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The map label for this gene is uvrD [C]

Identifier: 71906747

GI number: 71906747

Start: 1210765

End: 1212546

Strand: Reverse

Name: uvrD [C]

Synonym: Daro_1108

Alternate gene names: 71906747

Gene position: 1212546-1210765 (Counterclockwise)

Preceding gene: 71906748

Following gene: 71906746

Centisome position: 26.94

GC content: 62.18

Gene sequence:

>1782_bases
TTGGCTGCGCTGATACCGGCAATCGGCACCTGCGTCTCGCGCATGACAGGCGGTGAGCGCCGCCTGGCATACCGCCTCGA
ACAAAAGCTCGAAGACGACTGGCTGCTCTGGTACGACGTACCGCTCGGCCCGCGCAATGTGCATCCCGACTTTGTGGTCT
TCAATCCGCGCCGGGGCGTGCTGGTGCTTGAGGTCAAGGACTGGAAGCTCGACACCATCCGCGACATCGACCGCCAGAGC
GCCAGCATCCTCACCAGCACCGGCCTCAAGCGCGTCTCCAACCCGCTCGAACAAGCTCGACAATACGCCCACGAAGTCAG
CAATCTGCTGCAACGCGACCCGCAATTGACCATCAACAGCGGACGCATGCAGGGAACGCTACTCTTCCCGTGGAGCTACG
GCGTCGTGCTCGCCAACATCAGCCGCAAGCAATTTGACAGCACCAACCTCGCCGACGTCATCGAGCCTCACCGGGTTATC
TGTCAGGACGAAATGACCGAAAGCGTCGATGCCGAAGCCTTTCAGGAACGGCTGTGGGGCATGCTCCCCTTTGCCCGCAG
CGTGCCGCTCTCACTGCCGCAGATCGACCGCATCCGCTGGCACCTGTTTCCCGAAATCCGCATCGCCGCGCCAACCCAAA
ACGGCCTGTTCGATGATCAGGAACCGGAAATCCCCGACATCGTCCACGTCATGGACCTGCAGCAGGAGCAACTCGCCCGC
AGCCTCGGCGAAGGCCACCGCGTCATCCACGGCGTGGCCGGCAGCGGCAAGACGCTGATCCTCGGCTACCGGGCCGAACA
CCTGGCCAAAGTCTGCGCCCGGCCGATCCTTGTACTCTGCTACAACCGCACCCTCGCCAAACGGCTCACCCGCACCATGG
CTAGCAAGGGGCTGGCCGACAAGGTGCACGTCCACACCTTCCACCAATGGTGCCGGGCGCAACTCGTTGCCTATAACGCC
GACCTGCCGGAAAGCGGAAAAGGCAGCGATATCTACGCCGCCGAACTGGTCGACCGCCTGATCCGCGCCGTGGACGCCAA
CATCATCCCGGCCGGCCAGTACGACGCTGTGCTGATCGACGAAGGCCACGATTTTCAGCCCGAATGGCTCAAGCTCGTCG
CCCAGATGGTCAACCCGAGCACCAACTCGCTGCTCGTCCTCTACGACGACGCCCAATCCATCTACGGCAATGGGCGTCAC
AACAAATTCAGCTTCAAGAGCCTCGGCATCCAGGCCCAGGGCCGCACCACCATCCTCAAGATCAACTACCGCAACACCCA
GGAAGTCCTCGAACTGGCCAGTGGCATCGCCAGCGATCTGCTCAAACCCAGCGCCTCGGACGAAGACGGCGTACCGCTCG
TCGCCCCCATCAGCGCCGGCCGTCACGGCCCCAAACCGCTACTGATCAAGCTACCCAGCATCCAGGAAGAAGCCGACTAC
ATCGCCAAACACCTCAAGGAAGCCCACAAAACCGGCACCCCGTGGAGCGACATGGCCGTCATCTACCGCGACTACGGCAT
CGGCAAACCGGTCCTCGCCACGCTAAGAAAAGCCGGCATCCCGGTGACCTACCAGGACGACATCACCTTTGCGGAGAAGG
AAGACACCGTGAAGTTCCTGACCATGCATAGCTGCAAGGGGCTGGAATTTCCGCTGGTGGCGATACCGGGGGCTGGTCGG
GCGGTGGATGAAGGGCGGAAGGATGAGGAGGCGCGGTTGTTGTATGTGGCGATGACTAGGGCGACTAGGGAGTTGGTGGT
GGTTGGCGGTGAAACCAGTTAA

Upstream 100 bases:

>100_bases
TTTTCTTTGTCTGGTAATTCACGAACAAGGCAAATTAGCAAAACTTGCTATAGCTTTTGAATGGCATAATCGGCCAAATA
CAAAAGCATAGGGGGCGGCC

Downstream 100 bases:

>100_bases
CTCTGGCCCTATTTATATTAACTTGAAAATTTCATGAATAAGGTTATTAAATGGCTGTCCTTCGTATAACCAGTGTTCGA
TTTAGTAGATATAAGGCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: DNA Helicase; DNA Helicase II; NERD Domain Protein; LexA Repressor; NERD Domain-Containing Protein; UvrD/Rep Helicase; Superfamily I DNA/RNA Helicase-Like Protein; UvrD/REP Helicase Domain Protein; Superfamily I DNA/RNA Helicase; Plasmid Stabilization System; Superfamily I DNA And RNA Helicase; Nerd Domain Protein; UvrD/REP Type DNA Helicase; UvrD/REP Family ATP-Dependent DNA Helicase; Helicase Protein; NA Helicase.; DNA Helicase II-Like Protein; DNA/RNA Helicase Superfamily I; Helicase; Helicase Family Protein; Peptidase; Superfamily I DNA And RNA Helicase-Like Protein; Uvrd/Rep Helicase

Number of amino acids: Translated: 593; Mature: 592

Protein sequence:

>593_residues
MAALIPAIGTCVSRMTGGERRLAYRLEQKLEDDWLLWYDVPLGPRNVHPDFVVFNPRRGVLVLEVKDWKLDTIRDIDRQS
ASILTSTGLKRVSNPLEQARQYAHEVSNLLQRDPQLTINSGRMQGTLLFPWSYGVVLANISRKQFDSTNLADVIEPHRVI
CQDEMTESVDAEAFQERLWGMLPFARSVPLSLPQIDRIRWHLFPEIRIAAPTQNGLFDDQEPEIPDIVHVMDLQQEQLAR
SLGEGHRVIHGVAGSGKTLILGYRAEHLAKVCARPILVLCYNRTLAKRLTRTMASKGLADKVHVHTFHQWCRAQLVAYNA
DLPESGKGSDIYAAELVDRLIRAVDANIIPAGQYDAVLIDEGHDFQPEWLKLVAQMVNPSTNSLLVLYDDAQSIYGNGRH
NKFSFKSLGIQAQGRTTILKINYRNTQEVLELASGIASDLLKPSASDEDGVPLVAPISAGRHGPKPLLIKLPSIQEEADY
IAKHLKEAHKTGTPWSDMAVIYRDYGIGKPVLATLRKAGIPVTYQDDITFAEKEDTVKFLTMHSCKGLEFPLVAIPGAGR
AVDEGRKDEEARLLYVAMTRATRELVVVGGETS

Sequences:

>Translated_593_residues
MAALIPAIGTCVSRMTGGERRLAYRLEQKLEDDWLLWYDVPLGPRNVHPDFVVFNPRRGVLVLEVKDWKLDTIRDIDRQS
ASILTSTGLKRVSNPLEQARQYAHEVSNLLQRDPQLTINSGRMQGTLLFPWSYGVVLANISRKQFDSTNLADVIEPHRVI
CQDEMTESVDAEAFQERLWGMLPFARSVPLSLPQIDRIRWHLFPEIRIAAPTQNGLFDDQEPEIPDIVHVMDLQQEQLAR
SLGEGHRVIHGVAGSGKTLILGYRAEHLAKVCARPILVLCYNRTLAKRLTRTMASKGLADKVHVHTFHQWCRAQLVAYNA
DLPESGKGSDIYAAELVDRLIRAVDANIIPAGQYDAVLIDEGHDFQPEWLKLVAQMVNPSTNSLLVLYDDAQSIYGNGRH
NKFSFKSLGIQAQGRTTILKINYRNTQEVLELASGIASDLLKPSASDEDGVPLVAPISAGRHGPKPLLIKLPSIQEEADY
IAKHLKEAHKTGTPWSDMAVIYRDYGIGKPVLATLRKAGIPVTYQDDITFAEKEDTVKFLTMHSCKGLEFPLVAIPGAGR
AVDEGRKDEEARLLYVAMTRATRELVVVGGETS
>Mature_592_residues
AALIPAIGTCVSRMTGGERRLAYRLEQKLEDDWLLWYDVPLGPRNVHPDFVVFNPRRGVLVLEVKDWKLDTIRDIDRQSA
SILTSTGLKRVSNPLEQARQYAHEVSNLLQRDPQLTINSGRMQGTLLFPWSYGVVLANISRKQFDSTNLADVIEPHRVIC
QDEMTESVDAEAFQERLWGMLPFARSVPLSLPQIDRIRWHLFPEIRIAAPTQNGLFDDQEPEIPDIVHVMDLQQEQLARS
LGEGHRVIHGVAGSGKTLILGYRAEHLAKVCARPILVLCYNRTLAKRLTRTMASKGLADKVHVHTFHQWCRAQLVAYNAD
LPESGKGSDIYAAELVDRLIRAVDANIIPAGQYDAVLIDEGHDFQPEWLKLVAQMVNPSTNSLLVLYDDAQSIYGNGRHN
KFSFKSLGIQAQGRTTILKINYRNTQEVLELASGIASDLLKPSASDEDGVPLVAPISAGRHGPKPLLIKLPSIQEEADYI
AKHLKEAHKTGTPWSDMAVIYRDYGIGKPVLATLRKAGIPVTYQDDITFAEKEDTVKFLTMHSCKGLEFPLVAIPGAGRA
VDEGRKDEEARLLYVAMTRATRELVVVGGETS

Specific function: Has Both Atpase And Helicase Activities. Unwinds DNA Duplexes With 3' To 5' Polarity With Respect To The Bound Strand And Initiates Unwinding Most Effectively When A Single-Stranded Region Is Present. Involved In The Post-Incision Events Of Nucleotide Exc

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 3000 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.6.1.- [C]

Molecular weight: Translated: 66163; Mature: 66031

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS50965 NERD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALIPAIGTCVSRMTGGERRLAYRLEQKLEDDWLLWYDVPLGPRNVHPDFVVFNPRRGV
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCE
LVLEVKDWKLDTIRDIDRQSASILTSTGLKRVSNPLEQARQYAHEVSNLLQRDPQLTINS
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
GRMQGTLLFPWSYGVVLANISRKQFDSTNLADVIEPHRVICQDEMTESVDAEAFQERLWG
CCEEEEEEECCCCCEEEEECCHHHCCCCCHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHH
MLPFARSVPLSLPQIDRIRWHLFPEIRIAAPTQNGLFDDQEPEIPDIVHVMDLQQEQLAR
HCCHHHCCCCCCCCHHCEEEEECCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCHHHHHH
SLGEGHRVIHGVAGSGKTLILGYRAEHLAKVCARPILVLCYNRTLAKRLTRTMASKGLAD
HHCCCCEEEEEECCCCCEEEEECCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCC
KVHVHTFHQWCRAQLVAYNADLPESGKGSDIYAAELVDRLIRAVDANIIPAGQYDAVLID
HHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEE
EGHDFQPEWLKLVAQMVNPSTNSLLVLYDDAQSIYGNGRHNKFSFKSLGIQAQGRTTILK
CCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHCCCCCCCCEEHHHCCEEECCCEEEEE
INYRNTQEVLELASGIASDLLKPSASDEDGVPLVAPISAGRHGPKPLLIKLPSIQEEADY
EECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHH
IAKHLKEAHKTGTPWSDMAVIYRDYGIGKPVLATLRKAGIPVTYQDDITFAEKEDTVKFL
HHHHHHHHHHCCCCHHHHEEEEECCCCCHHHHHHHHHCCCCEEEECCCEECCCCCCEEEE
TMHSCKGLEFPLVAIPGAGRAVDEGRKDEEARLLYVAMTRATRELVVVGGETS
EEECCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCC
>Mature Secondary Structure 
AALIPAIGTCVSRMTGGERRLAYRLEQKLEDDWLLWYDVPLGPRNVHPDFVVFNPRRGV
CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCE
LVLEVKDWKLDTIRDIDRQSASILTSTGLKRVSNPLEQARQYAHEVSNLLQRDPQLTINS
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
GRMQGTLLFPWSYGVVLANISRKQFDSTNLADVIEPHRVICQDEMTESVDAEAFQERLWG
CCEEEEEEECCCCCEEEEECCHHHCCCCCHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHH
MLPFARSVPLSLPQIDRIRWHLFPEIRIAAPTQNGLFDDQEPEIPDIVHVMDLQQEQLAR
HCCHHHCCCCCCCCHHCEEEEECCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCHHHHHH
SLGEGHRVIHGVAGSGKTLILGYRAEHLAKVCARPILVLCYNRTLAKRLTRTMASKGLAD
HHCCCCEEEEEECCCCCEEEEECCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCC
KVHVHTFHQWCRAQLVAYNADLPESGKGSDIYAAELVDRLIRAVDANIIPAGQYDAVLID
HHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEE
EGHDFQPEWLKLVAQMVNPSTNSLLVLYDDAQSIYGNGRHNKFSFKSLGIQAQGRTTILK
CCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHCCCCCCCCEEHHHCCEEECCCEEEEE
INYRNTQEVLELASGIASDLLKPSASDEDGVPLVAPISAGRHGPKPLLIKLPSIQEEADY
EECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHH
IAKHLKEAHKTGTPWSDMAVIYRDYGIGKPVLATLRKAGIPVTYQDDITFAEKEDTVKFL
HHHHHHHHHHCCCCHHHHEEEEECCCCCHHHHHHHHHCCCCEEEECCCEECCCCCCEEEE
TMHSCKGLEFPLVAIPGAGRAVDEGRKDEEARLLYVAMTRATRELVVVGGETS
EEECCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: Hydrolase; In phosphorus-containing anhydrides [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA