| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is modD [H]
Identifier: 71907107
GI number: 71907107
Start: 1596634
End: 1597479
Strand: Reverse
Name: modD [H]
Synonym: Daro_1475
Alternate gene names: 71907107
Gene position: 1597479-1596634 (Counterclockwise)
Preceding gene: 71907108
Following gene: 71907106
Centisome position: 35.49
GC content: 66.67
Gene sequence:
>846_bases ATGAGCCCCTACACTTTGCCCGACCGCGCGCTCGAAGCCCTGCTCGCCGACGACGCTCCGCAGGGCGATGCCACCACCTT CGCCCTCGGCATCGGCGACCAGCCCGGGCGCATGGTCTTTCGCGCCCGTTACGACATGGTGCTGTGCGGCAGCGAAGAAG CCCGGCGGATGGGCGAATTGCGTGGCCTGAAGGCAAGCGGGCTGATCGCCGCCAGCGGTAGCGCCCTGCAAGCCGGCCAG ATCATCCTGACGCTGGAAGGTTCGGCCAGCGGACTGCATATGGTCTGGAAAACAGCCCAGACGCTGATCGAATACCTGTC CGGCATCGCCTCGTCGGCTGCCACCATTCTCGCCGCAGCGCGAGTCGCCAATCCCGACATCGGCATTGCCTGCACCCGCA AGAACTTCCCCGGCACCAAGGCCGCGGCGATCAAGGCCATCCTGTGCGGCGGCGCCAGCCCGCACCGCTTGAGTTTGTCG GAAACCCTACTCGTTTTCGCCGAGCATCGTGCCTTTCTGGACAATGAAGCACCGGCCGCAACGGTCCGTCGCCTGCGCCG GCAATGGCCGGAACGTGCCATCGTCGTCGAGCTTGCCGACGAGGACGAAGCCCTGCTCTGGGCAAGGGCTGGCGCCGATA TCCTGCAGCTGGAAAAACTGTCGCCGGAGGCCGTCACCCGCTTGCGCCAGACACTGGGCGACTGCCCGGCCCGCATCGCG GCCGCCGGCGGCATAAATTCTGCTAACGCTGAAGCGTATGCACGGGCCGGGGCCGACATTCTGGTCACTTCGGCGCCGTA TTTCGCTCCGCCGCGTGACGTGGCGGTCACCCTCAGCCCCCTGTGA
Upstream 100 bases:
>100_bases GCTGCCACCGCGCTGCTCAATTACCTGAAGAGCGAAAAGGCGCTGGCCGTCATCAAGTCCTTCGGTTACGAATTGCGCTG ATTCGTCCGGCTTTGCGGCG
Downstream 100 bases:
>100_bases ACGCCCATGAAAATCGCCATCGCCACCCAGGATTTCGCCAAAGTCAGCGGCCACGCCGGCCAGGCCCGCCAATGGCTGCT CTACGACCTGAGTCTCCATC
Product: putative molybdenum utilization protein ModD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MSPYTLPDRALEALLADDAPQGDATTFALGIGDQPGRMVFRARYDMVLCGSEEARRMGELRGLKASGLIAASGSALQAGQ IILTLEGSASGLHMVWKTAQTLIEYLSGIASSAATILAAARVANPDIGIACTRKNFPGTKAAAIKAILCGGASPHRLSLS ETLLVFAEHRAFLDNEAPAATVRRLRRQWPERAIVVELADEDEALLWARAGADILQLEKLSPEAVTRLRQTLGDCPARIA AAGGINSANAEAYARAGADILVTSAPYFAPPRDVAVTLSPL
Sequences:
>Translated_281_residues MSPYTLPDRALEALLADDAPQGDATTFALGIGDQPGRMVFRARYDMVLCGSEEARRMGELRGLKASGLIAASGSALQAGQ IILTLEGSASGLHMVWKTAQTLIEYLSGIASSAATILAAARVANPDIGIACTRKNFPGTKAAAIKAILCGGASPHRLSLS ETLLVFAEHRAFLDNEAPAATVRRLRRQWPERAIVVELADEDEALLWARAGADILQLEKLSPEAVTRLRQTLGDCPARIA AAGGINSANAEAYARAGADILVTSAPYFAPPRDVAVTLSPL >Mature_280_residues SPYTLPDRALEALLADDAPQGDATTFALGIGDQPGRMVFRARYDMVLCGSEEARRMGELRGLKASGLIAASGSALQAGQI ILTLEGSASGLHMVWKTAQTLIEYLSGIASSAATILAAARVANPDIGIACTRKNFPGTKAAAIKAILCGGASPHRLSLSE TLLVFAEHRAFLDNEAPAATVRRLRRQWPERAIVVELADEDEALLWARAGADILQLEKLSPEAVTRLRQTLGDCPARIAA AGGINSANAEAYARAGADILVTSAPYFAPPRDVAVTLSPL
Specific function: NAD biosynthesis; aspartate to NaMN; third (last) step. [C]
COG id: COG0157
COG function: function code H; Nicotinate-nucleotide pyrophosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nadC/modD family [H]
Homologues:
Organism=Escherichia coli, GI1786299, Length=202, Percent_Identity=28.7128712871287, Blast_Score=67, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6321162, Length=268, Percent_Identity=26.4925373134328, Blast_Score=71, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR006242 - InterPro: IPR002638 - InterPro: IPR022412 [H]
Pfam domain/function: PF01729 QRPTase_C; PF02749 QRPTase_N [H]
EC number: 2.4.2.-
Molecular weight: Translated: 29557; Mature: 29426
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPYTLPDRALEALLADDAPQGDATTFALGIGDQPGRMVFRARYDMVLCGSEEARRMGEL CCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEEECCEEEECCHHHHHHHHH RGLKASGLIAASGSALQAGQIILTLEGSASGLHMVWKTAQTLIEYLSGIASSAATILAAA CCCCCCCEEEECCCCEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVANPDIGIACTRKNFPGTKAAAIKAILCGGASPHRLSLSETLLVFAEHRAFLDNEAPAA HHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHCCCCCCHH TVRRLRRQWPERAIVVELADEDEALLWARAGADILQLEKLSPEAVTRLRQTLGDCPARIA HHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCEEHHHCCCHHHHHHHHHHHCCCCHHHH AAGGINSANAEAYARAGADILVTSAPYFAPPRDVAVTLSPL HCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCEEEEEECC >Mature Secondary Structure SPYTLPDRALEALLADDAPQGDATTFALGIGDQPGRMVFRARYDMVLCGSEEARRMGEL CCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEEECCEEEECCHHHHHHHHH RGLKASGLIAASGSALQAGQIILTLEGSASGLHMVWKTAQTLIEYLSGIASSAATILAAA CCCCCCCEEEECCCCEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVANPDIGIACTRKNFPGTKAAAIKAILCGGASPHRLSLSETLLVFAEHRAFLDNEAPAA HHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHCCCCCCHH TVRRLRRQWPERAIVVELADEDEALLWARAGADILQLEKLSPEAVTRLRQTLGDCPARIA HHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCEEHHHCCCHHHHHHHHHHHCCCCHHHH AAGGINSANAEAYARAGADILVTSAPYFAPPRDVAVTLSPL HCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA