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The map label for this gene is rnfA [H]

Identifier: 71906802

GI number: 71906802

Start: 1267566

End: 1268150

Strand: Reverse

Name: rnfA [H]

Synonym: Daro_1163

Alternate gene names: 71906802

Gene position: 1268150-1267566 (Counterclockwise)

Preceding gene: 71906803

Following gene: 71906801

Centisome position: 28.17

GC content: 59.32

Gene sequence:

>585_bases
ATGAGCCACTATATATTCATCCTCATCGGCACGGTGCTGGTCAACAATGTGGTGTTGGTCAGAATTCTCGGCCTTTGCCC
CTTCATGGGCGTGTCCAAAAAGCTGGAAACAGCCTACGGCATGGGTGCCGCCACGACGTTCGTGCTCACCGTGGGCACGG
GGGCCAGCTGGATCATCGACCACTACCTGCTGATGCCGTTTGACCTGATGTATCTGCGCATCATCGCCTTCATCGTCACC
ATCGCCGCCTTTGTCCAGCTGACCGAACTGGTCATCCAGAAGACCAGTCCGATGCTGCATCAGACGCTCGGCATCTACCT
GCCACTGATCACCACCAACTGCGCCGTACTCGGTGTGCCCTTGCTGGCGCTCGGCGCCAAGTACGATTTCGTCGAATCAC
TGCTCTTCGGTGCCGGCAGCTCCGTCGGCTTCTCGCTCGCCCTGATCCTTTTTGCCGGCCTGCGCGAACGTATCGAGGGC
GCCGACGTCCCGACCTATTTCAAGGGCACCGCCATCGCCCTCGTCACCGGCGGCTTGATGTCGCTGGCCTTCATGGGCTT
CGCCGGACTGGATAAATACCAATGA

Upstream 100 bases:

>100_bases
GGCCCACGTCATGCGGAAATCCGTATAAGCCCATTCGATCCACGCGGTTGTTTGCACTGCAACAAAGCCCGATAATTCGC
ACCTCAAGCTGGTTAAAACT

Downstream 100 bases:

>100_bases
TCAGCGCCCTAGCCATCATGGCCCTCGGGGCCATCATTCTCGGTGCCGCCCTTGGCTTTGCCTCGATCAAATTCAAGGTC
CATGGCAATCCGCTGGTCGA

Product: electron transport complex, RnfABCDGE type, A subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MSHYIFILIGTVLVNNVVLVRILGLCPFMGVSKKLETAYGMGAATTFVLTVGTGASWIIDHYLLMPFDLMYLRIIAFIVT
IAAFVQLTELVIQKTSPMLHQTLGIYLPLITTNCAVLGVPLLALGAKYDFVESLLFGAGSSVGFSLALILFAGLRERIEG
ADVPTYFKGTAIALVTGGLMSLAFMGFAGLDKYQ

Sequences:

>Translated_194_residues
MSHYIFILIGTVLVNNVVLVRILGLCPFMGVSKKLETAYGMGAATTFVLTVGTGASWIIDHYLLMPFDLMYLRIIAFIVT
IAAFVQLTELVIQKTSPMLHQTLGIYLPLITTNCAVLGVPLLALGAKYDFVESLLFGAGSSVGFSLALILFAGLRERIEG
ADVPTYFKGTAIALVTGGLMSLAFMGFAGLDKYQ
>Mature_193_residues
SHYIFILIGTVLVNNVVLVRILGLCPFMGVSKKLETAYGMGAATTFVLTVGTGASWIIDHYLLMPFDLMYLRIIAFIVTI
AAFVQLTELVIQKTSPMLHQTLGIYLPLITTNCAVLGVPLLALGAKYDFVESLLFGAGSSVGFSLALILFAGLRERIEGA
DVPTYFKGTAIALVTGGLMSLAFMGFAGLDKYQ

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=192, Percent_Identity=61.4583333333333, Blast_Score=247, Evalue=4e-67,
Organism=Escherichia coli, GI1787919, Length=168, Percent_Identity=33.9285714285714, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 20867; Mature: 20736

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHYIFILIGTVLVNNVVLVRILGLCPFMGVSKKLETAYGMGAATTFVLTVGTGASWIID
CCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHEEEEEECCCHHHHHH
HYLLMPFDLMYLRIIAFIVTIAAFVQLTELVIQKTSPMLHQTLGIYLPLITTNCAVLGVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LLALGAKYDFVESLLFGAGSSVGFSLALILFAGLRERIEGADVPTYFKGTAIALVTGGLM
HHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHH
SLAFMGFAGLDKYQ
HHHHHHHCCCCCCC
>Mature Secondary Structure 
SHYIFILIGTVLVNNVVLVRILGLCPFMGVSKKLETAYGMGAATTFVLTVGTGASWIID
CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHEEEEEECCCHHHHHH
HYLLMPFDLMYLRIIAFIVTIAAFVQLTELVIQKTSPMLHQTLGIYLPLITTNCAVLGVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LLALGAKYDFVESLLFGAGSSVGFSLALILFAGLRERIEGADVPTYFKGTAIALVTGGLM
HHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHH
SLAFMGFAGLDKYQ
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA