACCGAAAGAA
CAAAATCTGGACGATTCCAGCAGAACGCATGAAGGCCAAACGGGAGCATGAAGTTCCGCTCTCGGCGCAAGCGCTTGAAC
TGCTCAAGCGCCTGCCGGAGGATGGAGAATTACTGTTTCCAGGTACGAAGGAACAGCCTCTTTCCGATATGTCGCTGACG
GCGGTCATCCGACGCATGAACGGAGACGAAACCCAAAAATGGACATCGCCTGATGGCGAGGTAATCACCGTCCATGGATT
TCGCGCCACTTTTCGCATGTGGGCGGCTGAGACAACCAACTATCCGCGAGAGGTTGCTGAACATGCACTGGCCCATCAGT
TGCCTGATGCAGTTGAACGCGCCTATCAACGTGGGACTCAATTCGCCAAGCGAATTGCCCTCATGTCCGACTGGGGGCAG
CAGTGCAAGAAGAAACCTTCTGCTGAGAAAGGACTCTGGACAATCACGTCGCTTCCTTGA

Upstream 100 bases:

>100_bases
AAATAACAATGCATTAGATAAAAATATTGTCCAATAACGTACAATTAAATTCAACCCAATCCACGTCTTATTTGATAGTC
AATTTGCTAGTCAACTTTAC

Downstream 100 bases:

>100_bases
CGCTCAAAACGATAGTAGAAATTCGTGGGTTTTAATTGGAAGCGGTTATATCAAACATAGGCGCAGGGTGACAGCTTAGG
GTGAGCCTTACTGAGCACTA

Product: Phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MARQIGKLTALQVTKLTKPGLYGDGGGLTLQITSRSSKSWLFRFMKDGKSYGMGLGPTHTVSLAEARQKALDARKLLTEG
INPLTAKKERAIAEQLTRARTISFDQCAEAYINAHKASWKNAKHADQWTNTLNTYASPIFGKLPVAEVDTPLVVKCLSAI
WQTKTETATRVRGRIESVLDWATTSGYRSGENPARWKGHLENLLATISKTSRTKHHASLPWQQVATFMSDLKSREGTAAR
ALELVILTACRSGEVRGAKWSEFDRKNKIWTIPAERMKAKREHEVPLSAQALELLKRLPEDGELLFPGTKEQPLSDMSLT
AVIRRMNGDETQKWTSPDGEVITVHGFRATFRMWAAETTNYPREVAEHALAHQLPDAVERAYQRGTQFAKRIALMSDWGQ
QCKKKPSAEKGLWTITSLP

Sequences:

>Translated_419_residues
MARQIGKLTALQVTKLTKPGLYGDGGGLTLQITSRSSKSWLFRFMKDGKSYGMGLGPTHTVSLAEARQKALDARKLLTEG
INPLTAKKERAIAEQLTRARTISFDQCAEAYINAHKASWKNAKHADQWTNTLNTYASPIFGKLPVAEVDTPLVVKCLSAI
WQTKTETATRVRGRIESVLDWATTSGYRSGENPARWKGHLENLLATISKTSRTKHHASLPWQQVATFMSDLKSREGTAAR
ALELVILTACRSGEVRGAKWSEFDRKNKIWTIPAERMKAKREHEVPLSAQALELLKRLPEDGELLFPGTKEQPLSDMSLT
AVIRRMNGDETQKWTSPDGEVITVHGFRATFRMWAAETTNYPREVAEHALAHQLPDAVERAYQRGTQFAKRIALMSDWGQ
QCKKKPSAEKGLWTITSLP
>Mature_418_residues
ARQIGKLTALQVTKLTKPGLYGDGGGLTLQITSRSSKSWLFRFMKDGKSYGMGLGPTHTVSLAEARQKALDARKLLTEGI
NPLTAKKERAIAEQLTRARTISFDQCAEAYINAHKASWKNAKHADQWTNTLNTYASPIFGKLPVAEVDTPLVVKCLSAIW
QTKTETATRVRGRIESVLDWATTSGYRSGENPARWKGHLENLLATISKTSRTKHHASLPWQQVATFMSDLKSREGTAARA
LELVILTACRSGEVRGAKWSEFDRKNKIWTIPAERMKAKREHEVPLSAQALELLKRLPEDGELLFPGTKEQPLSDMSLTA
VIRRMNGDETQKWTSPDGEVITVHGFRATFRMWAAETTNYPREVAEHALAHQLPDAVERAYQRGTQFAKRIALMSDWGQQ
CKKKPSAEKGLWTITSLP

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=380, Percent_Identity=29.7368421052632, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1788974, Length=433, Percent_Identity=29.3302540415704, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI1788690, Length=397, Percent_Identity=27.455919395466, Blast_Score=122, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46823; Mature: 46692

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARQIGKLTALQVTKLTKPGLYGDGGGLTLQITSRSSKSWLFRFMKDGKSYGMGLGPTHT
CCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCHHCCCCCCCCHH
VSLAEARQKALDARKLLTEGINPLTAKKERAIAEQLTRARTISFDQCAEAYINAHKASWK
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
NAKHADQWTNTLNTYASPIFGKLPVAEVDTPLVVKCLSAIWQTKTETATRVRGRIESVLD
CCCHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
WATTSGYRSGENPARWKGHLENLLATISKTSRTKHHASLPWQQVATFMSDLKSREGTAAR
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHCCCHHHH
ALELVILTACRSGEVRGAKWSEFDRKNKIWTIPAERMKAKREHEVPLSAQALELLKRLPE
HHHHHHHHHHCCCCCCCCCCHHHHCCCCEEECCHHHHHHHHHCCCCCCHHHHHHHHHCCC
DGELLFPGTKEQPLSDMSLTAVIRRMNGDETQKWTSPDGEVITVHGFRATFRMWAAETTN
CCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCC
YPREVAEHALAHQLPDAVERAYQRGTQFAKRIALMSDWGQQCKKKPSAEKGLWTITSLP
CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCC
>Mature Secondary Structure 
ARQIGKLTALQVTKLTKPGLYGDGGGLTLQITSRSSKSWLFRFMKDGKSYGMGLGPTHT
CCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCHHCCCCCCCCHH
VSLAEARQKALDARKLLTEGINPLTAKKERAIAEQLTRARTISFDQCAEAYINAHKASWK
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
NAKHADQWTNTLNTYASPIFGKLPVAEVDTPLVVKCLSAIWQTKTETATRVRGRIESVLD
CCCHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
WATTSGYRSGENPARWKGHLENLLATISKTSRTKHHASLPWQQVATFMSDLKSREGTAAR
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHCCCHHHH
ALELVILTACRSGEVRGAKWSEFDRKNKIWTIPAERMKAKREHEVPLSAQALELLKRLPE
HHHHHHHHHHCCCCCCCCCCHHHHCCCCEEECCHHHHHHHHHCCCCCCHHHHHHHHHCCC
DGELLFPGTKEQPLSDMSLTAVIRRMNGDETQKWTSPDGEVITVHGFRATFRMWAAETTN
CCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCC
YPREVAEHALAHQLPDAVERAYQRGTQFAKRIALMSDWGQQCKKKPSAEKGLWTITSLP
CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]