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The map label for this gene is cph2 [H]

Identifier: 77761150

GI number: 77761150

Start: 1670345

End: 1671829

Strand: Reverse

Name: cph2 [H]

Synonym: XC_1383

Alternate gene names: 77761150

Gene position: 1671829-1670345 (Counterclockwise)

Preceding gene: 66767717

Following gene: 66767704

Centisome position: 32.47

GC content: 65.79

Gene sequence:

>1485_bases
GTGGTGTCGACAAGCAAGCAGTGGCGGCAACGTGCACAGCGCATCGCGCTGCATTTCGTGTTGACCGCATCCTGGATACT
TCTGCTCGGTTCCGAATACTGGTCGATTCATGAGGAGCGCGACAGCGCCTTGCGGGCCGCGCAGACGCAGTCGTTGAACC
TGGCCGACTCGCTGGCGCAGCACGCCAGCGACACCATGACCATCGCCGATGCGGTGTTGTCGGGGCTGGTTGCACGCCTG
CAGCAGGACCGCGGCTCGGCAAACGAACATGCGGCGATGCATGCGTTTCTGGTCAGTGAGGCCCGCCGCTCGGAGCGCCT
GCATGGCATTTTCATCTACGCCGCCGATGGCCACTGGGTGAACTCGTCGCTGGGCAGCCTGCCGCGCACACACAACAATG
CCGACCGCGCGTATTTCAAGTACCACCGCGACCACCGCGACGCACTGGTGTTCGTCGGGCCACCGGTGCAGAGCCGCTCG
GACGGGCACTGGGTGATCACATTGAGCCGCCGCCTCACGACGCCGAGCGGCGAGTTCGATGGCGTGGCGCTGGTGACGCT
GCGGCTGAAGTATTTCCAGGACTACTACAGCCGCTTCCAGGTTGGGGATCACGGCACCATCGGCCTGTTCAACGATGATG
GCGTGGTGATCGTGCGGCGGCCGGAGCGCGACGACCAGACCGCCAGCTCGATCGCGGGCACGTCGCTGTACGTGACCATG
CGCAACGAGCGCCGCGGCACGCTCACCTACCGCTTGCCCCTGGATGGCGTGCAACGCATTTCCAGTTTTGTGCCGGCCCG
GCCCTACCCACTCACCGTGCTCACCGGCGTGGCAGTGGACGATGCGCTGGCCAATTGGCGCGCATCCGCACGCCAACGCA
TCATCATTGCCGTGCTCGGCTTCGTACTGCTGCTGGCCGTGGGCATCTGGCTGGACCTGCAGCTGCGCCGCATGCATCGC
AATGAAGCGCGGCTCAGCTCCGAGGTCTGGGTGGATGCCTTGACCGGTATCGCCAACCGGCGCGCCTTCGACCACCGCCT
GTCTGAGGCCTTGCAGGATGCCGTACACACGCAGGCGCCGCTGTCGGTGCTGATGATCGATGTCGACCACTTCAAGCTCT
ACAACGACACCTACGGACACGTCAACGGCGATGCCTGCCTGCGCCTGATCGCAGGCGCGATTGCCGGCTGTGCACGGCGC
AGCGACGACATCGCCGCGCGCTACGGCGGCGAGGAATTCGGCATGATCCTGCCGCACACCGACGTTGCCGGCGCGCTGCG
CCTGGCCGATGCCATTCGCACGGCGGTGGCGGAGCTGGGGTTGATGCATCTGACCAGCCCGACCAGTGCACATGTGACGG
TCAGCGTTGGCGCTGCCACCTTTGAGCCGGGCGAAACACCGCTGACACCCGATGCGATCGTGCGCGACGCGGACGGAGCG
TTGTATCGGGCCAAACAGGGCGGCCGGGATCGGACGTCTGCCTGA

Upstream 100 bases:

>100_bases
ATCCGGATTGCACGCGCGGCGCGCCTGGCTGGCATCGGGCGCCACCACGTACGCTGGCATGGCGGTTGCATCGGCTCTGC
GTCCTGGACAAGGAAACACA

Downstream 100 bases:

>100_bases
GCCGCCATGTTGTTTAGGTGGTCGTCGTTTGCGCTGCAGGTGGCGTGATGTTGGCCAGGGCTGTTTGAAATCGCCAGAGA
GATCGCTGTGACGGCCCTTC

Product: response regulator

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 494; Mature: 494

Protein sequence:

>494_residues
MVSTSKQWRQRAQRIALHFVLTASWILLLGSEYWSIHEERDSALRAAQTQSLNLADSLAQHASDTMTIADAVLSGLVARL
QQDRGSANEHAAMHAFLVSEARRSERLHGIFIYAADGHWVNSSLGSLPRTHNNADRAYFKYHRDHRDALVFVGPPVQSRS
DGHWVITLSRRLTTPSGEFDGVALVTLRLKYFQDYYSRFQVGDHGTIGLFNDDGVVIVRRPERDDQTASSIAGTSLYVTM
RNERRGTLTYRLPLDGVQRISSFVPARPYPLTVLTGVAVDDALANWRASARQRIIIAVLGFVLLLAVGIWLDLQLRRMHR
NEARLSSEVWVDALTGIANRRAFDHRLSEALQDAVHTQAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCARR
SDDIAARYGGEEFGMILPHTDVAGALRLADAIRTAVAELGLMHLTSPTSAHVTVSVGAATFEPGETPLTPDAIVRDADGA
LYRAKQGGRDRTSA

Sequences:

>Translated_494_residues
MVSTSKQWRQRAQRIALHFVLTASWILLLGSEYWSIHEERDSALRAAQTQSLNLADSLAQHASDTMTIADAVLSGLVARL
QQDRGSANEHAAMHAFLVSEARRSERLHGIFIYAADGHWVNSSLGSLPRTHNNADRAYFKYHRDHRDALVFVGPPVQSRS
DGHWVITLSRRLTTPSGEFDGVALVTLRLKYFQDYYSRFQVGDHGTIGLFNDDGVVIVRRPERDDQTASSIAGTSLYVTM
RNERRGTLTYRLPLDGVQRISSFVPARPYPLTVLTGVAVDDALANWRASARQRIIIAVLGFVLLLAVGIWLDLQLRRMHR
NEARLSSEVWVDALTGIANRRAFDHRLSEALQDAVHTQAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCARR
SDDIAARYGGEEFGMILPHTDVAGALRLADAIRTAVAELGLMHLTSPTSAHVTVSVGAATFEPGETPLTPDAIVRDADGA
LYRAKQGGRDRTSA
>Mature_494_residues
MVSTSKQWRQRAQRIALHFVLTASWILLLGSEYWSIHEERDSALRAAQTQSLNLADSLAQHASDTMTIADAVLSGLVARL
QQDRGSANEHAAMHAFLVSEARRSERLHGIFIYAADGHWVNSSLGSLPRTHNNADRAYFKYHRDHRDALVFVGPPVQSRS
DGHWVITLSRRLTTPSGEFDGVALVTLRLKYFQDYYSRFQVGDHGTIGLFNDDGVVIVRRPERDDQTASSIAGTSLYVTM
RNERRGTLTYRLPLDGVQRISSFVPARPYPLTVLTGVAVDDALANWRASARQRIIIAVLGFVLLLAVGIWLDLQLRRMHR
NEARLSSEVWVDALTGIANRRAFDHRLSEALQDAVHTQAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCARR
SDDIAARYGGEEFGMILPHTDVAGALRLADAIRTAVAELGLMHLTSPTSAHVTVSVGAATFEPGETPLTPDAIVRDADGA
LYRAKQGGRDRTSA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=40.3726708074534, Blast_Score=112, Evalue=8e-26,
Organism=Escherichia coli, GI87081881, Length=330, Percent_Identity=31.5151515151515, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI145693134, Length=168, Percent_Identity=39.2857142857143, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI87082007, Length=185, Percent_Identity=34.5945945945946, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=36.4197530864198, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI1788381, Length=179, Percent_Identity=35.7541899441341, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=33.1325301204819, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787541, Length=176, Percent_Identity=33.5227272727273, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787802, Length=165, Percent_Identity=35.1515151515151, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI87081974, Length=181, Percent_Identity=32.0441988950276, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788085, Length=172, Percent_Identity=32.5581395348837, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081977, Length=201, Percent_Identity=27.363184079602, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 54489; Mature: 54489

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSTSKQWRQRAQRIALHFVLTASWILLLGSEYWSIHEERDSALRAAQTQSLNLADSLAQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
HASDTMTIADAVLSGLVARLQQDRGSANEHAAMHAFLVSEARRSERLHGIFIYAADGHWV
HCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCCEE
NSSLGSLPRTHNNADRAYFKYHRDHRDALVFVGPPVQSRSDGHWVITLSRRLTTPSGEFD
CCHHHCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCC
GVALVTLRLKYFQDYYSRFQVGDHGTIGLFNDDGVVIVRRPERDDQTASSIAGTSLYVTM
CEEEEHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHCCCEEEEEE
RNERRGTLTYRLPLDGVQRISSFVPARPYPLTVLTGVAVDDALANWRASARQRIIIAVLG
ECCCCCEEEEEECHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
FVLLLAVGIWLDLQLRRMHRNEARLSSEVWVDALTGIANRRAFDHRLSEALQDAVHTQAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCARRSDDIAARYGGEEFGMILPHT
EEEEEEEEHHEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEECCC
DVAGALRLADAIRTAVAELGLMHLTSPTSAHVTVSVGAATFEPGETPLTPDAIVRDADGA
CHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEECCEEECCCCCCCCHHHHEECCCCC
LYRAKQGGRDRTSA
EEECCCCCCCCCCC
>Mature Secondary Structure
MVSTSKQWRQRAQRIALHFVLTASWILLLGSEYWSIHEERDSALRAAQTQSLNLADSLAQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
HASDTMTIADAVLSGLVARLQQDRGSANEHAAMHAFLVSEARRSERLHGIFIYAADGHWV
HCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCCEE
NSSLGSLPRTHNNADRAYFKYHRDHRDALVFVGPPVQSRSDGHWVITLSRRLTTPSGEFD
CCHHHCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCC
GVALVTLRLKYFQDYYSRFQVGDHGTIGLFNDDGVVIVRRPERDDQTASSIAGTSLYVTM
CEEEEHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHCCCEEEEEE
RNERRGTLTYRLPLDGVQRISSFVPARPYPLTVLTGVAVDDALANWRASARQRIIIAVLG
ECCCCCEEEEEECHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
FVLLLAVGIWLDLQLRRMHRNEARLSSEVWVDALTGIANRRAFDHRLSEALQDAVHTQAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCARRSDDIAARYGGEEFGMILPHT
EEEEEEEEHHEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEECCC
DVAGALRLADAIRTAVAELGLMHLTSPTSAHVTVSVGAATFEPGETPLTPDAIVRDADGA
CHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEECCEEECCCCCCCCHHHHEECCCCC
LYRAKQGGRDRTSA
EEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]