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The map label for this gene is nlpD [H]

Identifier: 71891956

GI number: 71891956

Start: 220332

End: 221285

Strand: Direct

Name: nlpD [H]

Synonym: BPEN_173

Alternate gene names: 71891956

Gene position: 220332-221285 (Clockwise)

Preceding gene: 71891955

Following gene: 71891957

Centisome position: 27.83

GC content: 28.72

Gene sequence:

>954_bases
ATGCTAGTAGATAGTAGCAGATCGATAATTTATATAATAGTAGTTCTTGTATCTCTAGAGGGGTGTTCTAGAGATAATAT
CTATAGATACCATAATAAATGCGCGTCACAATCCCTGAATTCTGATGTTACTACTATTTATATGTCTCAAGATAAAAAGA
AAAATATACGGTATCCACAGAAAATACCTGCTGTTGATAACATTCATAAGTACAATCATACAAATTACAGTTCTTATCAC
AAGTCTACATACACGGTAAAATCAGGTGATACTTTGTTTTATATTGCTTGGATTACGGGAAATAATTGTTTAAATTTAGC
AAAAATCAATAATATTAAAAATGTAAATGTATTAAAAGTAGATCAAGTGCTAATAGTACGTCGTAATATAATGTGGTTAT
ATTTTGAAAAATTCTTAAGAAAAATTTTTATTCCTTTTGATAGTGGTAATAATGCTTTTAAAAAAATATTATTTTTTGTT
AAAAAACAATTTTTTTATTCTAGTACGTATAACAATATTTGTCCTAATATGGACATGTCTTATAATATGGTTTCTAGTTC
AACAGCATCAGACTCAGTAACAATCAAGAACTGGTATTGGCCAACAAATGGTATAATTATTAATACTTTTTCTGATTCTG
AAAGAGGTAATAAAGGAATTGATATATCTGGCGCTTTAGGGCAACCTATCTTAGCTACCGCTAATGGAAAAGTAGTATAT
ATTGGAAATACATTGAAAGGATACGGTAACTTGATTATCATCAAACATGATAATAACTATCTTAGCGCTTATGCGCATAA
TGATATGATATTAGTTAATGAACAGCAAACAGTTAAGATGGGCGACAAGATTGCAACCATGGGTAACAGCGGAACTAATG
AAGTAAAATTACATTTTGAAATCAGATATAAAGGAAAATCTGTAGATCCTTTATTTTATCTCCAAAATAGGTAA

Upstream 100 bases:

>100_bases
TGTCGAATGCATATGTATCATTCATATATTGTATGATTCTTAAACAAATAAATTATCAATAGAAAATAAGCAGGGAGCAG
AGGAGTTTAGCACATCTATT

Downstream 100 bases:

>100_bases
TTTAAATTGATTACAAATTAATATTATATTTCGAATATACGAAAATATTTTATTTGTATAAATAAATGTTACTTTTTATG
ATTGAATTAATTTAATGATT

Product: lipoprotein NlpD precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MLVDSSRSIIYIIVVLVSLEGCSRDNIYRYHNKCASQSLNSDVTTIYMSQDKKKNIRYPQKIPAVDNIHKYNHTNYSSYH
KSTYTVKSGDTLFYIAWITGNNCLNLAKINNIKNVNVLKVDQVLIVRRNIMWLYFEKFLRKIFIPFDSGNNAFKKILFFV
KKQFFYSSTYNNICPNMDMSYNMVSSSTASDSVTIKNWYWPTNGIIINTFSDSERGNKGIDISGALGQPILATANGKVVY
IGNTLKGYGNLIIIKHDNNYLSAYAHNDMILVNEQQTVKMGDKIATMGNSGTNEVKLHFEIRYKGKSVDPLFYLQNR

Sequences:

>Translated_317_residues
MLVDSSRSIIYIIVVLVSLEGCSRDNIYRYHNKCASQSLNSDVTTIYMSQDKKKNIRYPQKIPAVDNIHKYNHTNYSSYH
KSTYTVKSGDTLFYIAWITGNNCLNLAKINNIKNVNVLKVDQVLIVRRNIMWLYFEKFLRKIFIPFDSGNNAFKKILFFV
KKQFFYSSTYNNICPNMDMSYNMVSSSTASDSVTIKNWYWPTNGIIINTFSDSERGNKGIDISGALGQPILATANGKVVY
IGNTLKGYGNLIIIKHDNNYLSAYAHNDMILVNEQQTVKMGDKIATMGNSGTNEVKLHFEIRYKGKSVDPLFYLQNR
>Mature_317_residues
MLVDSSRSIIYIIVVLVSLEGCSRDNIYRYHNKCASQSLNSDVTTIYMSQDKKKNIRYPQKIPAVDNIHKYNHTNYSSYH
KSTYTVKSGDTLFYIAWITGNNCLNLAKINNIKNVNVLKVDQVLIVRRNIMWLYFEKFLRKIFIPFDSGNNAFKKILFFV
KKQFFYSSTYNNICPNMDMSYNMVSSSTASDSVTIKNWYWPTNGIIINTFSDSERGNKGIDISGALGQPILATANGKVVY
IGNTLKGYGNLIIIKHDNNYLSAYAHNDMILVNEQQTVKMGDKIATMGNSGTNEVKLHFEIRYKGKSVDPLFYLQNR

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=272, Percent_Identity=46.3235294117647, Blast_Score=218, Evalue=4e-58,
Organism=Escherichia coli, GI87082174, Length=241, Percent_Identity=38.1742738589212, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI87082297, Length=120, Percent_Identity=31.6666666666667, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 36294; Mature: 36294

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVDSSRSIIYIIVVLVSLEGCSRDNIYRYHNKCASQSLNSDVTTIYMSQDKKKNIRYPQ
CEECCCCCCEEEEEEEHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCC
KIPAVDNIHKYNHTNYSSYHKSTYTVKSGDTLFYIAWITGNNCLNLAKINNIKNVNVLKV
CCCCCCCHHHCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCEEEEEEECCCCCCEEEEE
DQVLIVRRNIMWLYFEKFLRKIFIPFDSGNNAFKKILFFVKKQFFYSSTYNNICPNMDMS
CEEEEEHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
YNMVSSSTASDSVTIKNWYWPTNGIIINTFSDSERGNKGIDISGALGQPILATANGKVVY
EEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCEEEECCCCCCEEEECCCEEEE
IGNTLKGYGNLIIIKHDNNYLSAYAHNDMILVNEQQTVKMGDKIATMGNSGTNEVKLHFE
ECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECCHHEECCCEEEECCCCCCCEEEEEEE
IRYKGKSVDPLFYLQNR
EEECCCCCCEEEEEECC
>Mature Secondary Structure
MLVDSSRSIIYIIVVLVSLEGCSRDNIYRYHNKCASQSLNSDVTTIYMSQDKKKNIRYPQ
CEECCCCCCEEEEEEEHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCC
KIPAVDNIHKYNHTNYSSYHKSTYTVKSGDTLFYIAWITGNNCLNLAKINNIKNVNVLKV
CCCCCCCHHHCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCEEEEEEECCCCCCEEEEE
DQVLIVRRNIMWLYFEKFLRKIFIPFDSGNNAFKKILFFVKKQFFYSSTYNNICPNMDMS
CEEEEEHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
YNMVSSSTASDSVTIKNWYWPTNGIIINTFSDSERGNKGIDISGALGQPILATANGKVVY
EEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCEEEECCCCCCEEEECCCEEEE
IGNTLKGYGNLIIIKHDNNYLSAYAHNDMILVNEQQTVKMGDKIATMGNSGTNEVKLHFE
ECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECCHHEECCCEEEECCCCCCCEEEEEEE
IRYKGKSVDPLFYLQNR
EEECCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]