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The map label for this gene is ompA [H]

Identifier: 71906867

GI number: 71906867

Start: 1332727

End: 1333386

Strand: Reverse

Name: ompA [H]

Synonym: Daro_1228

Alternate gene names: 71906867

Gene position: 1333386-1332727 (Counterclockwise)

Preceding gene: 71906868

Following gene: 71906866

Centisome position: 29.62

GC content: 61.82

Gene sequence:

>660_bases
ATGATCAAAAATATCGTCAAGAAATCTCTGGTTCTGGCCCTGCTGGCTGGCATCGGCTTCTCTGCTGTTGCGCAAGAGCG
CGTTTACCTGATCGACCAGCGTGACGTCGTCGCCAAGAGCGGCTTCGGTCTGTGCTGGCGCGATGGCTACTGGACCCCGG
CCGCTGCCGCTGCCGACAAGGCCGGTTGCGAGTGCGACAAGGACCTGTTGCCGGCTTCCGCTTGCGGCGCTGCCCCCGCA
GCCGCCCCGGCCGGTGCCGCTGCTGCTGGCGTGAAGCCGTCCGGTGAAAAGATCACCGTCGCTGCTGACGCCCTGTTCGA
CTTCAACAAGGCTGTCCTGCGTCCGGCTGGTAAAGCCAAGCTCGACGAGCTGGTCTCCAAGGCCAAGGCCATCAAGCTTG
AAGTGATCCTGGCCGTTGGCCACACCGACCGCATCGGTTCCGATTCCTACAACCAGAAGCTGTCCGAGAAGCGCGCTGCC
GCTGTCAAGGAATACCTGGTTGCCAAGGGTATCGAAGCCAACCGTGTTTACACCGAAGGCAAGGGCGAGAAGCAGCCGGT
CACCGGCGACAAGTGCAAGGGCAATGCCAAGACCAAGGCCCTGATCGACTGCCTGCAGCCGGATCGTCGCGTCGACATCG
AAGTCATCGGCACCAAGTAA

Upstream 100 bases:

>100_bases
TAGCACTATGGCAGAATAGTTTGGAATTCCGCCAGCGGACCTGATCTATGGTCGTGGAGCGGGTTAAAGATTTCCAAATT
TTCTTCAATGAGGGAAAACA

Downstream 100 bases:

>100_bases
TCGGCCGTCGCTTCACCGAAAAGCCCTGCCTTGGCAGGGCTTTTTCTTTTCCGTCAATTGAACAGATAAAAGCCATGCTT
AACGCCGACCAAGCCGAACT

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MIKNIVKKSLVLALLAGIGFSAVAQERVYLIDQRDVVAKSGFGLCWRDGYWTPAAAAADKAGCECDKDLLPASACGAAPA
AAPAGAAAAGVKPSGEKITVAADALFDFNKAVLRPAGKAKLDELVSKAKAIKLEVILAVGHTDRIGSDSYNQKLSEKRAA
AVKEYLVAKGIEANRVYTEGKGEKQPVTGDKCKGNAKTKALIDCLQPDRRVDIEVIGTK

Sequences:

>Translated_219_residues
MIKNIVKKSLVLALLAGIGFSAVAQERVYLIDQRDVVAKSGFGLCWRDGYWTPAAAAADKAGCECDKDLLPASACGAAPA
AAPAGAAAAGVKPSGEKITVAADALFDFNKAVLRPAGKAKLDELVSKAKAIKLEVILAVGHTDRIGSDSYNQKLSEKRAA
AVKEYLVAKGIEANRVYTEGKGEKQPVTGDKCKGNAKTKALIDCLQPDRRVDIEVIGTK
>Mature_219_residues
MIKNIVKKSLVLALLAGIGFSAVAQERVYLIDQRDVVAKSGFGLCWRDGYWTPAAAAADKAGCECDKDLLPASACGAAPA
AAPAGAAAAGVKPSGEKITVAADALFDFNKAVLRPAGKAKLDELVSKAKAIKLEVILAVGHTDRIGSDSYNQKLSEKRAA
AVKEYLVAKGIEANRVYTEGKGEKQPVTGDKCKGNAKTKALIDCLQPDRRVDIEVIGTK

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1787191, Length=126, Percent_Identity=50.7936507936508, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI48994946, Length=120, Percent_Identity=29.1666666666667, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22954; Mature: 22954

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKNIVKKSLVLALLAGIGFSAVAQERVYLIDQRDVVAKSGFGLCWRDGYWTPAAAAADK
CCHHHHHHHHHHHHHHHCCHHHHHHHHEEEECCCCHHHHCCCCEEEECCCCCCHHHHHHH
AGCECDKDLLPASACGAAPAAAPAGAAAAGVKPSGEKITVAADALFDFNKAVLRPAGKAK
CCCCCCHHCCCCHHCCCCCCCCCCCCHHCCCCCCCCEEEEEHHHHHHHHHHHHCCCCHHH
LDELVSKAKAIKLEVILAVGHTDRIGSDSYNQKLSEKRAAAVKEYLVAKGIEANRVYTEG
HHHHHHHHHHEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
KGEKQPVTGDKCKGNAKTKALIDCLQPDRRVDIEVIGTK
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCC
>Mature Secondary Structure
MIKNIVKKSLVLALLAGIGFSAVAQERVYLIDQRDVVAKSGFGLCWRDGYWTPAAAAADK
CCHHHHHHHHHHHHHHHCCHHHHHHHHEEEECCCCHHHHCCCCEEEECCCCCCHHHHHHH
AGCECDKDLLPASACGAAPAAAPAGAAAAGVKPSGEKITVAADALFDFNKAVLRPAGKAK
CCCCCCHHCCCCHHCCCCCCCCCCCCHHCCCCCCCCEEEEEHHHHHHHHHHHHCCCCHHH
LDELVSKAKAIKLEVILAVGHTDRIGSDSYNQKLSEKRAAAVKEYLVAKGIEANRVYTEG
HHHHHHHHHHEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
KGEKQPVTGDKCKGNAKTKALIDCLQPDRRVDIEVIGTK
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]