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The map label for this gene is tnp3516d2 [H]

Identifier: 68535542

GI number: 68535542

Start: 577027

End: 577698

Strand: Direct

Name: tnp3516d2 [H]

Synonym: jk0472

Alternate gene names: 68535542

Gene position: 577027-577698 (Clockwise)

Preceding gene: 68535541

Following gene: 68535543

Centisome position: 23.43

GC content: 54.17

Gene sequence:

>672_bases
GTGCTACTTGACCTGCGTAACCAGGGGTGGGTGGTCAACCACAAACTCGTGTACAAACTCATGTGCGAGATGGGGCTGCG
AGCCAAGATCCGCCAACGTAGACCTTATGTTTCCTACACCGGGACGATCAGTCACATCGCTGACAACAAACTTGACCGCA
AGTTCACCCCGGATCAGCCAAATACCGTCTTTGTCAGCGACGTCACCGAGTTTAGGGTTGCAGGTCGCAAGGTCTACCTG
TCACCGGTGATGGACCTGTTCGATCGCTCAATTGTTGCCCACACCGTGGCTACATCACCGTCGACAGCGTTTACCGCAGA
GTCTTTAACCAAGGCGATTAAAACGTGTGCGCCTGAACCCGGGTGGATGATGCACACTGACCAAGGTTTCCAGTACCAGC
ACGCCTCGTGGCGCGACCTGATCGGTGACAACGGCGGTGTTCAGTCGATGTCGCGTAAAGCCAACTGTTACGACAACGCG
GTCATGGAGAACTTCTTCGGGCACGTGAAAACCGAGATGTACCACGGTGAAGTCTTCGACACCGTCGCAGAATTCAAGCA
AGCAATCGACGAATACATTCAGTGGTACAACACCGAACGCATCCAACAACGACTCAAGGGCCTGACCCCGATGCAATATC
GGAATCAGACCCTTGAAGCCCTAACCGCCTAG

Upstream 100 bases:

>100_bases
CCACAAGAAACGACTCAGTAAGCCAGATAAGCACGCCGCGCTCAAGGCCGAGATCCGGGAAAGCTTCGAGCGCAACAAGC
ATCGCTACGGCTACCGACGA

Downstream 100 bases:

>100_bases
AATTAAACCAGTCCAACTTTCGGGGGCTAGTTCATAATTGACCGGGGGTTTTCTTGTATTAGTGCTAGCGTGCCCCGTGC
TAATCTAACCCCATCGGAAA

Product: transposase for IS3516d

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MLLDLRNQGWVVNHKLVYKLMCEMGLRAKIRQRRPYVSYTGTISHIADNKLDRKFTPDQPNTVFVSDVTEFRVAGRKVYL
SPVMDLFDRSIVAHTVATSPSTAFTAESLTKAIKTCAPEPGWMMHTDQGFQYQHASWRDLIGDNGGVQSMSRKANCYDNA
VMENFFGHVKTEMYHGEVFDTVAEFKQAIDEYIQWYNTERIQQRLKGLTPMQYRNQTLEALTA

Sequences:

>Translated_223_residues
MLLDLRNQGWVVNHKLVYKLMCEMGLRAKIRQRRPYVSYTGTISHIADNKLDRKFTPDQPNTVFVSDVTEFRVAGRKVYL
SPVMDLFDRSIVAHTVATSPSTAFTAESLTKAIKTCAPEPGWMMHTDQGFQYQHASWRDLIGDNGGVQSMSRKANCYDNA
VMENFFGHVKTEMYHGEVFDTVAEFKQAIDEYIQWYNTERIQQRLKGLTPMQYRNQTLEALTA
>Mature_223_residues
MLLDLRNQGWVVNHKLVYKLMCEMGLRAKIRQRRPYVSYTGTISHIADNKLDRKFTPDQPNTVFVSDVTEFRVAGRKVYL
SPVMDLFDRSIVAHTVATSPSTAFTAESLTKAIKTCAPEPGWMMHTDQGFQYQHASWRDLIGDNGGVQSMSRKANCYDNA
VMENFFGHVKTEMYHGEVFDTVAEFKQAIDEYIQWYNTERIQQRLKGLTPMQYRNQTLEALTA

Specific function: Involved in the transposition of the insertion sequence IS150 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=190, Percent_Identity=27.3684210526316, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI1789981, Length=215, Percent_Identity=43.7209302325581, Blast_Score=199, Evalue=9e-53,
Organism=Escherichia coli, GI1788405, Length=216, Percent_Identity=31.0185185185185, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787263, Length=216, Percent_Identity=31.0185185185185, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1786753, Length=216, Percent_Identity=31.0185185185185, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1786570, Length=216, Percent_Identity=31.0185185185185, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1786490, Length=216, Percent_Identity=31.0185185185185, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 25674; Mature: 25674

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLDLRNQGWVVNHKLVYKLMCEMGLRAKIRQRRPYVSYTGTISHIADNKLDRKFTPDQP
CEEEECCCCEEEHHHHHHHHHHHHCHHHHHHHCCCCEEECCHHHHHHCCCCCCCCCCCCC
NTVFVSDVTEFRVAGRKVYLSPVMDLFDRSIVAHTVATSPSTAFTAESLTKAIKTCAPEP
CEEEEECHHHHHHCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
GWMMHTDQGFQYQHASWRDLIGDNGGVQSMSRKANCYDNAVMENFFGHVKTEMYHGEVFD
CEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHH
TVAEFKQAIDEYIQWYNTERIQQRLKGLTPMQYRNQTLEALTA
HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MLLDLRNQGWVVNHKLVYKLMCEMGLRAKIRQRRPYVSYTGTISHIADNKLDRKFTPDQP
CEEEECCCCEEEHHHHHHHHHHHHCHHHHHHHCCCCEEECCHHHHHHCCCCCCCCCCCCC
NTVFVSDVTEFRVAGRKVYLSPVMDLFDRSIVAHTVATSPSTAFTAESLTKAIKTCAPEP
CEEEEECHHHHHHCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
GWMMHTDQGFQYQHASWRDLIGDNGGVQSMSRKANCYDNAVMENFFGHVKTEMYHGEVFD
CEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHH
TVAEFKQAIDEYIQWYNTERIQQRLKGLTPMQYRNQTLEALTA
HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2841644; 2541046; 8041620; 9278503 [H]