Click here to switch to the map view.

The map label for this gene is ocd [H]

Identifier: 68537074

GI number: 68537074

Start: 2306396

End: 2307475

Strand: Direct

Name: ocd [H]

Synonym: jk1979

Alternate gene names: 68537074

Gene position: 2306396-2307475 (Clockwise)

Preceding gene: 68537073

Following gene: 68537075

Centisome position: 93.66

GC content: 59.63

Gene sequence:

>1080_bases
ATGGAACACCTAGCCAATTCCGGCCCATCGCTACGTGTCCTCACTCGTAGTGATCTCGCAGATATAGAACTCCCTCCCGA
ACAAGTCATCCGAGCAGTCGAAGATGGCTACCTTGCACTGGAGTCCGGCGCCTCCCGCTGCCCTACAAAGATGATGATCG
ACCTCCCCGTAGAGAGTCGCGACTCAATCGCCTTTTCCATGCTCGGTTTCGACGCCGCGCGAGACCTCGTTGGTTACAAG
ACCTCATACCGCAAAGGCAGCGACAACCGCGACCAGTACTACACCACAATTACCCTGTACGACGACGAAACCGGTCTGCC
TTACGCCCTCATGGACTGCCAGAAAATCGGCGCCTCCCGCACTCCGGCAACCACCGCGCTCATCGCCCGCGAATGCGCAC
GCTCCGGCGCCACCTCCGTAACGATGCTCGGAACCGGGCTGCAGAGTATGAACACGCTGGCATATCTGCTCACCGTCCTG
CCGAATCTCCAGCATCTCCGCTTACACGGCACCCATCCCGAGGGCGTCAAGGACACACTTGACGTTCTGCAACGCTGGTT
CCCGGACCGCTCCGTCGAACTCATCGGAACTGCCAAATCACTGAATAACACGAGCTCAGATAGCATTTCTCACGCAGTGA
CCTCAGCTCGCGAAATCATCGCCGCGGACACCGACGCCGTGCGCGATGCAGTCTCGACCAGCGACATCACCGTGGTGGCG
TCAGGTCGTGCGTGGCACCCAAAGATTCATACCAGCTGGATTCCCGAGGGTGGACTGTTAATCTCCGTAGCCTCGAAGGG
TGTAGCCGATGGCGCCGTCGCGGAAGCCGACCGTGTCATCGCAACCAGCAAAGGGCAGTTCGACCTCGTCGGTCAGAGGC
TCCTCCAGGGGCGCAATGTGCAGCTCGACGCCACTCTCCCAGACATCCTCGCCAGCCAGGTTCCGGGTCGTATCAGCGAC
TCTGAACGCATCTTCGCTTTCTGCAGCGGAATGATCGTTACGGACATTCCCATCGCTCACGAACTCGCCGTACGGGCGTT
TTCCGCAGGAAGGGGAAGCGAGGTCACACTGTGGAGCTAG

Upstream 100 bases:

>100_bases
CGCAAGGCTCACTACCGCTGTGGCCACCGGGATTGCATCGCAGGCAGCCCGGGACAATTAGAAACTTCCCCTCACAAGAC
AAGGCTCAACAAGCGCAACC

Downstream 100 bases:

>100_bases
CGCCCAGCCTACCACCGCTCGTACAGGCGTGGGAGGAGGAACTGTTCAACCACCCCTGGGCTCTGCCGCAGATGCGGGAG
TTGGCGTCGGGTCCCTTCCA

Product: putative ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD [H]

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MEHLANSGPSLRVLTRSDLADIELPPEQVIRAVEDGYLALESGASRCPTKMMIDLPVESRDSIAFSMLGFDAARDLVGYK
TSYRKGSDNRDQYYTTITLYDDETGLPYALMDCQKIGASRTPATTALIARECARSGATSVTMLGTGLQSMNTLAYLLTVL
PNLQHLRLHGTHPEGVKDTLDVLQRWFPDRSVELIGTAKSLNNTSSDSISHAVTSAREIIAADTDAVRDAVSTSDITVVA
SGRAWHPKIHTSWIPEGGLLISVASKGVADGAVAEADRVIATSKGQFDLVGQRLLQGRNVQLDATLPDILASQVPGRISD
SERIFAFCSGMIVTDIPIAHELAVRAFSAGRGSEVTLWS

Sequences:

>Translated_359_residues
MEHLANSGPSLRVLTRSDLADIELPPEQVIRAVEDGYLALESGASRCPTKMMIDLPVESRDSIAFSMLGFDAARDLVGYK
TSYRKGSDNRDQYYTTITLYDDETGLPYALMDCQKIGASRTPATTALIARECARSGATSVTMLGTGLQSMNTLAYLLTVL
PNLQHLRLHGTHPEGVKDTLDVLQRWFPDRSVELIGTAKSLNNTSSDSISHAVTSAREIIAADTDAVRDAVSTSDITVVA
SGRAWHPKIHTSWIPEGGLLISVASKGVADGAVAEADRVIATSKGQFDLVGQRLLQGRNVQLDATLPDILASQVPGRISD
SERIFAFCSGMIVTDIPIAHELAVRAFSAGRGSEVTLWS
>Mature_359_residues
MEHLANSGPSLRVLTRSDLADIELPPEQVIRAVEDGYLALESGASRCPTKMMIDLPVESRDSIAFSMLGFDAARDLVGYK
TSYRKGSDNRDQYYTTITLYDDETGLPYALMDCQKIGASRTPATTALIARECARSGATSVTMLGTGLQSMNTLAYLLTVL
PNLQHLRLHGTHPEGVKDTLDVLQRWFPDRSVELIGTAKSLNNTSSDSISHAVTSAREIIAADTDAVRDAVSTSDITVVA
SGRAWHPKIHTSWIPEGGLLISVASKGVADGAVAEADRVIATSKGQFDLVGQRLLQGRNVQLDATLPDILASQVPGRISD
SERIFAFCSGMIVTDIPIAHELAVRAFSAGRGSEVTLWS

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 38616; Mature: 38616

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHLANSGPSLRVLTRSDLADIELPPEQVIRAVEDGYLALESGASRCPTKMMIDLPVESR
CCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCEEEECCCCCCCCCEEEEEECCCCC
DSIAFSMLGFDAARDLVGYKTSYRKGSDNRDQYYTTITLYDDETGLPYALMDCQKIGASR
CCEEEEHHHHHHHHHHHCCCHHCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHCCCC
TPATTALIARECARSGATSVTMLGTGLQSMNTLAYLLTVLPNLQHLRLHGTHPEGVKDTL
CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
DVLQRWFPDRSVELIGTAKSLNNTSSDSISHAVTSAREIIAADTDAVRDAVSTSDITVVA
HHHHHHCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEE
SGRAWHPKIHTSWIPEGGLLISVASKGVADGAVAEADRVIATSKGQFDLVGQRLLQGRNV
CCCEECCCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCEEEECCCCHHHHHHHHHCCCCE
QLDATLPDILASQVPGRISDSERIFAFCSGMIVTDIPIAHELAVRAFSAGRGSEVTLWS
EEECCCHHHHHHHCCCCCCCCHHHHHHHCCCEEECCCHHHHHHHHHHCCCCCCEEEEEC
>Mature Secondary Structure
MEHLANSGPSLRVLTRSDLADIELPPEQVIRAVEDGYLALESGASRCPTKMMIDLPVESR
CCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCEEEECCCCCCCCCEEEEEECCCCC
DSIAFSMLGFDAARDLVGYKTSYRKGSDNRDQYYTTITLYDDETGLPYALMDCQKIGASR
CCEEEEHHHHHHHHHHHCCCHHCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHCCCC
TPATTALIARECARSGATSVTMLGTGLQSMNTLAYLLTVLPNLQHLRLHGTHPEGVKDTL
CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
DVLQRWFPDRSVELIGTAKSLNNTSSDSISHAVTSAREIIAADTDAVRDAVSTSDITVVA
HHHHHHCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEE
SGRAWHPKIHTSWIPEGGLLISVASKGVADGAVAEADRVIATSKGQFDLVGQRLLQGRNV
CCCEECCCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCEEEECCCCHHHHHHHHHCCCCE
QLDATLPDILASQVPGRISDSERIFAFCSGMIVTDIPIAHELAVRAFSAGRGSEVTLWS
EEECCCHHHHHHHCCCCCCCCHHHHHHHCCCEEECCCHHHHHHHHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7873778 [H]