| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is 71905883
Identifier: 71905883
GI number: 71905883
Start: 271675
End: 272505
Strand: Reverse
Name: 71905883
Synonym: Daro_0241
Alternate gene names: NA
Gene position: 272505-271675 (Counterclockwise)
Preceding gene: 71905884
Following gene: 71905882
Centisome position: 6.05
GC content: 58.97
Gene sequence:
>831_bases GTGCGCACACCCAGCCATCTATTAAAAATAGCAAGCCTGCTCATCGCAGTGCTTATCGGCAGCGCGAGTCATGCTGCCGG CGCCTACAGCTTCGCGGTCGTTCCACAATTTGACCAGCGCAAGCTTTTCGCCACTTGGAAACCGATCGTCGACAACATCA GCAAGCGAACCGGCATTCAGCTCAATCTGGTGGCCACCCTGACCGTTCCTGAATTCGAACGCGAACTCTCCAAGGGCAGT TTCGATTTCGTCTATGCCAACCCCTACCATATCCTGCGCGAAGAAGACCGCCAGGGCTACGTTCCGCTGATTCGCGACAA GACCCCGCTGCGTGGCATCCTGGTCGTAGCCAAGGATAGCCCGCTCAAATCTCCGGCCGATCTGGATGGCCAGCAAATGG CGATTCCATCGTTCAACGCCCTTGGCGCCAGCCTGTTGCTGCGGGCCGATCTCGCTCAGATATTCAAGATCAAGGTCACG CCGGTCAATGTCAAAACCCACAGCTCGGTCTACCTGTATGTCGCCAACGGCTTGATACCCGCCGGTGGCGGGGTCGAAAA GACCTTCCAGGAACAGGAACCTGCCGTCCGCGATCTGTTGCGGGTGCTGTACACCACCCGCGAAATGCCATCCCATCCCA TCGCCGCCCACCCACGTGTACCTGCCAAGGTTCAAGCCGCCATCAAGCAAGCCTTCCTTGAACTGGCCGCCACTGACGAG GGCCGCCGACTACTGCAGGAAATTCCGATGACCGATGCGGTCGCCGCATCGATGAAGGATTACGCGCCGATGCGCGCCTG GGGGCTGGCAAGCTACTGGGTCGATCCGTAA
Upstream 100 bases:
>100_bases CAAGGGATGAAATAGCCATTTCCTGCAAATATCCTTAGTACTTGCAGGGCCTTTTGGCGCATACTTTTAAACGCCAAAAT CACAAATAGTGAGGCAACCT
Downstream 100 bases:
>100_bases CGTCATGGGCCTGCGCCAGAAATTCCTGCTGCCGCTGTTCCTGATCAGCCTGCTGGTTGGCGGCCTGCTGCATTTTGTCT GGATTCCGGCGTCGATCCGC
Product: periplasmic binding protein-related protein
Products: NA
Alternate protein names: Phosphate/Phosphonate ABC Transporter Periplasmic Protein; ABC Transport System Periplasmic Component
Number of amino acids: Translated: 276; Mature: 276
Protein sequence:
>276_residues MRTPSHLLKIASLLIAVLIGSASHAAGAYSFAVVPQFDQRKLFATWKPIVDNISKRTGIQLNLVATLTVPEFERELSKGS FDFVYANPYHILREEDRQGYVPLIRDKTPLRGILVVAKDSPLKSPADLDGQQMAIPSFNALGASLLLRADLAQIFKIKVT PVNVKTHSSVYLYVANGLIPAGGGVEKTFQEQEPAVRDLLRVLYTTREMPSHPIAAHPRVPAKVQAAIKQAFLELAATDE GRRLLQEIPMTDAVAASMKDYAPMRAWGLASYWVDP
Sequences:
>Translated_276_residues MRTPSHLLKIASLLIAVLIGSASHAAGAYSFAVVPQFDQRKLFATWKPIVDNISKRTGIQLNLVATLTVPEFERELSKGS FDFVYANPYHILREEDRQGYVPLIRDKTPLRGILVVAKDSPLKSPADLDGQQMAIPSFNALGASLLLRADLAQIFKIKVT PVNVKTHSSVYLYVANGLIPAGGGVEKTFQEQEPAVRDLLRVLYTTREMPSHPIAAHPRVPAKVQAAIKQAFLELAATDE GRRLLQEIPMTDAVAASMKDYAPMRAWGLASYWVDP >Mature_276_residues MRTPSHLLKIASLLIAVLIGSASHAAGAYSFAVVPQFDQRKLFATWKPIVDNISKRTGIQLNLVATLTVPEFERELSKGS FDFVYANPYHILREEDRQGYVPLIRDKTPLRGILVVAKDSPLKSPADLDGQQMAIPSFNALGASLLLRADLAQIFKIKVT PVNVKTHSSVYLYVANGLIPAGGGVEKTFQEQEPAVRDLLRVLYTTREMPSHPIAAHPRVPAKVQAAIKQAFLELAATDE GRRLLQEIPMTDAVAASMKDYAPMRAWGLASYWVDP
Specific function: Unknown
COG id: COG3221
COG function: function code P; ABC-type phosphate/phosphonate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30384; Mature: 30384
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTPSHLLKIASLLIAVLIGSASHAAGAYSFAVVPQFDQRKLFATWKPIVDNISKRTGIQ CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEE LNLVATLTVPEFERELSKGSFDFVYANPYHILREEDRQGYVPLIRDKTPLRGILVVAKDS EEEEEEEECCHHHHHHCCCCEEEEEECCHHEEECCCCCCCCCEECCCCCCCEEEEEECCC PLKSPADLDGQQMAIPSFNALGASLLLRADLAQIFKIKVTPVNVKTHSSVYLYVANGLIP CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCEEEEEEECCEEE AGGGVEKTFQEQEPAVRDLLRVLYTTREMPSHPIAAHPRVPAKVQAAIKQAFLELAATDE CCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH GRRLLQEIPMTDAVAASMKDYAPMRAWGLASYWVDP HHHHHHHCCCHHHHHHHHHHCCCHHHHCCHHHCCCC >Mature Secondary Structure MRTPSHLLKIASLLIAVLIGSASHAAGAYSFAVVPQFDQRKLFATWKPIVDNISKRTGIQ CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEE LNLVATLTVPEFERELSKGSFDFVYANPYHILREEDRQGYVPLIRDKTPLRGILVVAKDS EEEEEEEECCHHHHHHCCCCEEEEEECCHHEEECCCCCCCCCEECCCCCCCEEEEEECCC PLKSPADLDGQQMAIPSFNALGASLLLRADLAQIFKIKVTPVNVKTHSSVYLYVANGLIP CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCEEEEEEECCEEE AGGGVEKTFQEQEPAVRDLLRVLYTTREMPSHPIAAHPRVPAKVQAAIKQAFLELAATDE CCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH GRRLLQEIPMTDAVAASMKDYAPMRAWGLASYWVDP HHHHHHHCCCHHHHHHHHHHCCCHHHHCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA