| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is dat [H]
Identifier: 71905932
GI number: 71905932
Start: 331363
End: 332238
Strand: Reverse
Name: dat [H]
Synonym: Daro_0290
Alternate gene names: 71905932
Gene position: 332238-331363 (Counterclockwise)
Preceding gene: 71905933
Following gene: 71905931
Centisome position: 7.38
GC content: 61.87
Gene sequence:
>876_bases ATGACACCCTACGTCGCCGATCCCGTCTACCTGAATGGCCGTTTCCTGCCGTTGGCGGAAGCGGGTATTTCCCCACTCGA CCGGGGTTTTCTATACGGCGACGGCGTCTATGAAGTGATCCCGGTCTATTCCCGCCGGGCTTTCCGCATCGACGAACATG TCAAGCGTCTGCAAGCGACACTGGACGGCATCAAGCTGGCCAACCCGCTGACCGCCGACGGCTGGAAGGAAGTCATTGCC AAGCTGATCGAAACTGCCCCCTGGGACGACCAGTCGATCTATCTGCAAGTCACCCGCGGCGCCGACGACAAGCGTGACCA CGCCTTCCCGCCGGCCTCGATACCATCGACAGCCTTTGCCTTCGCTTCGCCGCTGGTCACCACGCCCGCCGAGGTCCGCG CCAAGGGCGTCGCCGCGATCACCGTGCCCGATCTTCGCTGGTCGCGCTGCGACCTCAAGGTCATCTCGCTGCTCGCCAAC GTGCTGGCCCGCCAGCAAGCCGTCGATCAAGGCTGTGCCGAGGCACTGTTGATTCGCGACGGTTTCATGAAAGAAGGCGC TGCCTCCAACATCTTCATCGTCAAGGACGGCGTGCTGGTCGCCCCGCCCAAGACGCACCTGATGCTGCCGGGCATTACCT ACGACGTGATCCTCGAACTGGCGGCGACCCACCAGCAGGCTTTGGCAGTACGCGAAATCAGCGAAACTGAACTTCGTGGC GCCGACGAGGTCTGGATGACCTCATCGACCAAGGAAATCCTGGCAATCACGACGCTCGATGGCGAGCCAGTCGGCACCGG CAAACCCGGCCCGTTCGGCGAGCAGATGTGGCAGTGGTATCAGGATTTCAAGAACACCGTAATGCGTAAAGGCTGA
Upstream 100 bases:
>100_bases CCGTACAACGAATATCCGGTCGTCGCTCTTGAAAATATCGCACTCGGCAATATCTTCATTCGTATCATCGATACCATCCG ACTCTGGTTCAACTAAACCC
Downstream 100 bases:
>100_bases GATGGCTTCGTACAAGGACACCCTCCTCGAATTCCCGTGTGAATTCCCCCTGAAGATCATGGGCAAGGCTGATGACAGCC TGGCTCAGGTCGTCCTCGAC
Product: branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase
Products: NA
Alternate protein names: D-amino acid aminotransferase; D-amino acid transaminase; DAAT; D-aspartate aminotransferase [H]
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MTPYVADPVYLNGRFLPLAEAGISPLDRGFLYGDGVYEVIPVYSRRAFRIDEHVKRLQATLDGIKLANPLTADGWKEVIA KLIETAPWDDQSIYLQVTRGADDKRDHAFPPASIPSTAFAFASPLVTTPAEVRAKGVAAITVPDLRWSRCDLKVISLLAN VLARQQAVDQGCAEALLIRDGFMKEGAASNIFIVKDGVLVAPPKTHLMLPGITYDVILELAATHQQALAVREISETELRG ADEVWMTSSTKEILAITTLDGEPVGTGKPGPFGEQMWQWYQDFKNTVMRKG
Sequences:
>Translated_291_residues MTPYVADPVYLNGRFLPLAEAGISPLDRGFLYGDGVYEVIPVYSRRAFRIDEHVKRLQATLDGIKLANPLTADGWKEVIA KLIETAPWDDQSIYLQVTRGADDKRDHAFPPASIPSTAFAFASPLVTTPAEVRAKGVAAITVPDLRWSRCDLKVISLLAN VLARQQAVDQGCAEALLIRDGFMKEGAASNIFIVKDGVLVAPPKTHLMLPGITYDVILELAATHQQALAVREISETELRG ADEVWMTSSTKEILAITTLDGEPVGTGKPGPFGEQMWQWYQDFKNTVMRKG >Mature_290_residues TPYVADPVYLNGRFLPLAEAGISPLDRGFLYGDGVYEVIPVYSRRAFRIDEHVKRLQATLDGIKLANPLTADGWKEVIAK LIETAPWDDQSIYLQVTRGADDKRDHAFPPASIPSTAFAFASPLVTTPAEVRAKGVAAITVPDLRWSRCDLKVISLLANV LARQQAVDQGCAEALLIRDGFMKEGAASNIFIVKDGVLVAPPKTHLMLPGITYDVILELAATHQQALAVREISETELRGA DEVWMTSSTKEILAITTLDGEPVGTGKPGPFGEQMWQWYQDFKNTVMRKG
Specific function: Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha- keto acid in
COG id: COG0115
COG function: function code EH; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Escherichia coli, GI48994963, Length=299, Percent_Identity=29.7658862876254, Blast_Score=102, Evalue=2e-23,
Paralogues:
None
Copy number: 2342 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 11,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001544 - InterPro: IPR018300 - InterPro: IPR005784 [H]
Pfam domain/function: PF01063 Aminotran_4 [H]
EC number: =2.6.1.21 [H]
Molecular weight: Translated: 31936; Mature: 31805
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPYVADPVYLNGRFLPLAEAGISPLDRGFLYGDGVYEVIPVYSRRAFRIDEHVKRLQAT CCCCCCCCEEECCEEEEHHHCCCCHHHCCEEECCCHHHHHHHHCCCEEHHHHHHHHHHHH LDGIKLANPLTADGWKEVIAKLIETAPWDDQSIYLQVTRGADDKRDHAFPPASIPSTAFA HHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHH FASPLVTTPAEVRAKGVAAITVPDLRWSRCDLKVISLLANVLARQQAVDQGCAEALLIRD HHCCCCCCCHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GFMKEGAASNIFIVKDGVLVAPPKTHLMLPGITYDVILELAATHQQALAVREISETELRG CCCCCCCCCCEEEEECCEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC ADEVWMTSSTKEILAITTLDGEPVGTGKPGPFGEQMWQWYQDFKNTVMRKG CCCEEEECCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TPYVADPVYLNGRFLPLAEAGISPLDRGFLYGDGVYEVIPVYSRRAFRIDEHVKRLQAT CCCCCCCEEECCEEEEHHHCCCCHHHCCEEECCCHHHHHHHHCCCEEHHHHHHHHHHHH LDGIKLANPLTADGWKEVIAKLIETAPWDDQSIYLQVTRGADDKRDHAFPPASIPSTAFA HHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHH FASPLVTTPAEVRAKGVAAITVPDLRWSRCDLKVISLLANVLARQQAVDQGCAEALLIRD HHCCCCCCCHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GFMKEGAASNIFIVKDGVLVAPPKTHLMLPGITYDVILELAATHQQALAVREISETELRG CCCCCCCCCCEEEEECCEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC ADEVWMTSSTKEILAITTLDGEPVGTGKPGPFGEQMWQWYQDFKNTVMRKG CCCEEEECCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]