Click here to switch to the map view.

The map label for this gene is tnp3516d1

Identifier: 68535541

GI number: 68535541

Start: 576422

End: 576838

Strand: Direct

Name: tnp3516d1

Synonym: jk0471

Alternate gene names: NA

Gene position: 576422-576838 (Clockwise)

Preceding gene: 68535539

Following gene: 68535542

Centisome position: 23.41

GC content: 54.44

Gene sequence:

>417_bases
ATGGGCGAAACAGCCGCTGCCAATGCTCTTGGTGTCCCCAAAAACGCCGTCCGTTTGCTCTATCGTCGGTTTCAGCTGCA
TGGCAGGCTATGTCTTGTGGAGAAACCGACAAAGCAGCAGTATTCGTTCGAGTTCAAAAAGGAAGTTGTCGAGCGCCACC
TTTCCGGCGAGACAAAGATGAATCTTGCACGTGAATTTAACCTGTCGTCGGACCAGCTGGTCAGTTATTGGTCGCGGCAA
TGGCGTAAAGGTGGCGACGAGGCGTTAAAACCGAAGCCGAAGGGCAGACCCAAAGGCTCGGCTGCGCCAAAGCCGCTGAC
CGAAGAGGAGAAGCTACGGCGCCGGATCGCACGATTGGAAGCGGAAAACGCTTATCTAAAAAAATTGCGGGACTTGAGGA
ACCAGAGACGCGCCTGA

Upstream 100 bases:

>100_bases
TCCGGAGCATATACTTTCCGGAAACCTACAGGTCAATCCGTGAAAATCCGCGATTCCGGACACACTTTTTGACCCTTAAC
CCGAGTGTTTCGAGCAAGGC

Downstream 100 bases:

>100_bases
AAGTCCAGGCGATTGTCATCCTCAAGTCGCACCACCGCCTGGAGTATCTCCTAAAGGCAGCAGGTATCCCACGGTCGACG
TTCTTCTACCACAAGAAACG

Product: transposase for IS3516d

Products: NA

Alternate protein names: Transposase For IS; Transposase For Insertion Sequence; Transposase ; ISPsy8 Transposase OrfA; Transposase And Inactivated Derivative; Insertion Element

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MGETAAANALGVPKNAVRLLYRRFQLHGRLCLVEKPTKQQYSFEFKKEVVERHLSGETKMNLAREFNLSSDQLVSYWSRQ
WRKGGDEALKPKPKGRPKGSAAPKPLTEEEKLRRRIARLEAENAYLKKLRDLRNQRRA

Sequences:

>Translated_138_residues
MGETAAANALGVPKNAVRLLYRRFQLHGRLCLVEKPTKQQYSFEFKKEVVERHLSGETKMNLAREFNLSSDQLVSYWSRQ
WRKGGDEALKPKPKGRPKGSAAPKPLTEEEKLRRRIARLEAENAYLKKLRDLRNQRRA
>Mature_137_residues
GETAAANALGVPKNAVRLLYRRFQLHGRLCLVEKPTKQQYSFEFKKEVVERHLSGETKMNLAREFNLSSDQLVSYWSRQW
RKGGDEALKPKPKGRPKGSAAPKPLTEEEKLRRRIARLEAENAYLKKLRDLRNQRRA

Specific function: Unknown

COG id: COG2963

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16033; Mature: 15902

Theoretical pI: Translated: 11.07; Mature: 11.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGETAAANALGVPKNAVRLLYRRFQLHGRLCLVEKPTKQQYSFEFKKEVVERHLSGETKM
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHH
NLAREFNLSSDQLVSYWSRQWRKGGDEALKPKPKGRPKGSAAPKPLTEEEKLRRRIARLE
HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
AENAYLKKLRDLRNQRRA
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GETAAANALGVPKNAVRLLYRRFQLHGRLCLVEKPTKQQYSFEFKKEVVERHLSGETKM
CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHH
NLAREFNLSSDQLVSYWSRQWRKGGDEALKPKPKGRPKGSAAPKPLTEEEKLRRRIARLE
HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
AENAYLKKLRDLRNQRRA
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA