| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
Click here to switch to the map view.
The map label for this gene is pfeA [H]
Identifier: 77761133
GI number: 77761133
Start: 1344211
End: 1346610
Strand: Reverse
Name: pfeA [H]
Synonym: XC_1112
Alternate gene names: 77761133
Gene position: 1346610-1344211 (Counterclockwise)
Preceding gene: 77761134
Following gene: 66767438
Centisome position: 26.15
GC content: 65.38
Gene sequence:
>2400_bases ATGCACACGTCCACGTCTCTTTCGATTGCGGTTTCCATCGCGCTGGCCGCCAACGCGTTCGCCGGTACCGCGCAGGCACA GCAGCCGCCCCCACAGAAAACCCTCGACACCTTGATCGTTACCGGCACGCGCGTGGCCGACCGCACCGTGGCCGAATCCG AATCGCCGATCGACATCATCACCGAGCAGTCGTTGCAGGCGACCGGTGCGACCGATATCGCCACCGCGCTCGGCAAGCTG CTGCCGTCCCTGAACTTCCCGCGCCCGGCCATTTCCGACGGTAACGATGCCGCGCGCCCGGCCACGCTGCGCGGCCTGTC GCCGGATGCGGTGCTGGTGCTGGTGGATGGCAAGCGCTATCACACCTCTGCGCTGATCAACTACAACCCGTATGTGGGGC GCGGCTCGGCGCCGGCCGACCTCAACTCGCTGCCGATGTCGGCGGTGGCGCGCATCGAAGTGCTGCGTGATGGCGCCTCG GCGCAATACGGCTCCGATGCGATCGCCGGCGTGGTCAACATCGTGCTCAAGCACGGTGCCAAGACCGGCGACAACAGCGT GTCGGTCAACGGTGGTTTCATGGACAAGGGCGACGGCGAGCAGAACGGCATCGACGGCTCGGTCGGCATGGGCTTCGGCG GCACCGGCGGCGATACCACGCCGGGCTGGGTGCGGCTGTCGTGGAACTACCAGAACACCATGAGCACCAACCGCGGCGAA AACACCAACCGCGCCACCACCGTGCCCGGCACGCCCAATCCAGGTGGCGTGCCGTACCAGCGCCACGGCGACCCGAAGTC CACGTTCTACCAGGGCCTGGCCGCGTTCGGCTACGAGTTCTCGCCGAACCTGGAACTGTACGGCCACTTCAGTGCCAGCC GCCGCGAGGTGACTTCCAACGGCTATTACCGCGCCGCCGACAACCCCGCGCGCAATGTGCCCTCGATCTATCCGAACGGC TTCCTGCCGCAGATCTACAACCCGGTCAACGACCGCTCGGCAGTGCTCGGCATCAAGGGCAGCACCGAGAGCGAGTGGAA CTGGGATCTGTCGGCGTCGTACGGCAAGAACGACATGAGCTTCAACATCCTCAACAGCATCAACACCAACCTGTTCTACA CCACCGGTGCATCGCCCACCAACTTCAACTCCGGCGGCTTTGAAACCCAGCAGGGCACGGTGAATCTGGACATCAGCCGC GCCTTCGATTGGGGCCTGGCGTATCCGGTCAATGTCGCTTTCGGCGCCGAGCATCGCCAGGACCGCTACCGCATCACCGC CGGCTCGCCGGACTCGTATTTCTTCGATCCCAACACCATCAATCCGGCCGATGGCGCGCCGTATCCCGGTGGCGCACAGG TGTTCTCCGGGTTGGAGCCGTCGGTGGCAGGCAAGTTCGGCCGGCATAGCAACGCGGTCTACGCCAACCTGGAAGCCAAC CTCACCGAGAAGCTCTCCGGCGGTATCGCCGGGCGCTATGAAAACTACAGCGATGCCGGCGCCACGCGTTCGGGCAAGCT GTCGGCGCGTTATGCCTTCACCGACACCTTCTCGCTGCGCGGCACGATCTCCAACGGCTTCCGCGCGCCGTCGCTGGCCC AGCAGAACTACGCCTCGGTGGTGACGCTGATCCAGAACGGCGAGCTGGTGCAGGTGGGCACCTACCGCACCTCCGACCCG GTGGCACTGGCGCTGGGCGCACGCCCGCTGAGCCCGGAAAAATCCAGCAACTACGGCCTGGGCGGCGTCTGGCAGCCAAC TGCCAACTTCACCTCCAGCCTGGACGTGTACCAAATCCGCATCTGGGACCAGATCCTGTATTCGGACCAGTTGCAGTTGG CGCAGCCGATCGGCCAGGTGGCCGCGGTGCAGTTCTTCGTCAACGGCGCCACCAGCCGCACGCGCGGCGTGGACTGGGTC AACAGCTACATCGCCGATCTGGGCGAGCTGGGCCAGCTGACCCTGGGTGCCAGCGCCAACTACAACAAGACCACCATCCT GGAGTTGTCCAACCCCAACTTCGGCCGCGCCAGCCAGGGCCTGCTCACCGATGCCACGCCGCGCACCAAGTACATGGCCT CGGCGGATTGGGCGATCGGTGGATTCACGCTCAACGGCAACGCCACGCGTTACGGCTCGATCAAGCGCATCAGCGACCCG GTCGACGGCAGCCAGGACCAGACCTATGACGCACGCTGGATCCTGAACCTGTCCGCCAGCCAGACCTGGAACGCCTTCAC CTTCACCGTGGGCGCGGACAACCTCACCAACCAGTACCCGACCAAGGCGCAGCTGACCACCGCCTACGACGACCGTGCTG GCGGCCTGCAGTATTCCTCGCTGTCCCCGTTCGGCTTCAACGGCCGTTACTGGTATGGCCGGGTGACCTACCGGTTCTGA
Upstream 100 bases:
>100_bases AACTGCCCGCCGCTGTCGCGCTCCTGCATGCCGCATGGCCGTGCGTTTGCTGCTCCATCCCTTTCCCCCTGCTTCCCTTT CCTCCTGAGCGCCTCATCCC
Downstream 100 bases:
>100_bases TCCACTGCGGCGAGATCCGGGCCATCGCGGTATCCGCGATGGCCCGTTTTTTTTGCCCGCGGCACATCGCCCACCGGCGT CATCCCGGTGTTAGCGAACG
Product: ferric enterobactin receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 799; Mature: 799
Protein sequence:
>799_residues MHTSTSLSIAVSIALAANAFAGTAQAQQPPPQKTLDTLIVTGTRVADRTVAESESPIDIITEQSLQATGATDIATALGKL LPSLNFPRPAISDGNDAARPATLRGLSPDAVLVLVDGKRYHTSALINYNPYVGRGSAPADLNSLPMSAVARIEVLRDGAS AQYGSDAIAGVVNIVLKHGAKTGDNSVSVNGGFMDKGDGEQNGIDGSVGMGFGGTGGDTTPGWVRLSWNYQNTMSTNRGE NTNRATTVPGTPNPGGVPYQRHGDPKSTFYQGLAAFGYEFSPNLELYGHFSASRREVTSNGYYRAADNPARNVPSIYPNG FLPQIYNPVNDRSAVLGIKGSTESEWNWDLSASYGKNDMSFNILNSINTNLFYTTGASPTNFNSGGFETQQGTVNLDISR AFDWGLAYPVNVAFGAEHRQDRYRITAGSPDSYFFDPNTINPADGAPYPGGAQVFSGLEPSVAGKFGRHSNAVYANLEAN LTEKLSGGIAGRYENYSDAGATRSGKLSARYAFTDTFSLRGTISNGFRAPSLAQQNYASVVTLIQNGELVQVGTYRTSDP VALALGARPLSPEKSSNYGLGGVWQPTANFTSSLDVYQIRIWDQILYSDQLQLAQPIGQVAAVQFFVNGATSRTRGVDWV NSYIADLGELGQLTLGASANYNKTTILELSNPNFGRASQGLLTDATPRTKYMASADWAIGGFTLNGNATRYGSIKRISDP VDGSQDQTYDARWILNLSASQTWNAFTFTVGADNLTNQYPTKAQLTTAYDDRAGGLQYSSLSPFGFNGRYWYGRVTYRF
Sequences:
>Translated_799_residues MHTSTSLSIAVSIALAANAFAGTAQAQQPPPQKTLDTLIVTGTRVADRTVAESESPIDIITEQSLQATGATDIATALGKL LPSLNFPRPAISDGNDAARPATLRGLSPDAVLVLVDGKRYHTSALINYNPYVGRGSAPADLNSLPMSAVARIEVLRDGAS AQYGSDAIAGVVNIVLKHGAKTGDNSVSVNGGFMDKGDGEQNGIDGSVGMGFGGTGGDTTPGWVRLSWNYQNTMSTNRGE NTNRATTVPGTPNPGGVPYQRHGDPKSTFYQGLAAFGYEFSPNLELYGHFSASRREVTSNGYYRAADNPARNVPSIYPNG FLPQIYNPVNDRSAVLGIKGSTESEWNWDLSASYGKNDMSFNILNSINTNLFYTTGASPTNFNSGGFETQQGTVNLDISR AFDWGLAYPVNVAFGAEHRQDRYRITAGSPDSYFFDPNTINPADGAPYPGGAQVFSGLEPSVAGKFGRHSNAVYANLEAN LTEKLSGGIAGRYENYSDAGATRSGKLSARYAFTDTFSLRGTISNGFRAPSLAQQNYASVVTLIQNGELVQVGTYRTSDP VALALGARPLSPEKSSNYGLGGVWQPTANFTSSLDVYQIRIWDQILYSDQLQLAQPIGQVAAVQFFVNGATSRTRGVDWV NSYIADLGELGQLTLGASANYNKTTILELSNPNFGRASQGLLTDATPRTKYMASADWAIGGFTLNGNATRYGSIKRISDP VDGSQDQTYDARWILNLSASQTWNAFTFTVGADNLTNQYPTKAQLTTAYDDRAGGLQYSSLSPFGFNGRYWYGRVTYRF >Mature_799_residues MHTSTSLSIAVSIALAANAFAGTAQAQQPPPQKTLDTLIVTGTRVADRTVAESESPIDIITEQSLQATGATDIATALGKL LPSLNFPRPAISDGNDAARPATLRGLSPDAVLVLVDGKRYHTSALINYNPYVGRGSAPADLNSLPMSAVARIEVLRDGAS AQYGSDAIAGVVNIVLKHGAKTGDNSVSVNGGFMDKGDGEQNGIDGSVGMGFGGTGGDTTPGWVRLSWNYQNTMSTNRGE NTNRATTVPGTPNPGGVPYQRHGDPKSTFYQGLAAFGYEFSPNLELYGHFSASRREVTSNGYYRAADNPARNVPSIYPNG FLPQIYNPVNDRSAVLGIKGSTESEWNWDLSASYGKNDMSFNILNSINTNLFYTTGASPTNFNSGGFETQQGTVNLDISR AFDWGLAYPVNVAFGAEHRQDRYRITAGSPDSYFFDPNTINPADGAPYPGGAQVFSGLEPSVAGKFGRHSNAVYANLEAN LTEKLSGGIAGRYENYSDAGATRSGKLSARYAFTDTFSLRGTISNGFRAPSLAQQNYASVVTLIQNGELVQVGTYRTSDP VALALGARPLSPEKSSNYGLGGVWQPTANFTSSLDVYQIRIWDQILYSDQLQLAQPIGQVAAVQFFVNGATSRTRGVDWV NSYIADLGELGQLTLGASANYNKTTILELSNPNFGRASQGLLTDATPRTKYMASADWAIGGFTLNGNATRYGSIKRISDP VDGSQDQTYDARWILNLSASQTWNAFTFTVGADNLTNQYPTKAQLTTAYDDRAGGLQYSSLSPFGFNGRYWYGRVTYRF
Specific function: Specific receptor for the siderophore ferric enterobactin [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=187, Percent_Identity=30.4812834224599, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1790405, Length=164, Percent_Identity=31.7073170731707, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1786798, Length=173, Percent_Identity=30.0578034682081, Blast_Score=70, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 85526; Mature: 85526
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHTSTSLSIAVSIALAANAFAGTAQAQQPPPQKTLDTLIVTGTRVADRTVAESESPIDII CCCCCCEEEEEEEEEHHCHHCCCCCCCCCCCHHHHHEEEEECCCHHHHHHHCCCCCEEEE TEQSLQATGATDIATALGKLLPSLNFPRPAISDGNDAARPATLRGLSPDAVLVLVDGKRY ECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCEE HTSALINYNPYVGRGSAPADLNSLPMSAVARIEVLRDGASAQYGSDAIAGVVNIVLKHGA EEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC KTGDNSVSVNGGFMDKGDGEQNGIDGSVGMGFGGTGGDTTPGWVRLSWNYQNTMSTNRGE CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHCCCCCCCC NTNRATTVPGTPNPGGVPYQRHGDPKSTFYQGLAAFGYEFSPNLELYGHFSASRREVTSN CCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEECCCCEEEEECCCCCHHHCCC GYYRAADNPARNVPSIYPNGFLPQIYNPVNDRSAVLGIKGSTESEWNWDLSASYGKNDMS CEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCCE FNILNSINTNLFYTTGASPTNFNSGGFETQQGTVNLDISRAFDWGLAYPVNVAFGAEHRQ EEECCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCC DRYRITAGSPDSYFFDPNTINPADGAPYPGGAQVFSGLEPSVAGKFGRHSNAVYANLEAN CCEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHCCCCHHHHHCCCCCCCCEEEEECCC LTEKLSGGIAGRYENYSDAGATRSGKLSARYAFTDTFSLRGTISNGFRAPSLAQQNYASV HHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCHHHHHHEEE VTLIQNGELVQVGTYRTSDPVALALGARPLSPEKSSNYGLGGVWQPTANFTSSLDVYQIR EEEEECCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEE IWDQILYSDQLQLAQPIGQVAAVQFFVNGATSRTRGVDWVNSYIADLGELGQLTLGASAN EEHHHHHCCHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCC YNKTTILELSNPNFGRASQGLLTDATPRTKYMASADWAIGGFTLNGNATRYGSIKRISDP CCCEEEEEECCCCCCCCCCCCEECCCCCCEEEECCCCEEEEEEECCCCEECCCHHCCCCC VDGSQDQTYDARWILNLSASQTWNAFTFTVGADNLTNQYPTKAQLTTAYDDRAGGLQYSS CCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEECC LSPFGFNGRYWYGRVTYRF CCCCCCCCEEEEEEEEEEC >Mature Secondary Structure MHTSTSLSIAVSIALAANAFAGTAQAQQPPPQKTLDTLIVTGTRVADRTVAESESPIDII CCCCCCEEEEEEEEEHHCHHCCCCCCCCCCCHHHHHEEEEECCCHHHHHHHCCCCCEEEE TEQSLQATGATDIATALGKLLPSLNFPRPAISDGNDAARPATLRGLSPDAVLVLVDGKRY ECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCEE HTSALINYNPYVGRGSAPADLNSLPMSAVARIEVLRDGASAQYGSDAIAGVVNIVLKHGA EEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC KTGDNSVSVNGGFMDKGDGEQNGIDGSVGMGFGGTGGDTTPGWVRLSWNYQNTMSTNRGE CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHCCCCCCCC NTNRATTVPGTPNPGGVPYQRHGDPKSTFYQGLAAFGYEFSPNLELYGHFSASRREVTSN CCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEECCCCEEEEECCCCCHHHCCC GYYRAADNPARNVPSIYPNGFLPQIYNPVNDRSAVLGIKGSTESEWNWDLSASYGKNDMS CEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCCE FNILNSINTNLFYTTGASPTNFNSGGFETQQGTVNLDISRAFDWGLAYPVNVAFGAEHRQ EEECCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCC DRYRITAGSPDSYFFDPNTINPADGAPYPGGAQVFSGLEPSVAGKFGRHSNAVYANLEAN CCEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHCCCCHHHHHCCCCCCCCEEEEECCC LTEKLSGGIAGRYENYSDAGATRSGKLSARYAFTDTFSLRGTISNGFRAPSLAQQNYASV HHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCHHHHHHEEE VTLIQNGELVQVGTYRTSDPVALALGARPLSPEKSSNYGLGGVWQPTANFTSSLDVYQIR EEEEECCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEE IWDQILYSDQLQLAQPIGQVAAVQFFVNGATSRTRGVDWVNSYIADLGELGQLTLGASAN EEHHHHHCCHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCC YNKTTILELSNPNFGRASQGLLTDATPRTKYMASADWAIGGFTLNGNATRYGSIKRISDP CCCEEEEEECCCCCCCCCCCCEECCCCCCEEEECCCCEEEEEEECCCCEECCCHHCCCCC VDGSQDQTYDARWILNLSASQTWNAFTFTVGADNLTNQYPTKAQLTTAYDDRAGGLQYSS CCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEECC LSPFGFNGRYWYGRVTYRF CCCCCCCCEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8419284; 10984043 [H]