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The map label for this gene is ykgD [C]

Identifier: 77761178

GI number: 77761178

Start: 2343901

End: 2344368

Strand: Direct

Name: ykgD [C]

Synonym: XC_1940

Alternate gene names: 77761178

Gene position: 2343901-2344368 (Clockwise)

Preceding gene: 66768256

Following gene: 66768262

Centisome position: 45.52

GC content: 65.38

Gene sequence:

>468_bases
ATGGCACGTGGCATTGCCGTCGACTGCCGCACCGCGCCCCACGCATGCAGCGCACTTGAAGCACCGCGCATCCGTGCGGT
GGCAAGAGCCATGCAGTACATCGACACGCATCTGTGCGAACCGATCACGGTGACCCATCTGGCCACGGCCGCGTGCATGA
GCCGCTTCCATTTTGCGCGTGTGTTTCGCGATGTGGTCGGCGCCAGCCCGATGGAATATCTGCGCCGCCGCCGCATTGAG
CGTGCACAGGCCTTGCTGCGCGAAGGCCGCCACAAGATCAGCCAGATCGCCAGCGAGCTGTGCTTCTTCGACCAAAGCCA
TTTCGTCCGCAGTTTCCGCCATGCCACCGGCTGCACGCCGGCGCGCTTTGCCGCGCAGACCGTCTGCACTACCGCACACA
GCACGCCGGCCAGTGCGCCGCGGGCTGCCACGTCTTCCTTCTCACCACTCCTGGAGCACCACCGATGA

Upstream 100 bases:

>100_bases
GGCGGCCCCCCCGAAAGAGGGGGCGATTGACCTCACCATCTGGGGTGGGAGCGCGCACCTGCTCACCGCACCATGGCCGC
ACCCCCAACGGAGACGCCGC

Downstream 100 bases:

>100_bases
CCACCGCCACCGCCGTCCCCGGCAAGTCCCTGCTGTCGCCGAACGACCACGCCCTGATCCTGATCGACCACCAGTCGCAG
ATGGCGTTTGCCACCCACAC

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix Domain-Containing Protein; AraC-Family Transcriptional Regulator; AraC/XylS Family Transcriptional Regulator; AraC Family Transcription Regulator; Transcriptional Regulator Arac Family; Transcription Regulator; Transcriptional Regulator AraC-Type; Transcriptional Regulator With PAS/PAC Sensors AraC Family; AraC Type Helix-Turn-Helix- Domain-Containing Protein; Helix-Turn-Helix AraC Type; L-Rhamnose Operon Transcriptional Activator; PAS Sensor Protein; Two-Component Response Regulator; ThiJ/PfpI Domain-Containing Protein; AraC Family Regulatory Protein; Transcriptional Regulator AraC/XylS Family; Proline Utilization Regulator; Helix-Turn-Helix- Domain Containing Protein; Regulatory Protein; Transcriptional Activator RamA; AraC/XylS Family Transcription Factor; Xre Family xin-Antitoxin System Antitoxin Component; HTH-Type Transcriptional Regulator ChbR; Transcription Regulator Protein; AraC-Type Trancriptional Regulator; Transcriptional Regulator Protein AraC Family; Transcriptional Regulator Protein; AraC Family Regulatory Helix-Turn-Helix; AdaA Protein; AraC Family Transcription Regulator Protein; Two Component AraC Family Transcriptional Regulator; Xyls/AraC-Type Transcriptional Activator

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MARGIAVDCRTAPHACSALEAPRIRAVARAMQYIDTHLCEPITVTHLATAACMSRFHFARVFRDVVGASPMEYLRRRRIE
RAQALLREGRHKISQIASELCFFDQSHFVRSFRHATGCTPARFAAQTVCTTAHSTPASAPRAATSSFSPLLEHHR

Sequences:

>Translated_155_residues
MARGIAVDCRTAPHACSALEAPRIRAVARAMQYIDTHLCEPITVTHLATAACMSRFHFARVFRDVVGASPMEYLRRRRIE
RAQALLREGRHKISQIASELCFFDQSHFVRSFRHATGCTPARFAAQTVCTTAHSTPASAPRAATSSFSPLLEHHR
>Mature_154_residues
ARGIAVDCRTAPHACSALEAPRIRAVARAMQYIDTHLCEPITVTHLATAACMSRFHFARVFRDVVGASPMEYLRRRRIER
AQALLREGRHKISQIASELCFFDQSHFVRSFRHATGCTPARFAAQTVCTTAHSTPASAPRAATSSFSPLLEHHR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17259; Mature: 17128

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARGIAVDCRTAPHACSALEAPRIRAVARAMQYIDTHLCEPITVTHLATAACMSRFHFAR
CCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VFRDVVGASPMEYLRRRRIERAQALLREGRHKISQIASELCFFDQSHFVRSFRHATGCTP
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
ARFAAQTVCTTAHSTPASAPRAATSSFSPLLEHHR
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARGIAVDCRTAPHACSALEAPRIRAVARAMQYIDTHLCEPITVTHLATAACMSRFHFAR
CCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VFRDVVGASPMEYLRRRRIERAQALLREGRHKISQIASELCFFDQSHFVRSFRHATGCTP
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
ARFAAQTVCTTAHSTPASAPRAATSSFSPLLEHHR
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA