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The map label for this gene is yqxC [H]

Identifier: 71905826

GI number: 71905826

Start: 202290

End: 203111

Strand: Reverse

Name: yqxC [H]

Synonym: Daro_0184

Alternate gene names: 71905826

Gene position: 203111-202290 (Counterclockwise)

Preceding gene: 71905827

Following gene: 71905825

Centisome position: 4.51

GC content: 61.31

Gene sequence:

>822_bases
ATGAGCATGAACTCCTTCCACGCGCGGCAAAAAAAGCCGCGCCCAACCCCTCAGCCAGCCCACGAACGGCCGGCCGGGGT
GTTGCGGGCGGATGCCCTGCTCGTCGCCCAGAAACTGGCCCCCTCCCGCACCGCGGCGCAATGGATGATCAAATCCGGAC
GCGTCAGCTGGGCTGGTGGCGCAATCAGCAAGCCTGCGCTGGAATTACCCGAAGATACACCGCTGACCGTCACCGCCGAC
CCCGAAGCTCATTACGTCTCGCGCGGCGGCAACAAGCTGGCCGGCGCTTTATCTGAAACCGGCCTCACGGTCGCAGGCAA
GGTCTGCCTTGATGTTGGCCAATCAACGGGCGGTTTCACCGACTGCCTGCTGCAGGCCGGTGCCAAACACGTCGTTGGCG
TCGATGTCGGCCACGGCCAACTGCACTCGCAATTGCGTCATGACTCTGCGGTCACGGCCATCGAAGGCGTTAACTGCCGC
GCCCTGACGGCCGCCGATCTCGGCAAGGCTTTTCCCGAAAGCGGTTTCGAGCTGATCGTTGGCGACGTTTCCTTCATCTC
CATGACCCTGGTTCTGCCGCAATTGCCTGCGTTACTCGCAGAACACGGCGACCTGCTGCTGCTCGTCAAGCCTCAGTTCG
AAGTCGGCCCCGACAACATTGGCAAGGGTGGGATTGTGCGTGACATAGCGCTTTACAAGGACGTAGAGACAAAGTTCCGA
ACCTGCGCCGCAAGCCTTGGCCTGAAAGTCCGCGCCTGGCTGGATAGTCCGATTACCGGCGGTGATGGCAACCGCGAATT
CTTCATCTGGTTGAACAAATGA

Upstream 100 bases:

>100_bases
GGTCGCTGGATTCTGGTCGGCGCTATTCGGTTCGATTGGCTACAGTCTGATTTCCTGGGCACTTAGTGTGATCTTCCTGC
GCAAAAGCTAGGCTTCCACG

Downstream 100 bases:

>100_bases
AACCTGAAATCTCCATCGAGTTTTTCCCGCCCCAAACACCGGAAGGCATCGAAAAGCTGCGAACCGTTCGGGCCGAACTG
GCCAAGCTGAACCCGCATTT

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MSMNSFHARQKKPRPTPQPAHERPAGVLRADALLVAQKLAPSRTAAQWMIKSGRVSWAGGAISKPALELPEDTPLTVTAD
PEAHYVSRGGNKLAGALSETGLTVAGKVCLDVGQSTGGFTDCLLQAGAKHVVGVDVGHGQLHSQLRHDSAVTAIEGVNCR
ALTAADLGKAFPESGFELIVGDVSFISMTLVLPQLPALLAEHGDLLLLVKPQFEVGPDNIGKGGIVRDIALYKDVETKFR
TCAASLGLKVRAWLDSPITGGDGNREFFIWLNK

Sequences:

>Translated_273_residues
MSMNSFHARQKKPRPTPQPAHERPAGVLRADALLVAQKLAPSRTAAQWMIKSGRVSWAGGAISKPALELPEDTPLTVTAD
PEAHYVSRGGNKLAGALSETGLTVAGKVCLDVGQSTGGFTDCLLQAGAKHVVGVDVGHGQLHSQLRHDSAVTAIEGVNCR
ALTAADLGKAFPESGFELIVGDVSFISMTLVLPQLPALLAEHGDLLLLVKPQFEVGPDNIGKGGIVRDIALYKDVETKFR
TCAASLGLKVRAWLDSPITGGDGNREFFIWLNK
>Mature_272_residues
SMNSFHARQKKPRPTPQPAHERPAGVLRADALLVAQKLAPSRTAAQWMIKSGRVSWAGGAISKPALELPEDTPLTVTADP
EAHYVSRGGNKLAGALSETGLTVAGKVCLDVGQSTGGFTDCLLQAGAKHVVGVDVGHGQLHSQLRHDSAVTAIEGVNCRA
LTAADLGKAFPESGFELIVGDVSFISMTLVLPQLPALLAEHGDLLLLVKPQFEVGPDNIGKGGIVRDIALYKDVETKFRT
CAASLGLKVRAWLDSPITGGDGNREFFIWLNK

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 28899; Mature: 28767

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMNSFHARQKKPRPTPQPAHERPAGVLRADALLVAQKLAPSRTAAQWMIKSGRVSWAGG
CCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCC
AISKPALELPEDTPLTVTADPEAHYVSRGGNKLAGALSETGLTVAGKVCLDVGQSTGGFT
CCCCCCCCCCCCCCEEEEECCCHHHHHCCCCHHHHHHHHCCCEEECHHHEECCCCCCCHH
DCLLQAGAKHVVGVDVGHGQLHSQLRHDSAVTAIEGVNCRALTAADLGKAFPESGFELIV
HHHHHCCCCEEEEEECCCHHHHHHHHHCHHHHEECCCCEEEEEHHHHHHHCCCCCCEEEE
GDVSFISMTLVLPQLPALLAEHGDLLLLVKPQFEVGPDNIGKGGIVRDIALYKDVETKFR
CCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
TCAASLGLKVRAWLDSPITGGDGNREFFIWLNK
HHHHHCCCEEEEEECCCCCCCCCCEEEEEEECC
>Mature Secondary Structure 
SMNSFHARQKKPRPTPQPAHERPAGVLRADALLVAQKLAPSRTAAQWMIKSGRVSWAGG
CCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCC
AISKPALELPEDTPLTVTADPEAHYVSRGGNKLAGALSETGLTVAGKVCLDVGQSTGGFT
CCCCCCCCCCCCCCEEEEECCCHHHHHCCCCHHHHHHHHCCCEEECHHHEECCCCCCCHH
DCLLQAGAKHVVGVDVGHGQLHSQLRHDSAVTAIEGVNCRALTAADLGKAFPESGFELIV
HHHHHCCCCEEEEEECCCHHHHHHHHHCHHHHEECCCCEEEEEHHHHHHHCCCCCCEEEE
GDVSFISMTLVLPQLPALLAEHGDLLLLVKPQFEVGPDNIGKGGIVRDIALYKDVETKFR
CCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
TCAASLGLKVRAWLDSPITGGDGNREFFIWLNK
HHHHHCCCEEEEEECCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]