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The map label for this gene is ygdL [H]

Identifier: 71906295

GI number: 71906295

Start: 721811

End: 722578

Strand: Reverse

Name: ygdL [H]

Synonym: Daro_0656

Alternate gene names: 71906295

Gene position: 722578-721811 (Counterclockwise)

Preceding gene: 71906296

Following gene: 71906288

Centisome position: 16.05

GC content: 55.47

Gene sequence:

>768_bases
ATGAGCTTCGATCGCGAACGTCGTTTCGGAGGCATCACGCGCCTCTATGGTGTCGAGGGTGCAGAACGCATCCAGCAGGC
CAATGTATGCATCGTCGGCATCGGCGGCGTCGGCTCCTGGATTGTCGAGGCCCTGGCACGAACCGGCGTCAACCGGATGA
CCCTCGTTGACCTGGACATGGTGGCCGAATCCAACACCAATCGGCAAATCCACGCGCTAGGCGATATTTACGGCAAAGCA
AAAGTGGAGGCTATGGCCGAACGGGTACGCGCCATCAACCCGGATTGCGCCGTAACCTGTATCGAGGATTTTGTTACGCC
TGAAAACGTTGGGCAGATTTTCGAGCAACAATTTTCGGTAATCATCGATGCCATCGACCAAGTCCGCGCCAAGGCGGCAA
TGATTGCGTTCTGCCGGCGCCAAAAGATCCCAATCATCATTGCCGGAGCAGCGGGAGGGCAAATCGATCCAACGCAAGTT
CGCGTGGCCGATCTCAGCCAGACAGTGCAGGACCCACTCCTAGCCAAGGTTCGCTCATTACTTCGCCGAGAGTATGGCTT
TCCAAAAGACACCAAGAAGAAATTCGGCGTCTCAGCAATTTTTTCGACCGAACACTTGCGCTATCCGGACAAAAATAATA
ACTCCTGCGAAGCAGACCGCGGCCCAACAGGCCTAAATTGCGCGGGCTTCGGATCTTCAGTCTGTGTGACATCCGTATTC
GGCATGGCAGCTGCGGCTCAAGCCATCAATCTAATCACCACCCCCTGA

Upstream 100 bases:

>100_bases
TGCTTCGCGCGATTGCCGAAATCAACGCTTGCGACAACCAGTTTTCCCCTGAGTGGATCGCTCCTTTCAATGCAGTAATT
CGCAAGACCATTGAAACCTG

Downstream 100 bases:

>100_bases
CCAAGCTGCGTTCGCAAAAAACTACCACTTGGCTCACGACCCCCTTGGCTATTCCTAAACATTGGTCAGGAGGGAATTAT
CGCTGTCTTAATGCAGACTC

Product: UBA/THIF-type NAD/FAD binding fold

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MSFDRERRFGGITRLYGVEGAERIQQANVCIVGIGGVGSWIVEALARTGVNRMTLVDLDMVAESNTNRQIHALGDIYGKA
KVEAMAERVRAINPDCAVTCIEDFVTPENVGQIFEQQFSVIIDAIDQVRAKAAMIAFCRRQKIPIIIAGAAGGQIDPTQV
RVADLSQTVQDPLLAKVRSLLRREYGFPKDTKKKFGVSAIFSTEHLRYPDKNNNSCEADRGPTGLNCAGFGSSVCVTSVF
GMAAAAQAINLITTP

Sequences:

>Translated_255_residues
MSFDRERRFGGITRLYGVEGAERIQQANVCIVGIGGVGSWIVEALARTGVNRMTLVDLDMVAESNTNRQIHALGDIYGKA
KVEAMAERVRAINPDCAVTCIEDFVTPENVGQIFEQQFSVIIDAIDQVRAKAAMIAFCRRQKIPIIIAGAAGGQIDPTQV
RVADLSQTVQDPLLAKVRSLLRREYGFPKDTKKKFGVSAIFSTEHLRYPDKNNNSCEADRGPTGLNCAGFGSSVCVTSVF
GMAAAAQAINLITTP
>Mature_254_residues
SFDRERRFGGITRLYGVEGAERIQQANVCIVGIGGVGSWIVEALARTGVNRMTLVDLDMVAESNTNRQIHALGDIYGKAK
VEAMAERVRAINPDCAVTCIEDFVTPENVGQIFEQQFSVIIDAIDQVRAKAAMIAFCRRQKIPIIIAGAAGGQIDPTQVR
VADLSQTVQDPLLAKVRSLLRREYGFPKDTKKKFGVSAIFSTEHLRYPDKNNNSCEADRGPTGLNCAGFGSSVCVTSVFG
MAAAAQAINLITTP

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Homo sapiens, GI4885649, Length=147, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=5e-12,
Organism=Escherichia coli, GI1789177, Length=248, Percent_Identity=53.2258064516129, Blast_Score=278, Evalue=3e-76,
Organism=Escherichia coli, GI1787048, Length=140, Percent_Identity=30.7142857142857, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI87082356, Length=140, Percent_Identity=28.5714285714286, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17540406, Length=135, Percent_Identity=28.1481481481481, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193203301, Length=139, Percent_Identity=26.6187050359712, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321790, Length=193, Percent_Identity=29.5336787564767, Blast_Score=87, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6322825, Length=142, Percent_Identity=30.9859154929577, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6325438, Length=139, Percent_Identity=25.1798561151079, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24660640, Length=137, Percent_Identity=30.6569343065693, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24582879, Length=135, Percent_Identity=30.3703703703704, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 27611; Mature: 27480

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFDRERRFGGITRLYGVEGAERIQQANVCIVGIGGVGSWIVEALARTGVNRMTLVDLDM
CCCCHHHHHCCHHHHHCCCHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCEEEEEHHH
VAESNTNRQIHALGDIYGKAKVEAMAERVRAINPDCAVTCIEDFVTPENVGQIFEQQFSV
HHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
IIDAIDQVRAKAAMIAFCRRQKIPIIIAGAAGGQIDPTQVRVADLSQTVQDPLLAKVRSL
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LRREYGFPKDTKKKFGVSAIFSTEHLRYPDKNNNSCEADRGPTGLNCAGFGSSVCVTSVF
HHHHCCCCCCHHHHHCHHHEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
GMAAAAQAINLITTP
HHHHHHHHHHHCCCC
>Mature Secondary Structure 
SFDRERRFGGITRLYGVEGAERIQQANVCIVGIGGVGSWIVEALARTGVNRMTLVDLDM
CCCHHHHHCCHHHHHCCCHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCEEEEEHHH
VAESNTNRQIHALGDIYGKAKVEAMAERVRAINPDCAVTCIEDFVTPENVGQIFEQQFSV
HHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
IIDAIDQVRAKAAMIAFCRRQKIPIIIAGAAGGQIDPTQVRVADLSQTVQDPLLAKVRSL
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LRREYGFPKDTKKKFGVSAIFSTEHLRYPDKNNNSCEADRGPTGLNCAGFGSSVCVTSVF
HHHHCCCCCCHHHHHCHHHEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
GMAAAAQAINLITTP
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]