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The map label for this gene is nifM [H]

Identifier: 71907025

GI number: 71907025

Start: 1523028

End: 1523843

Strand: Reverse

Name: nifM [H]

Synonym: Daro_1393

Alternate gene names: 71907025

Gene position: 1523843-1523028 (Counterclockwise)

Preceding gene: 71907026

Following gene: 71907023

Centisome position: 33.85

GC content: 60.29

Gene sequence:

>816_bases
ATGCAACACGGTTACCTCGAACTAAAACTGTCCTGGGAACTCTTCAAGAAAGGCCCGGAAACGCTGAGCGAACCGGAGCG
CGACCGTCTCGACGATATCGCCCGCAAGCAGGACAGCATCGAACAGCGCATCCTCGCCAGCGCGGCTTCGGCCAATGTCG
TCGTCCCGGCCGCCACTGTGAAGAACCGGCTCGATGAAATCCGCGCACGCTATCCGGCAAATGAAGAATTCATCCTCGAC
ATGGCACGCAGCGATCTTGACGAAGCCGCGCTGGAACAGGCCGTCGAACGCGATCTGCGCATCGAGGCTGTGCTCGAAAA
GGTCGCATCGAGCAGCCCGCCGGTCAGCGCCGTCGATGCCGAAATCTACTACCGTCTGCATCCGGAAGCCTTCGATCGGC
CCGAGGCCCGTCGCCTGCGCCACATCCTGATTACCTTCAACACCCCACAGGAAAAGGCCAAGGCAATTGCCACTCTGGAA
TCGCTGCGCTCGACACTGAAAAATCCCGCAAAATTCGCCGAGGCGGCACTACGCCATTCACAATGCCCAACCGCCATGGA
AGGCGGCCAACTCGGTACGGTAAAGCGTAAGCAGCTTTACGCCGAACTTGAACCGGCTGCCTTCGCTTTGAACGAAGGTG
AGATCAGCGCCGTACTTGCGTCTCCGATCGGCCTGCACATCCTGCGCTGCGACGAAATTCTGCCGAGCGGCATGCTGGCG
TTTGGCGAGGTATGCGAACGTATCATCGCGCGCCTGGGCGACAAGCGCCGCCGCGAGGCGCAACGCGAATGGATAAAGAG
CCTCCCTGTCGCCTGA

Upstream 100 bases:

>100_bases
TCCGGCGTCGCCTACCACATCCATTTCGACCGCTTGCCGGGCCGCGTCCTGCAAATTCCTGAAGCCCTGCTGGAACCGGT
CGCAACCAGGGAATGAAAGC

Downstream 100 bases:

>100_bases
GGTCCAGCCGGTGCGGAAAACAGTGGTCAATGTGCGAAGCCACTGTGCAGACTTGATCGCCCCGCTTCCGACAGCCGGTG
AATAAACATTACTTATCCCC

Product: PpiC-type peptidyl-prolyl cis-trans isomerase

Products: peptidylproline (omega=0) [C]

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MQHGYLELKLSWELFKKGPETLSEPERDRLDDIARKQDSIEQRILASAASANVVVPAATVKNRLDEIRARYPANEEFILD
MARSDLDEAALEQAVERDLRIEAVLEKVASSSPPVSAVDAEIYYRLHPEAFDRPEARRLRHILITFNTPQEKAKAIATLE
SLRSTLKNPAKFAEAALRHSQCPTAMEGGQLGTVKRKQLYAELEPAAFALNEGEISAVLASPIGLHILRCDEILPSGMLA
FGEVCERIIARLGDKRRREAQREWIKSLPVA

Sequences:

>Translated_271_residues
MQHGYLELKLSWELFKKGPETLSEPERDRLDDIARKQDSIEQRILASAASANVVVPAATVKNRLDEIRARYPANEEFILD
MARSDLDEAALEQAVERDLRIEAVLEKVASSSPPVSAVDAEIYYRLHPEAFDRPEARRLRHILITFNTPQEKAKAIATLE
SLRSTLKNPAKFAEAALRHSQCPTAMEGGQLGTVKRKQLYAELEPAAFALNEGEISAVLASPIGLHILRCDEILPSGMLA
FGEVCERIIARLGDKRRREAQREWIKSLPVA
>Mature_271_residues
MQHGYLELKLSWELFKKGPETLSEPERDRLDDIARKQDSIEQRILASAASANVVVPAATVKNRLDEIRARYPANEEFILD
MARSDLDEAALEQAVERDLRIEAVLEKVASSSPPVSAVDAEIYYRLHPEAFDRPEARRLRHILITFNTPQEKAKAIATLE
SLRSTLKNPAKFAEAALRHSQCPTAMEGGQLGTVKRKQLYAELEPAAFALNEGEISAVLASPIGLHILRCDEILPSGMLA
FGEVCERIIARLGDKRRREAQREWIKSLPVA

Specific function: Required for the activation and stabilization of the iron-component (nifH) of nitrogenase. Probable PPIase [H]

COG id: COG0760

COG function: function code O; Parvulin-like peptidyl-prolyl isomerase

Gene ontology:

Cell location: Type II Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PpiC domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014282
- InterPro:   IPR000297
- InterPro:   IPR023058
- InterPro:   IPR008880 [H]

Pfam domain/function: PF00639 Rotamase [H]

EC number: 5.2.1.8 [C]

Molecular weight: Translated: 30330; Mature: 30330

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS01096 PPIC_PPIASE_1 ; PS50198 PPIC_PPIASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHGYLELKLSWELFKKGPETLSEPERDRLDDIARKQDSIEQRILASAASANVVVPAATV
CCCCEEEEEEEHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHH
KNRLDEIRARYPANEEFILDMARSDLDEAALEQAVERDLRIEAVLEKVASSSPPVSAVDA
HHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
EIYYRLHPEAFDRPEARRLRHILITFNTPQEKAKAIATLESLRSTLKNPAKFAEAALRHS
HHHEEECCHHCCCHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
QCPTAMEGGQLGTVKRKQLYAELEPAAFALNEGEISAVLASPIGLHILRCDEILPSGMLA
CCCCCCCCCCCCCHHHHHHHHHCCHHHEEECCCCHHHHHHCCHHHHHHHHHHHCCCHHHH
FGEVCERIIARLGDKRRREAQREWIKSLPVA
HHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQHGYLELKLSWELFKKGPETLSEPERDRLDDIARKQDSIEQRILASAASANVVVPAATV
CCCCEEEEEEEHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHH
KNRLDEIRARYPANEEFILDMARSDLDEAALEQAVERDLRIEAVLEKVASSSPPVSAVDA
HHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
EIYYRLHPEAFDRPEARRLRHILITFNTPQEKAKAIATLESLRSTLKNPAKFAEAALRHS
HHHEEECCHHCCCHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
QCPTAMEGGQLGTVKRKQLYAELEPAAFALNEGEISAVLASPIGLHILRCDEILPSGMLA
CCCCCCCCCCCCCHHHHHHHHHCCHHHEEECCCCHHHHHHCCHHHHHHHHHHHCCCHHHH
FGEVCERIIARLGDKRRREAQREWIKSLPVA
HHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Peptidoproline (omega=180) [C]

Specific reaction: Peptidoproline (omega=180) = peptidylproline (omega=0) [C]

General reaction: Rotation (Single bond) [C]

Inhibitor: cyclosporins [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1885524 [H]