| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is garD [H]
Identifier: 77761121
GI number: 77761121
Start: 1139341
End: 1140882
Strand: Reverse
Name: garD [H]
Synonym: XC_0949
Alternate gene names: 77761121
Gene position: 1140882-1139341 (Counterclockwise)
Preceding gene: 66767282
Following gene: 66767280
Centisome position: 22.16
GC content: 66.73
Gene sequence:
>1542_bases ATGTCCGCCACCCAGCAACTGCCGCGCTGGCTCAGTCTGCAAGCGCATCCTCAGGACAACGTCGCCATCGTCGTCAACGA TGGCGGTGCGCCGCCGGGCGCCACGTTCCAGGACGGGATGACCGCGATCGAGCACATTCCGCAAGGTCACAAGATTGCAT TGCAGGCGCTGCACAAGGGCACGGCAGTGCGCCGCCTGGGCGCGGTCATCGGCACCGCGGCCGACGACATCGCACGCGGC GCCTGGGTCAGCGAGCAGTTGCTGGAGATGCCCACCGCACCGGAACTGGCAGCACTGGATCTGACGCCGCAGCCACCGGC TGCCGCCGCGCCACTGGACGGGTATACGTTCCAGGGCTATCGCAATCGCGACGGCAGCGTCGGCACCCGCAACATTCTCG GCATCATGACCAGCGTGCAGTGCGTGGTGGGTGTGCTGGGCCATGCGGTTGCCCGGATCCGCGCCGAACTGCTGCCCAAG TACCCCAATGTCGATGACGTGGTGGCGATCAATCATGTCTACGGCTGCGGCGTGGCCATCACCGCGCCCGAGGCCATCAT TCCCATCCGCACGCTGCGCAATATCGCGCGCAGCCCCAACTTCGGCGGGCAGGCATTGATCGTGGGCCTGGGCTGCGAAA AACTCGCGCCCGAGCGCCTGCTGCCGGACGATGCCAGCGCCGACGATAGCGGCATTTATCGGCTGCAGGAGGCTAGCCTG GGCTTCGCCGACATGGTTGGCTCAATCATGCAGATGGCCGAAGAACGGCTGCGCCACCTCGACACCCGCCGCCGCGAAAC CGTGCCCGCCAGCGAGCTGGTGGTGGGCATGCAATGTGGTGGCAGCGATGCGTTTTCAGGCGTCACTGCCAACCCGGGCC TGGGCATCGCGGCCGACCTGCTGGTGCGTGCTGGCGCGACCGTGATGTTTTCGGAAAACACCGAAGTGCGCGATGGCATT CACCTGCTGGTGCCACGCGCCGCCAATGCCGAGGTCGCCAAGGCGCTGGTGCGCGAGATGGCCTGGTATGACGCCTACCT GGCGCGCGGCCAGGCCGATCGCAGCGCCAACACCACCCCGGGCAACAAGAAGGGCGGGCTGGCCAATATCGTGGAAAAGG CGATGGGCTCGATCGCCAAGTCCGGCTCGTCACCCATCAACGGCGTGGTGCCGCCGGGTGAGCGGGTCAAGGGGCGCGGC TTGCAGTACTGCGCCACGCCGGCCAGCGATTTTGTCTGCGGCACCTTGCAGGTGGCCGCCGGCATGAACCTGCACGTCTT CACCACCGGGCGTGGCACGCCGTACGGGCTGGGCATGGTGCCGGTGATCAAGGTGGCCACGCGCACCGAGCTGGCGCAGC GCTGGTCCGATCTGATGGATATCGATGCCGGTGGGGTGGCGAGCGGGGCCAAGACGCTGGACCAACTCGGCTGGGAACTG TTCCAGCGTTATCTCGATGTAGCCAGCGGGCAGCGCACCTGGACCGAGCAACACCGCCTGTACAACGACCTGGCGTTGTT CAATCCGGCGCCGATCACCTGA
Upstream 100 bases:
>100_bases CGCAACGTCGACGAGAATCGATTGATTCTGCAATACAAGCGCCAGTTCGATACGCCTGGCCAGTGATGTTCCTCTCCCCT GTTTGCAAGGTAAGCCCATG
Downstream 100 bases:
>100_bases GCGCCGGCTGCCGAGGATGGCTGATGGCCGCCGAGCACTGCCGCGTAGGGCGCGTCGGCGGCGGCCACGCTGTCATTGGC CCGTGCGTGGCGTGCGCCGA
Product: D-galactarate dehydratase
Products: NA
Alternate protein names: GalcD [H]
Number of amino acids: Translated: 513; Mature: 512
Protein sequence:
>513_residues MSATQQLPRWLSLQAHPQDNVAIVVNDGGAPPGATFQDGMTAIEHIPQGHKIALQALHKGTAVRRLGAVIGTAADDIARG AWVSEQLLEMPTAPELAALDLTPQPPAAAAPLDGYTFQGYRNRDGSVGTRNILGIMTSVQCVVGVLGHAVARIRAELLPK YPNVDDVVAINHVYGCGVAITAPEAIIPIRTLRNIARSPNFGGQALIVGLGCEKLAPERLLPDDASADDSGIYRLQEASL GFADMVGSIMQMAEERLRHLDTRRRETVPASELVVGMQCGGSDAFSGVTANPGLGIAADLLVRAGATVMFSENTEVRDGI HLLVPRAANAEVAKALVREMAWYDAYLARGQADRSANTTPGNKKGGLANIVEKAMGSIAKSGSSPINGVVPPGERVKGRG LQYCATPASDFVCGTLQVAAGMNLHVFTTGRGTPYGLGMVPVIKVATRTELAQRWSDLMDIDAGGVASGAKTLDQLGWEL FQRYLDVASGQRTWTEQHRLYNDLALFNPAPIT
Sequences:
>Translated_513_residues MSATQQLPRWLSLQAHPQDNVAIVVNDGGAPPGATFQDGMTAIEHIPQGHKIALQALHKGTAVRRLGAVIGTAADDIARG AWVSEQLLEMPTAPELAALDLTPQPPAAAAPLDGYTFQGYRNRDGSVGTRNILGIMTSVQCVVGVLGHAVARIRAELLPK YPNVDDVVAINHVYGCGVAITAPEAIIPIRTLRNIARSPNFGGQALIVGLGCEKLAPERLLPDDASADDSGIYRLQEASL GFADMVGSIMQMAEERLRHLDTRRRETVPASELVVGMQCGGSDAFSGVTANPGLGIAADLLVRAGATVMFSENTEVRDGI HLLVPRAANAEVAKALVREMAWYDAYLARGQADRSANTTPGNKKGGLANIVEKAMGSIAKSGSSPINGVVPPGERVKGRG LQYCATPASDFVCGTLQVAAGMNLHVFTTGRGTPYGLGMVPVIKVATRTELAQRWSDLMDIDAGGVASGAKTLDQLGWEL FQRYLDVASGQRTWTEQHRLYNDLALFNPAPIT >Mature_512_residues SATQQLPRWLSLQAHPQDNVAIVVNDGGAPPGATFQDGMTAIEHIPQGHKIALQALHKGTAVRRLGAVIGTAADDIARGA WVSEQLLEMPTAPELAALDLTPQPPAAAAPLDGYTFQGYRNRDGSVGTRNILGIMTSVQCVVGVLGHAVARIRAELLPKY PNVDDVVAINHVYGCGVAITAPEAIIPIRTLRNIARSPNFGGQALIVGLGCEKLAPERLLPDDASADDSGIYRLQEASLG FADMVGSIMQMAEERLRHLDTRRRETVPASELVVGMQCGGSDAFSGVTANPGLGIAADLLVRAGATVMFSENTEVRDGIH LLVPRAANAEVAKALVREMAWYDAYLARGQADRSANTTPGNKKGGLANIVEKAMGSIAKSGSSPINGVVPPGERVKGRGL QYCATPASDFVCGTLQVAAGMNLHVFTTGRGTPYGLGMVPVIKVATRTELAQRWSDLMDIDAGGVASGAKTLDQLGWELF QRYLDVASGQRTWTEQHRLYNDLALFNPAPIT
Specific function: D-galactarate metabolism; first step. [C]
COG id: COG2721
COG function: function code G; Altronate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the uxaA family [H]
Homologues:
Organism=Escherichia coli, GI1789516, Length=516, Percent_Identity=60.8527131782946, Blast_Score=635, Evalue=0.0, Organism=Escherichia coli, GI1789475, Length=508, Percent_Identity=32.4803149606299, Blast_Score=213, Evalue=2e-56,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007392 - InterPro: IPR017654 - InterPro: IPR013974 [H]
Pfam domain/function: PF04295 GD_AH_C; PF08666 SAF [H]
EC number: =4.2.1.42 [H]
Molecular weight: Translated: 54288; Mature: 54156
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATQQLPRWLSLQAHPQDNVAIVVNDGGAPPGATFQDGMTAIEHIPQGHKIALQALHKG CCCHHHCHHHHCEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH TAVRRLGAVIGTAADDIARGAWVSEQLLEMPTAPELAALDLTPQPPAAAAPLDGYTFQGY HHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCEECCC RNRDGSVGTRNILGIMTSVQCVVGVLGHAVARIRAELLPKYPNVDDVVAINHVYGCGVAI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHCCCEEE TAPEAIIPIRTLRNIARSPNFGGQALIVGLGCEKLAPERLLPDDASADDSGIYRLQEASL ECCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHCCCCCCCCCCCCCCCCCCEEEHHHCC GFADMVGSIMQMAEERLRHLDTRRRETVPASELVVGMQCGGSDAFSGVTANPGLGIAADL CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCCCCCCCHHHHH LVRAGATVMFSENTEVRDGIHLLVPRAANAEVAKALVREMAWYDAYLARGQADRSANTTP HHHCCCEEEEECCCCHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC GNKKGGLANIVEKAMGSIAKSGSSPINGVVPPGERVKGRGLQYCATPASDFVCGTLQVAA CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHC GMNLHVFTTGRGTPYGLGMVPVIKVATRTELAQRWSDLMDIDAGGVASGAKTLDQLGWEL CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH FQRYLDVASGQRTWTEQHRLYNDLALFNPAPIT HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SATQQLPRWLSLQAHPQDNVAIVVNDGGAPPGATFQDGMTAIEHIPQGHKIALQALHKG CCHHHCHHHHCEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH TAVRRLGAVIGTAADDIARGAWVSEQLLEMPTAPELAALDLTPQPPAAAAPLDGYTFQGY HHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCEECCC RNRDGSVGTRNILGIMTSVQCVVGVLGHAVARIRAELLPKYPNVDDVVAINHVYGCGVAI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHCCCEEE TAPEAIIPIRTLRNIARSPNFGGQALIVGLGCEKLAPERLLPDDASADDSGIYRLQEASL ECCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHCCCCCCCCCCCCCCCCCCEEEHHHCC GFADMVGSIMQMAEERLRHLDTRRRETVPASELVVGMQCGGSDAFSGVTANPGLGIAADL CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCCCCCCCHHHHH LVRAGATVMFSENTEVRDGIHLLVPRAANAEVAKALVREMAWYDAYLARGQADRSANTTP HHHCCCEEEEECCCCHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC GNKKGGLANIVEKAMGSIAKSGSSPINGVVPPGERVKGRGLQYCATPASDFVCGTLQVAA CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHC GMNLHVFTTGRGTPYGLGMVPVIKVATRTELAQRWSDLMDIDAGGVASGAKTLDQLGWEL CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH FQRYLDVASGQRTWTEQHRLYNDLALFNPAPIT HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7704254; 9384377 [H]