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The map label for this gene is ytrB [H]

Identifier: 68535152

GI number: 68535152

Start: 105763

End: 106695

Strand: Direct

Name: ytrB [H]

Synonym: jk0089

Alternate gene names: 68535152

Gene position: 105763-106695 (Clockwise)

Preceding gene: 68535151

Following gene: 68535153

Centisome position: 4.29

GC content: 62.06

Gene sequence:

>933_bases
ATGATTGCCACTACGTATCCCGACGCAGCCTCTGGCGTCGCTCCCGACATCGAGCTGCGCGACGTTAGGCGCAAGCTCGG
CTCCACTCACGCCCTCGATGGCGTGACGGCGCACCTGCCAGGTGGCCGCGTCTATGGCCTTATTGGCCGCAACGGCGCTG
GTAAGACCACTCTGCTGCGCACAATTGCCGGACAACTGCGCGCCAAGGGCGAGGTCCTTATTGGCGGTCAGCCGGTGTAC
GACAACACGGAAGTACTGAACAGCTTGATCCTGTCTGGTCCCGATGTGCCGTGGCCCGCAGATATTAAGGTCAAGCAGTT
ACTCAGTGTGGTCGCCGCCCGCTGGGAGACCTGGGATCAGCGCTATGCGGACCAGCTCTGCGAAGACTTCGAGGTCGATA
CGCGCAAACCCCTGTCTAAACTCTCGCGCGGACAAAAGTCCCTGGTCTCGATCGTTATTGGGCTGGCCGCACAGTGCCCC
GTCACTCTCCTCGACGAGCCCTACCTAGGCCTTGACGTGCAGAACCGCGAGCTGTTCTACAAGCATCTCTTGCAGGATGT
GGAGCGCAATCCCCGCACCTTTATCCTTTCGACCCACCACGTCGACGATGCTGCCCGCATCCTCGATTCCGTCGTCCTCC
TCGATAAGGGCCGCATTACAGGAGTCGGCACCCTCGACGCCATCACCGAACGCATCGCGATCCTCTCTGGTTCCGCCGCG
GCCGTCGAAGCCACGCTTGGGGAACTGGGGGTTGTTGATTCTGTTCTTAGTGACGCCACGTCCTCCGGCCTACGCAGGGT
AGTCCTTGACACTCACGGGGCGGAGGCCAATAGCGTGCGGGATCTCGCCGCCCGCATCGAGGGCAGCGGAGTGCGTGTAA
CCAGCGCGGACCTGGAGCAAGCGGTGCTGGCTCTGACCGGAAGGGAGTTCTAG

Upstream 100 bases:

>100_bases
ATTTGGTTCCCCTCGTCGACGAGGCCGCCAAGTTGGGCATGAATCGCACACAGCTGAAAACCCTCATGGACAAAGTCGCA
GAAAGTCGAGGACTCTACGA

Downstream 100 bases:

>100_bases
CTTTGGAGACCACCTATCGACCCCTGCCCTGGGGAACGCACTGGAAACTGGCCATGCGCCAGCTGCTGCCTAAAGCTGGG
AACCTTGGTTTTGGCGCCGT

Product: putative ABC transport system, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MIATTYPDAASGVAPDIELRDVRRKLGSTHALDGVTAHLPGGRVYGLIGRNGAGKTTLLRTIAGQLRAKGEVLIGGQPVY
DNTEVLNSLILSGPDVPWPADIKVKQLLSVVAARWETWDQRYADQLCEDFEVDTRKPLSKLSRGQKSLVSIVIGLAAQCP
VTLLDEPYLGLDVQNRELFYKHLLQDVERNPRTFILSTHHVDDAARILDSVVLLDKGRITGVGTLDAITERIAILSGSAA
AVEATLGELGVVDSVLSDATSSGLRRVVLDTHGAEANSVRDLAARIEGSGVRVTSADLEQAVLALTGREF

Sequences:

>Translated_310_residues
MIATTYPDAASGVAPDIELRDVRRKLGSTHALDGVTAHLPGGRVYGLIGRNGAGKTTLLRTIAGQLRAKGEVLIGGQPVY
DNTEVLNSLILSGPDVPWPADIKVKQLLSVVAARWETWDQRYADQLCEDFEVDTRKPLSKLSRGQKSLVSIVIGLAAQCP
VTLLDEPYLGLDVQNRELFYKHLLQDVERNPRTFILSTHHVDDAARILDSVVLLDKGRITGVGTLDAITERIAILSGSAA
AVEATLGELGVVDSVLSDATSSGLRRVVLDTHGAEANSVRDLAARIEGSGVRVTSADLEQAVLALTGREF
>Mature_310_residues
MIATTYPDAASGVAPDIELRDVRRKLGSTHALDGVTAHLPGGRVYGLIGRNGAGKTTLLRTIAGQLRAKGEVLIGGQPVY
DNTEVLNSLILSGPDVPWPADIKVKQLLSVVAARWETWDQRYADQLCEDFEVDTRKPLSKLSRGQKSLVSIVIGLAAQCP
VTLLDEPYLGLDVQNRELFYKHLLQDVERNPRTFILSTHHVDDAARILDSVVLLDKGRITGVGTLDAITERIAILSGSAA
AVEATLGELGVVDSVLSDATSSGLRRVVLDTHGAEANSVRDLAARIEGSGVRVTSADLEQAVLALTGREF

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI6005701, Length=198, Percent_Identity=28.2828282828283, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI27881501, Length=246, Percent_Identity=26.4227642276423, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI30795238, Length=246, Percent_Identity=26.4227642276423, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI27436953, Length=199, Percent_Identity=28.643216080402, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI21536376, Length=206, Percent_Identity=26.6990291262136, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI27477115, Length=206, Percent_Identity=28.1553398058252, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI153792144, Length=211, Percent_Identity=26.0663507109005, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI105990541, Length=201, Percent_Identity=26.3681592039801, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI27262624, Length=202, Percent_Identity=24.7524752475248, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI27262626, Length=202, Percent_Identity=24.7524752475248, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI31657092, Length=222, Percent_Identity=26.5765765765766, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI48994943, Length=247, Percent_Identity=26.7206477732794, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790739, Length=217, Percent_Identity=28.110599078341, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786803, Length=210, Percent_Identity=28.0952380952381, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081782, Length=225, Percent_Identity=25.3333333333333, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786345, Length=220, Percent_Identity=28.6363636363636, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788450, Length=224, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790467, Length=218, Percent_Identity=29.8165137614679, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787164, Length=202, Percent_Identity=27.7227722772277, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=233, Percent_Identity=30.0429184549356, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71983516, Length=233, Percent_Identity=30.0429184549356, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71983510, Length=233, Percent_Identity=30.0429184549356, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17510237, Length=218, Percent_Identity=30.7339449541284, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115533608, Length=196, Percent_Identity=29.5918367346939, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI62484234, Length=216, Percent_Identity=28.2407407407407, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24666092, Length=239, Percent_Identity=25.5230125523013, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571209, Length=268, Percent_Identity=25.7462686567164, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221500419, Length=220, Percent_Identity=28.6363636363636, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582014, Length=201, Percent_Identity=26.3681592039801, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582012, Length=201, Percent_Identity=26.3681592039801, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 33230; Mature: 33230

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIATTYPDAASGVAPDIELRDVRRKLGSTHALDGVTAHLPGGRVYGLIGRNGAGKTTLLR
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEECCCCCHHHHHH
TIAGQLRAKGEVLIGGQPVYDNTEVLNSLILSGPDVPWPADIKVKQLLSVVAARWETWDQ
HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
RYADQLCEDFEVDTRKPLSKLSRGQKSLVSIVIGLAAQCPVTLLDEPYLGLDVQNRELFY
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHH
KHLLQDVERNPRTFILSTHHVDDAARILDSVVLLDKGRITGVGTLDAITERIAILSGSAA
HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHH
AVEATLGELGVVDSVLSDATSSGLRRVVLDTHGAEANSVRDLAARIEGSGVRVTSADLEQ
HHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEHHHHHH
AVLALTGREF
HHHHHCCCCC
>Mature Secondary Structure
MIATTYPDAASGVAPDIELRDVRRKLGSTHALDGVTAHLPGGRVYGLIGRNGAGKTTLLR
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEECCCCCHHHHHH
TIAGQLRAKGEVLIGGQPVYDNTEVLNSLILSGPDVPWPADIKVKQLLSVVAARWETWDQ
HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
RYADQLCEDFEVDTRKPLSKLSRGQKSLVSIVIGLAAQCPVTLLDEPYLGLDVQNRELFY
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHH
KHLLQDVERNPRTFILSTHHVDDAARILDSVVLLDKGRITGVGTLDAITERIAILSGSAA
HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHH
AVEATLGELGVVDSVLSDATSSGLRRVVLDTHGAEANSVRDLAARIEGSGVRVTSADLEQ
HHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEHHHHHH
AVLALTGREF
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]