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The map label for this gene is carD [H]

Identifier: 68535372

GI number: 68535372

Start: 375915

End: 376505

Strand: Direct

Name: carD [H]

Synonym: jk0307

Alternate gene names: 68535372

Gene position: 375915-376505 (Clockwise)

Preceding gene: 68535369

Following gene: 68535373

Centisome position: 15.27

GC content: 66.84

Gene sequence:

>591_bases
ATGGAGTTCGCAGTCGGAGATACGGTCGTTTACCCGCACCACGGCGCCGCCGTCATCGAGGGCATCGAGCAGCGGGAGTT
CAAGGGGGAAACCGTCGACTACCTGGTGCTGCGCATCAACCAGGGCGATCTTTCCGTCCGCGTTCCGGCCGCGAATGCAG
AGAAGGTCGGCGTGCGCGACGTGGTGGGCGAAGAAGGCCTGCGCAAGGTCTTCTCCGTGCTGCGGGAGACCGACGTGGAA
GAGGCCGGCAACTGGTCCCGCCGCTACAAGGCGAACCAGGAGCGCCTGACCAGTGGCGATGTGAACAAGGTCGCCGAAGT
CGTGCGCGACCTGTGGCGCCGTGACCAGGACCGCGGCCTGTCCGCCGGTGAGAAGCGCATGCTGGCCAAGGCCCGCCAGA
TCCTCGTGGGCGAACTCGCACTGGCCGAGGGCGTGGACGACAAGAAGACCGACACGCTGCTGGCCGAGATGCAGGCCGCC
ATCAAGCGCCACCGCGAGGCTGCCGCTGCAGCCCGTGCCGCAGGCGTGGACGAGGACTCCAAGTCCGGTGGCTCCATCGA
TCTGGACGACGAGCTGGACGGCGAAGACTAA

Upstream 100 bases:

>100_bases
ATGCCCCAAATGCGGGTAGTGCGGTCGATTACGGTAGAATCTAACGGGTATTTACGCAGTGCCTGTCACAGCCTTTCGGA
AGGACGTTAGAGGAACACTT

Downstream 100 bases:

>100_bases
GCCGGGCAGGCGCTGTGACAGCGAACGTCTACGCACTCGTCGCCGCCGCCGGTAGCGGCACTCGCCTGGGTTTCGATACC
CCGAAGGCTTTCGTCGAGCT

Product: putative transcription factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MEFAVGDTVVYPHHGAAVIEGIEQREFKGETVDYLVLRINQGDLSVRVPAANAEKVGVRDVVGEEGLRKVFSVLRETDVE
EAGNWSRRYKANQERLTSGDVNKVAEVVRDLWRRDQDRGLSAGEKRMLAKARQILVGELALAEGVDDKKTDTLLAEMQAA
IKRHREAAAAARAAGVDEDSKSGGSIDLDDELDGED

Sequences:

>Translated_196_residues
MEFAVGDTVVYPHHGAAVIEGIEQREFKGETVDYLVLRINQGDLSVRVPAANAEKVGVRDVVGEEGLRKVFSVLRETDVE
EAGNWSRRYKANQERLTSGDVNKVAEVVRDLWRRDQDRGLSAGEKRMLAKARQILVGELALAEGVDDKKTDTLLAEMQAA
IKRHREAAAAARAAGVDEDSKSGGSIDLDDELDGED
>Mature_196_residues
MEFAVGDTVVYPHHGAAVIEGIEQREFKGETVDYLVLRINQGDLSVRVPAANAEKVGVRDVVGEEGLRKVFSVLRETDVE
EAGNWSRRYKANQERLTSGDVNKVAEVVRDLWRRDQDRGLSAGEKRMLAKARQILVGELALAEGVDDKKTDTLLAEMQAA
IKRHREAAAAARAAGVDEDSKSGGSIDLDDELDGED

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 21486; Mature: 21486

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFAVGDTVVYPHHGAAVIEGIEQREFKGETVDYLVLRINQGDLSVRVPAANAEKVGVRD
CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEECCCCCCCCCHHH
VVGEEGLRKVFSVLRETDVEEAGNWSRRYKANQERLTSGDVNKVAEVVRDLWRRDQDRGL
HHHHHHHHHHHHHHHHCCHHHHCCHHHHHHCCHHHCCCCCHHHHHHHHHHHHHCCHHCCC
SAGEKRMLAKARQILVGELALAEGVDDKKTDTLLAEMQAAIKRHREAAAAARAAGVDEDS
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KSGGSIDLDDELDGED
CCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEFAVGDTVVYPHHGAAVIEGIEQREFKGETVDYLVLRINQGDLSVRVPAANAEKVGVRD
CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEECCCCCCCCCHHH
VVGEEGLRKVFSVLRETDVEEAGNWSRRYKANQERLTSGDVNKVAEVVRDLWRRDQDRGL
HHHHHHHHHHHHHHHHCCHHHHCCHHHHHHCCHHHCCCCCHHHHHHHHHHHHHCCHHCCC
SAGEKRMLAKARQILVGELALAEGVDDKKTDTLLAEMQAAIKRHREAAAAARAAGVDEDS
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KSGGSIDLDDELDGED
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]