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The map label for this gene is ybdK [C]

Identifier: 68535329

GI number: 68535329

Start: 323586

End: 324764

Strand: Direct

Name: ybdK [C]

Synonym: jk0264

Alternate gene names: 68535329

Gene position: 323586-324764 (Clockwise)

Preceding gene: 68535328

Following gene: 68535332

Centisome position: 13.14

GC content: 63.7

Gene sequence:

>1179_bases
ATGGACTTCCCGGGTTCCGCACCTTCCGTCGGTATTGAGTGGGAAGTCGCGCTCGTCGACCCCGAAACCCGCGACCTGGT
CCCACGCGCCGCTGAACTGATAGCGCGGATGGACGAGGTACACCCCGGCCACAAGGTCGTCCGCGAATTCCTGGCCAACA
CCGTGGAAATGGTCTCCGGCGTGCACGACACGATCCCGGAGGCGGTCGAGGACCTGCACGTCCAGGCGAAGCAACTAATG
GAATGCGCGGATGACATCGGCGTGAACCTGTTTTCTGCGGGCACGCATCCTTTCGCGCACTGGGGGGATCAGAAGCTCAG
CGAAAAGGGCAGCTACCAGGAGATCATTGAGCGCACCCAGTACTGGGGGCGCCAGATGCTGATTTGGGGAATCCACGTGC
ACGTGGGGGTGGGCTCCAAGGAAAAAGTGTGGCCCATCATCAATGCGTTGATGACGCACTACCCGCACATCCTGGCCATG
TCCGCCAGCTCGCCCGCCTGGGAAGGGCTGGATACCGGCTACTCCTCTAACCGCACCCTGTTGTACCAGCAGCTGCCCAC
CGCAGGCATGCCCTACCAGTTTGAAAACTGGGAACAGTGGGAGGAGTTCAACCGGGATCAGGATCTATCGGGAGTGATCA
ACCACACCGGATCCATGCACTTCGACGTGCGCCCGACAAAGTACGGCACGGTGGAAACCCGTTTTGCGGACGCCACGATG
GAGCTGTGGGAGCTTGCCGCCATCGCCGCCTATACCCACTGCCTAGTGGTGTACTTCGAGCGCCGTCTGGACGCCGGCCA
CGAGCTGCCGACCCTGCAGCCCTGGCATGTCGCGGAAAACAAGTGGCGCGCGGCCCGCTACGGCCTGGACGCACTGATTA
TTACCGACCGGGAGACCAACGAGGCGCTGGTCACGGACGAGCTGGACGCCTGGGTGGATAGGCTCGCTCCGCTGTCCGAG
GAGCTGGGCTGTGCGGCAGAGCTGCAGGATGTGCGCAAACTGATTGCCCGCGGCGGGGATTACGCTCTGCAGCGCGCCGC
GGCTCGCAAGCACGGCGCAGCACCGGAACCTGGCACCCGCACACGTGGAGACGACGGGGTAGAGGGCGGCTTCACGCAGC
CGGAGGCGTGGATCGCCGCAGTGGACCTGACTGTCGATTCCCTGCGGAAGTCGCTGTAG

Upstream 100 bases:

>100_bases
AGCGCCCCGCGGGTGTCGTTGTTGTGACAACAAATGACATGCCCCGCTAAAGTAAAAGCGTTCTTCTAACTTCTGTCTAC
ATATCTTCTAAGGGGCCACA

Downstream 100 bases:

>100_bases
CTTCGCGCTCCTAGAAGTGCAGGCGGGCAGCCGCGTTGCACAGGGCGTTAGCGATGGAGGTGTCGCGGTCCGCGCCGAAG
CCAACTGCCCACACGCGCTT

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MDFPGSAPSVGIEWEVALVDPETRDLVPRAAELIARMDEVHPGHKVVREFLANTVEMVSGVHDTIPEAVEDLHVQAKQLM
ECADDIGVNLFSAGTHPFAHWGDQKLSEKGSYQEIIERTQYWGRQMLIWGIHVHVGVGSKEKVWPIINALMTHYPHILAM
SASSPAWEGLDTGYSSNRTLLYQQLPTAGMPYQFENWEQWEEFNRDQDLSGVINHTGSMHFDVRPTKYGTVETRFADATM
ELWELAAIAAYTHCLVVYFERRLDAGHELPTLQPWHVAENKWRAARYGLDALIITDRETNEALVTDELDAWVDRLAPLSE
ELGCAAELQDVRKLIARGGDYALQRAAARKHGAAPEPGTRTRGDDGVEGGFTQPEAWIAAVDLTVDSLRKSL

Sequences:

>Translated_392_residues
MDFPGSAPSVGIEWEVALVDPETRDLVPRAAELIARMDEVHPGHKVVREFLANTVEMVSGVHDTIPEAVEDLHVQAKQLM
ECADDIGVNLFSAGTHPFAHWGDQKLSEKGSYQEIIERTQYWGRQMLIWGIHVHVGVGSKEKVWPIINALMTHYPHILAM
SASSPAWEGLDTGYSSNRTLLYQQLPTAGMPYQFENWEQWEEFNRDQDLSGVINHTGSMHFDVRPTKYGTVETRFADATM
ELWELAAIAAYTHCLVVYFERRLDAGHELPTLQPWHVAENKWRAARYGLDALIITDRETNEALVTDELDAWVDRLAPLSE
ELGCAAELQDVRKLIARGGDYALQRAAARKHGAAPEPGTRTRGDDGVEGGFTQPEAWIAAVDLTVDSLRKSL
>Mature_392_residues
MDFPGSAPSVGIEWEVALVDPETRDLVPRAAELIARMDEVHPGHKVVREFLANTVEMVSGVHDTIPEAVEDLHVQAKQLM
ECADDIGVNLFSAGTHPFAHWGDQKLSEKGSYQEIIERTQYWGRQMLIWGIHVHVGVGSKEKVWPIINALMTHYPHILAM
SASSPAWEGLDTGYSSNRTLLYQQLPTAGMPYQFENWEQWEEFNRDQDLSGVINHTGSMHFDVRPTKYGTVETRFADATM
ELWELAAIAAYTHCLVVYFERRLDAGHELPTLQPWHVAENKWRAARYGLDALIITDRETNEALVTDELDAWVDRLAPLSE
ELGCAAELQDVRKLIARGGDYALQRAAARKHGAAPEPGTRTRGDDGVEGGFTQPEAWIAAVDLTVDSLRKSL

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=348, Percent_Identity=26.7241379310345, Blast_Score=145, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_CORJK (Q4JXP1)

Other databases:

- EMBL:   CR931997
- RefSeq:   YP_250034.1
- ProteinModelPortal:   Q4JXP1
- SMR:   Q4JXP1
- STRING:   Q4JXP1
- GeneID:   3432737
- GenomeReviews:   CR931997_GR
- KEGG:   cjk:jk0264
- NMPDR:   fig|306537.3.peg.807
- eggNOG:   COG2170
- HOGENOM:   HBG564677
- OMA:   NWQEFAG
- ProtClustDB:   PRK13517
- BioCyc:   CJEI306537:JK0264-MONOMER
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 43905; Mature: 43905

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFPGSAPSVGIEWEVALVDPETRDLVPRAAELIARMDEVHPGHKVVREFLANTVEMVSG
CCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VHDTIPEAVEDLHVQAKQLMECADDIGVNLFSAGTHPFAHWGDQKLSEKGSYQEIIERTQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHCCCHHHHCCCCHHHHHHHHH
YWGRQMLIWGIHVHVGVGSKEKVWPIINALMTHYPHILAMSASSPAWEGLDTGYSSNRTL
HCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCEE
LYQQLPTAGMPYQFENWEQWEEFNRDQDLSGVINHTGSMHFDVRPTKYGTVETRFADATM
EEEECCCCCCCCCCCCHHHHHHCCCCCCHHHHHHCCCCEEEEECCCCCCCEEHHHHHHHH
ELWELAAIAAYTHCLVVYFERRLDAGHELPTLQPWHVAENKWRAARYGLDALIITDRETN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEECCCCC
EALVTDELDAWVDRLAPLSEELGCAAELQDVRKLIARGGDYALQRAAARKHGAAPEPGTR
CCHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCC
TRGDDGVEGGFTQPEAWIAAVDLTVDSLRKSL
CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCC
>Mature Secondary Structure
MDFPGSAPSVGIEWEVALVDPETRDLVPRAAELIARMDEVHPGHKVVREFLANTVEMVSG
CCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VHDTIPEAVEDLHVQAKQLMECADDIGVNLFSAGTHPFAHWGDQKLSEKGSYQEIIERTQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHCCCHHHHCCCCHHHHHHHHH
YWGRQMLIWGIHVHVGVGSKEKVWPIINALMTHYPHILAMSASSPAWEGLDTGYSSNRTL
HCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCEE
LYQQLPTAGMPYQFENWEQWEEFNRDQDLSGVINHTGSMHFDVRPTKYGTVETRFADATM
EEEECCCCCCCCCCCCHHHHHHCCCCCCHHHHHHCCCCEEEEECCCCCCCEEHHHHHHHH
ELWELAAIAAYTHCLVVYFERRLDAGHELPTLQPWHVAENKWRAARYGLDALIITDRETN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEECCCCC
EALVTDELDAWVDRLAPLSEELGCAAELQDVRKLIARGGDYALQRAAARKHGAAPEPGTR
CCHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCC
TRGDDGVEGGFTQPEAWIAAVDLTVDSLRKSL
CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA