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The map label for this gene is nifL [H]

Identifier: 71907120

GI number: 71907120

Start: 1605113

End: 1606708

Strand: Reverse

Name: nifL [H]

Synonym: Daro_1488

Alternate gene names: 71907120

Gene position: 1606708-1605113 (Counterclockwise)

Preceding gene: 71907136

Following gene: 71907119

Centisome position: 35.7

GC content: 63.47

Gene sequence:

>1596_bases
ATGCTGCACCGCGGCATGGATTCTGCTTTGGTCGTAGAAAACGAATTCATGAGGAGCCACCCAATGACGGCAGTCCAGCG
CGCAAAACAAATAATCGAGCCATCGGCCGCCCAGGCACTTCCGCCGGAAGCCTACCGGCAGGCCGTTGACCAGGCCGACC
TGGCCATCTCGATTACTGACGACAAGGCCAACATCCTTTTCGCCAACGATGCGTTCACGCGGGTGACCGGCTATACGAAG
GAAGAGATCATCGGCAAGAACGAATCGGTGCTCTCCAACCACACGACGCCGCCAGAGGTGTACCAAGCCCTGTGGAAGTC
GCTCGCCGAACAAAAGCCATGGGCTGGCAAACTGCTCAACCGGCGCAAGGATGGCGAGCTTTACCTGGCGGAACTGAGCA
TTTCCCCGGTCGTCGATGCGACGGGAACAACCACCCATTTCCTCGGCATGCACCGCAACATCACCGAGCTGCATCGCCTG
GAACGCGTTGTCGCCAACCAGAAGCACCTGATCGAATCGGTCGTCGATGCTGCGCCAGTCGCTTTTGCCCTGCTCGACCC
AACCGGCCGCGTCATCCTCGACAACCAGGAATACAAGAAGCTGGTCACCGACCTGCGGGTCAAGGAACCGGCCCATACCG
TACTCGACAGCCTGCTGCCGGCCTGGCGCGAAGCACTGGCCGAAAACCCGCAGCAACTGGTAGTCAGCAACCGCGAAGCC
CGGATCGACCGGGCCGCCGGCCGGGCGCGCTGGCTGTCGGTCACCTCGTCAGTGATCGGCATGCACAGCGATTGCGCCGA
CAGCTATTTCTGCGCCGCCGGTCAGCCTGGCTTGCTGCTGGTTATCGCCGATGTCAGCAACCTGCGCGAGGAACAGGAGC
GCGCCCGCGCCTCGGCCCTGCAGGCCGTGCTGGCCGAGGAGGAACGCACGGCGGCCATCCGCGAAGGCCTGTCGGCCGCC
ATCTTCCGGCTGGAAGAGCCGATGAACGTGATGTCTTCGGCCATTTCGGTGCTCCAGCGCCGCGACCCGGCCAGCGCCGC
CATGCTGCAGCAGGCGCTATCGGGCAGCCGCGAACACATGGAGGCACTGCGCCAGGTCATTCCGCAAAGCCCGCAGGAGA
TCGTCGTCAGCGTAAACATGAATGAAATCCTGCGTGACGTGCTCGAAGTCAGCACGCCCCGCCTGCTCGCCGCCGGCATC
ATCGTCGATTGGCAACCGGCCGCCACCCTGCCTGCCATCCTCGGCCGCCCATTGCAACTGCGCATGCTGTTCAAGGCGCT
GGTCGACAACGCCATCGAGGCGATGAACATCAAGGGCTGGAAGCGCCGCGAACTGTCGCTGACCAGCGCCCTGAACGGTG
ACTGTATCGTCGTTTCCGTGCTCGACAGCGGCCCCGGCATCCCACAGGACTGGCGCTACAAGGCCTTCGAACCCTTCTTC
ACGGCCAAGGGCGGCAGCGGCAAACACATTGGTACCGGACTGTCGCGCGCCCAGCAGGTGGTGGCCGATCACGGCGGCAT
CATCGATCTCGATGACAGCCCGAGCGGCGGTTGCGCGGCGATTGTCGAATTCCGGGTCGACGGTGACCCGATCTAA

Upstream 100 bases:

>100_bases
ACAACAACGGTGCGTTTTTCCCCAAAGACAATGTCGCAAATGCAACATCAATTTCGTCGCATTTCCCCCGAAACGAGGCC
AGCGGAGGACTTGGCGCCAA

Downstream 100 bases:

>100_bases
GAAAAACCACGAGAACAGCATGCACGAACACACCATCCACCCGCTTGGCGATGAATGCCCGCCCACCGGCGGCTTCTGCC
GAACGCACGAGCTGAACATC

Product: PAS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MLHRGMDSALVVENEFMRSHPMTAVQRAKQIIEPSAAQALPPEAYRQAVDQADLAISITDDKANILFANDAFTRVTGYTK
EEIIGKNESVLSNHTTPPEVYQALWKSLAEQKPWAGKLLNRRKDGELYLAELSISPVVDATGTTTHFLGMHRNITELHRL
ERVVANQKHLIESVVDAAPVAFALLDPTGRVILDNQEYKKLVTDLRVKEPAHTVLDSLLPAWREALAENPQQLVVSNREA
RIDRAAGRARWLSVTSSVIGMHSDCADSYFCAAGQPGLLLVIADVSNLREEQERARASALQAVLAEEERTAAIREGLSAA
IFRLEEPMNVMSSAISVLQRRDPASAAMLQQALSGSREHMEALRQVIPQSPQEIVVSVNMNEILRDVLEVSTPRLLAAGI
IVDWQPAATLPAILGRPLQLRMLFKALVDNAIEAMNIKGWKRRELSLTSALNGDCIVVSVLDSGPGIPQDWRYKAFEPFF
TAKGGSGKHIGTGLSRAQQVVADHGGIIDLDDSPSGGCAAIVEFRVDGDPI

Sequences:

>Translated_531_residues
MLHRGMDSALVVENEFMRSHPMTAVQRAKQIIEPSAAQALPPEAYRQAVDQADLAISITDDKANILFANDAFTRVTGYTK
EEIIGKNESVLSNHTTPPEVYQALWKSLAEQKPWAGKLLNRRKDGELYLAELSISPVVDATGTTTHFLGMHRNITELHRL
ERVVANQKHLIESVVDAAPVAFALLDPTGRVILDNQEYKKLVTDLRVKEPAHTVLDSLLPAWREALAENPQQLVVSNREA
RIDRAAGRARWLSVTSSVIGMHSDCADSYFCAAGQPGLLLVIADVSNLREEQERARASALQAVLAEEERTAAIREGLSAA
IFRLEEPMNVMSSAISVLQRRDPASAAMLQQALSGSREHMEALRQVIPQSPQEIVVSVNMNEILRDVLEVSTPRLLAAGI
IVDWQPAATLPAILGRPLQLRMLFKALVDNAIEAMNIKGWKRRELSLTSALNGDCIVVSVLDSGPGIPQDWRYKAFEPFF
TAKGGSGKHIGTGLSRAQQVVADHGGIIDLDDSPSGGCAAIVEFRVDGDPI
>Mature_531_residues
MLHRGMDSALVVENEFMRSHPMTAVQRAKQIIEPSAAQALPPEAYRQAVDQADLAISITDDKANILFANDAFTRVTGYTK
EEIIGKNESVLSNHTTPPEVYQALWKSLAEQKPWAGKLLNRRKDGELYLAELSISPVVDATGTTTHFLGMHRNITELHRL
ERVVANQKHLIESVVDAAPVAFALLDPTGRVILDNQEYKKLVTDLRVKEPAHTVLDSLLPAWREALAENPQQLVVSNREA
RIDRAAGRARWLSVTSSVIGMHSDCADSYFCAAGQPGLLLVIADVSNLREEQERARASALQAVLAEEERTAAIREGLSAA
IFRLEEPMNVMSSAISVLQRRDPASAAMLQQALSGSREHMEALRQVIPQSPQEIVVSVNMNEILRDVLEVSTPRLLAAGI
IVDWQPAATLPAILGRPLQLRMLFKALVDNAIEAMNIKGWKRRELSLTSALNGDCIVVSVLDSGPGIPQDWRYKAFEPFF
TAKGGSGKHIGTGLSRAQQVVADHGGIIDLDDSPSGGCAAIVEFRVDGDPI

Specific function: Required for the inhibition of nifA activity in response to oxygen and low level of fixed nitrogen [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR014285
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR005467 [H]

Pfam domain/function: PF02518 HATPase_c; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 58089; Mature: 58089

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHRGMDSALVVENEFMRSHPMTAVQRAKQIIEPSAAQALPPEAYRQAVDQADLAISITD
CCCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHCCCHHCCCCHHHHHHHHCCCCEEEEEEC
DKANILFANDAFTRVTGYTKEEIIGKNESVLSNHTTPPEVYQALWKSLAEQKPWAGKLLN
CCCCEEEECCCHHHHCCCCHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHC
RRKDGELYLAELSISPVVDATGTTTHFLGMHRNITELHRLERVVANQKHLIESVVDAAPV
CCCCCCEEEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFALLDPTGRVILDNQEYKKLVTDLRVKEPAHTVLDSLLPAWREALAENPQQLVVSNREA
EEEEECCCCCEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHH
RIDRAAGRARWLSVTSSVIGMHSDCADSYFCAAGQPGLLLVIADVSNLREEQERARASAL
HHHHHHCHHHHHHHHHHHHHCCCHHCCCEEECCCCCCEEEEEECHHHHHHHHHHHHHHHH
QAVLAEEERTAAIREGLSAAIFRLEEPMNVMSSAISVLQRRDPASAAMLQQALSGSREHM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH
EALRQVIPQSPQEIVVSVNMNEILRDVLEVSTPRLLAAGIIVDWQPAATLPAILGRPLQL
HHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCHHHHCCEEEECCCCHHHHHHHCCCHHH
RMLFKALVDNAIEAMNIKGWKRRELSLTSALNGDCIVVSVLDSGPGIPQDWRYKAFEPFF
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCE
TAKGGSGKHIGTGLSRAQQVVADHGGIIDLDDSPSGGCAAIVEFRVDGDPI
ECCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEEEECCCCC
>Mature Secondary Structure
MLHRGMDSALVVENEFMRSHPMTAVQRAKQIIEPSAAQALPPEAYRQAVDQADLAISITD
CCCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHCCCHHCCCCHHHHHHHHCCCCEEEEEEC
DKANILFANDAFTRVTGYTKEEIIGKNESVLSNHTTPPEVYQALWKSLAEQKPWAGKLLN
CCCCEEEECCCHHHHCCCCHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHC
RRKDGELYLAELSISPVVDATGTTTHFLGMHRNITELHRLERVVANQKHLIESVVDAAPV
CCCCCCEEEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFALLDPTGRVILDNQEYKKLVTDLRVKEPAHTVLDSLLPAWREALAENPQQLVVSNREA
EEEEECCCCCEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHH
RIDRAAGRARWLSVTSSVIGMHSDCADSYFCAAGQPGLLLVIADVSNLREEQERARASAL
HHHHHHCHHHHHHHHHHHHHCCCHHCCCEEECCCCCCEEEEEECHHHHHHHHHHHHHHHH
QAVLAEEERTAAIREGLSAAIFRLEEPMNVMSSAISVLQRRDPASAAMLQQALSGSREHM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH
EALRQVIPQSPQEIVVSVNMNEILRDVLEVSTPRLLAAGIIVDWQPAATLPAILGRPLQL
HHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCHHHHCCEEEECCCCHHHHHHHCCCHHH
RMLFKALVDNAIEAMNIKGWKRRELSLTSALNGDCIVVSVLDSGPGIPQDWRYKAFEPFF
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCE
TAKGGSGKHIGTGLSRAQQVVADHGGIIDLDDSPSGGCAAIVEFRVDGDPI
ECCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8231815; 2840552; 9601070; 9593306 [H]