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The map label for this gene is ydaL [C]

Identifier: 71906927

GI number: 71906927

Start: 1402119

End: 1402889

Strand: Reverse

Name: ydaL [C]

Synonym: Daro_1292

Alternate gene names: 71906927

Gene position: 1402889-1402119 (Counterclockwise)

Preceding gene: 71906928

Following gene: 71906868

Centisome position: 31.17

GC content: 63.81

Gene sequence:

>771_bases
TTGATCGATCCGGAAGACCTCGCTGCCTTCCAGGCGGCAGTGGCCGACATCAAGCCACTGCCGCCGGTTAACCGTGTTCA
TCTGACCAAACCGCCACGACCAGTCTCGGCCCGACCGTTGGCCAGCGAAAAAAGTCCGCCGGCGCAGAAAAAACGCCGTA
ATGAGACCTTGCCGGCGCACTGGAATTCCGCTGCCGAATCTCCTACCACCAACCCGGACAGCAAGCTGGAACCGGACCTG
GCTGCATTTCGCGCTGCGATGGCTGGCGTCCAGCCACTGCCCTCACCCAATCTTGTCCAGCACGGCACCTGCCCGCCGCC
GCCTCGCCCGCTGCAACATATCGCCGACGAACAGGCGGCGCTGCATGAAAGCTTGCATGGCCACATCGGCCTGCAAGACC
GCCTGGAAGGTGGTGATGAACCGCACCACCTGCGCACAGGCTTGGCCCAGAATGTTCTCCGTGACCTGCGACGCGGGCGC
TGGGTCGTTCAGAATGAAATCGACCTGCACGGCCTGAATCGTGACGAAGCCCGCCAATTGCTCGCCACTTTCCTGGCGAT
ATGCCTGCATCGCGAACAGCGCTGCGTGCGGGTCGTGCACGGCAAGGGCCTGGGCTCACCACAGAAGCTCTCCATCCTGC
GCCAACTGGTCCGCGGCTGGCTTGCCCAGCGCGAAGAAGTCCTGGCCTACTGCCAGGCCAAGCCACACGATGGCGGCGAA
GGCGCCCTGCTCGTCCTGCTGCGCGCCCCGAAAAAACAAAGGGCGACCTGA

Upstream 100 bases:

>100_bases
CCAGATCTACAAGCAGGCCTGCACCTCGGCCGGCTCGGGCTGCATGGCAGCGCTCGATGCTGAGCGTTACCTGGACAACC
TCGGTCACGCCTGAACCAAC

Downstream 100 bases:

>100_bases
GTCACCCTTTTCTGGCACTACCCTGCGGTCGATAGCGACCGCGGAGACGTCATCAGACAGCCGCTTCGTCGGTTTCGCCC
GTACGGATGCGCACCACCTG

Product: Smr protein/MutS2 C-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MIDPEDLAAFQAAVADIKPLPPVNRVHLTKPPRPVSARPLASEKSPPAQKKRRNETLPAHWNSAAESPTTNPDSKLEPDL
AAFRAAMAGVQPLPSPNLVQHGTCPPPPRPLQHIADEQAALHESLHGHIGLQDRLEGGDEPHHLRTGLAQNVLRDLRRGR
WVVQNEIDLHGLNRDEARQLLATFLAICLHREQRCVRVVHGKGLGSPQKLSILRQLVRGWLAQREEVLAYCQAKPHDGGE
GALLVLLRAPKKQRAT

Sequences:

>Translated_256_residues
MIDPEDLAAFQAAVADIKPLPPVNRVHLTKPPRPVSARPLASEKSPPAQKKRRNETLPAHWNSAAESPTTNPDSKLEPDL
AAFRAAMAGVQPLPSPNLVQHGTCPPPPRPLQHIADEQAALHESLHGHIGLQDRLEGGDEPHHLRTGLAQNVLRDLRRGR
WVVQNEIDLHGLNRDEARQLLATFLAICLHREQRCVRVVHGKGLGSPQKLSILRQLVRGWLAQREEVLAYCQAKPHDGGE
GALLVLLRAPKKQRAT
>Mature_256_residues
MIDPEDLAAFQAAVADIKPLPPVNRVHLTKPPRPVSARPLASEKSPPAQKKRRNETLPAHWNSAAESPTTNPDSKLEPDL
AAFRAAMAGVQPLPSPNLVQHGTCPPPPRPLQHIADEQAALHESLHGHIGLQDRLEGGDEPHHLRTGLAQNVLRDLRRGR
WVVQNEIDLHGLNRDEARQLLATFLAICLHREQRCVRVVHGKGLGSPQKLSILRQLVRGWLAQREEVLAYCQAKPHDGGE
GALLVLLRAPKKQRAT

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=104, Percent_Identity=37.5, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788671, Length=178, Percent_Identity=30.3370786516854, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625
- InterPro:   IPR022990 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 28228; Mature: 28228

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDPEDLAAFQAAVADIKPLPPVNRVHLTKPPRPVSARPLASEKSPPAQKKRRNETLPAH
CCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC
WNSAAESPTTNPDSKLEPDLAAFRAAMAGVQPLPSPNLVQHGTCPPPPRPLQHIADEQAA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LHESLHGHIGLQDRLEGGDEPHHLRTGLAQNVLRDLRRGRWVVQNEIDLHGLNRDEARQL
HHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHH
LATFLAICLHREQRCVRVVHGKGLGSPQKLSILRQLVRGWLAQREEVLAYCQAKPHDGGE
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GALLVLLRAPKKQRAT
CEEEEEEECCHHCCCC
>Mature Secondary Structure
MIDPEDLAAFQAAVADIKPLPPVNRVHLTKPPRPVSARPLASEKSPPAQKKRRNETLPAH
CCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC
WNSAAESPTTNPDSKLEPDLAAFRAAMAGVQPLPSPNLVQHGTCPPPPRPLQHIADEQAA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LHESLHGHIGLQDRLEGGDEPHHLRTGLAQNVLRDLRRGRWVVQNEIDLHGLNRDEARQL
HHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHH
LATFLAICLHREQRCVRVVHGKGLGSPQKLSILRQLVRGWLAQREEVLAYCQAKPHDGGE
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GALLVLLRAPKKQRAT
CEEEEEEECCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA