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The map label for this gene is oprD [H]

Identifier: 66767282

GI number: 66767282

Start: 1140917

End: 1142188

Strand: Reverse

Name: oprD [H]

Synonym: XC_0950

Alternate gene names: 66767282

Gene position: 1142188-1140917 (Counterclockwise)

Preceding gene: 66767283

Following gene: 77761121

Centisome position: 22.18

GC content: 63.44

Gene sequence:

>1272_bases
ATGAAACACGTACTGGCACTCGGCAGCGCCGCGCTGCTGGCGGTTGGTGCCGCCGGGCGCGCACGCGCACAGGCGCCGGA
CGATGGGTTCTGGGATGGCGCGGGCGTGGACGTCACTGCGCTCAACTTCTATTACAACCGTGACTTCCGCAGTGGCGAAG
GGCAGGGCAAGCGTGCCGAATGGGCCCAGGGCTTCGTGGTGGATGCCAAAAGCGGCTATACCCGCGGTCCCGTCGGTGCC
GGCCTGGATCTGCTCGGCATCGGCGACTTCAAGCTCGATGGCGTGCGCGCCGAGGGCGGCACCGGCTTGCTGCCCAATAA
CGACGATGGCACTGCGCAACACGCGCTGATGCGGGTGGCGCCCACACTCAAGCTGCGCGCCTCGCAAACCGAATTGAAGT
GGGGCAGCTTCATTCCCAACGAGCCGCTGGTACGCGCCAGCATCACCCGCATCATGCCGGAGACGTTTCAAGGCGTGACG
CTGGAATCCAAGGACGTGCCCAAGCTCGATCTGCTGCTCGCGCGTTTCACCAGTGCCTGGTATCGCGACGGCGATTCGCG
CGTGCCGATCACCTTGACCAACAAGAACCGCCGCTTTCTGGGGACCCCGGATGCGGATGCGTTGAATCTGGTGTCGGCCA
CCTACAGCGTTGCGCCCGGCACGCAGCTACGCTATCAGGGCGCGCTGATGGAAGACATCTACCGCCAGCAGCTCTACAAC
CTGATCCAGACGCACGCCTTCGGCAAGGATCAGTTGCGTGTAGACCTGCGCTATTTCCGCACCGATGACGTCGGCCAATC
GCGTGCCGGGCCAATCGACAACCGTATGTTCAGCAGCATGGTGTCCTGGCGCACTGGCGGGCATGAATTCGGGGCCGGCT
ATCAACGCCTGTCCGGGCCCGGCGCCATGCCCTGGCCAGGCGGTACCGACGGCAATGTCTTCAACTGGACCTTCATCAAC
GACTTTCTCGAACGCGGCGAGCGCAGCTGGCAGCTGCGTTACAGCATCGATGGCAAGAGCATCGGCATCCCCGGGCTCAG
CGTCATGGCGCGCTACATCCACGGCGATGACGCGCGGCCTGCGACCTATGCAGGCGAAGGCCGCGAGTGGGCGCGTGACG
TGCTCACTACCTACCGGTTTCAGAGCCCGCGTCTCAAGCATTTCAGCGTGATCTGGTTCAACGGCACGTTTCGCTCCAAC
TACCAGCGCAACGTCGACGAGAATCGATTGATTCTGCAATACAAGCGCCAGTTCGATACGCCTGGCCAGTGA

Upstream 100 bases:

>100_bases
AGCGTCCGTGCCTGGTGCGCTAGCTGTGGCGTCGCAGGCCAACACGGGTGCATTGCGCCAGGTTGCATGCACCGCTTCAC
CACCGCGGAGGGCGGTTGAC

Downstream 100 bases:

>100_bases
TGTTCCTCTCCCCTGTTTGCAAGGTAAGCCCATGATGTCCGCCACCCAGCAACTGCCGCGCTGGCTCAGTCTGCAAGCGC
ATCCTCAGGACAACGTCGCC

Product: porin

Products: NA

Alternate protein names: Imipenem/basic amino acid-specific outer membrane pore; Outer membrane protein D2 [H]

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MKHVLALGSAALLAVGAAGRARAQAPDDGFWDGAGVDVTALNFYYNRDFRSGEGQGKRAEWAQGFVVDAKSGYTRGPVGA
GLDLLGIGDFKLDGVRAEGGTGLLPNNDDGTAQHALMRVAPTLKLRASQTELKWGSFIPNEPLVRASITRIMPETFQGVT
LESKDVPKLDLLLARFTSAWYRDGDSRVPITLTNKNRRFLGTPDADALNLVSATYSVAPGTQLRYQGALMEDIYRQQLYN
LIQTHAFGKDQLRVDLRYFRTDDVGQSRAGPIDNRMFSSMVSWRTGGHEFGAGYQRLSGPGAMPWPGGTDGNVFNWTFIN
DFLERGERSWQLRYSIDGKSIGIPGLSVMARYIHGDDARPATYAGEGREWARDVLTTYRFQSPRLKHFSVIWFNGTFRSN
YQRNVDENRLILQYKRQFDTPGQ

Sequences:

>Translated_423_residues
MKHVLALGSAALLAVGAAGRARAQAPDDGFWDGAGVDVTALNFYYNRDFRSGEGQGKRAEWAQGFVVDAKSGYTRGPVGA
GLDLLGIGDFKLDGVRAEGGTGLLPNNDDGTAQHALMRVAPTLKLRASQTELKWGSFIPNEPLVRASITRIMPETFQGVT
LESKDVPKLDLLLARFTSAWYRDGDSRVPITLTNKNRRFLGTPDADALNLVSATYSVAPGTQLRYQGALMEDIYRQQLYN
LIQTHAFGKDQLRVDLRYFRTDDVGQSRAGPIDNRMFSSMVSWRTGGHEFGAGYQRLSGPGAMPWPGGTDGNVFNWTFIN
DFLERGERSWQLRYSIDGKSIGIPGLSVMARYIHGDDARPATYAGEGREWARDVLTTYRFQSPRLKHFSVIWFNGTFRSN
YQRNVDENRLILQYKRQFDTPGQ
>Mature_423_residues
MKHVLALGSAALLAVGAAGRARAQAPDDGFWDGAGVDVTALNFYYNRDFRSGEGQGKRAEWAQGFVVDAKSGYTRGPVGA
GLDLLGIGDFKLDGVRAEGGTGLLPNNDDGTAQHALMRVAPTLKLRASQTELKWGSFIPNEPLVRASITRIMPETFQGVT
LESKDVPKLDLLLARFTSAWYRDGDSRVPITLTNKNRRFLGTPDADALNLVSATYSVAPGTQLRYQGALMEDIYRQQLYN
LIQTHAFGKDQLRVDLRYFRTDDVGQSRAGPIDNRMFSSMVSWRTGGHEFGAGYQRLSGPGAMPWPGGTDGNVFNWTFIN
DFLERGERSWQLRYSIDGKSIGIPGLSVMARYIHGDDARPATYAGEGREWARDVLTTYRFQSPRLKHFSVIWFNGTFRSN
YQRNVDENRLILQYKRQFDTPGQ

Specific function: Porin with a specificity for basic amino acids. Also possesses serine protease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 47068; Mature: 47068

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS00697 DNA_LIGASE_A1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHVLALGSAALLAVGAAGRARAQAPDDGFWDGAGVDVTALNFYYNRDFRSGEGQGKRAE
CCCEEHHCCHHHHEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCH
WAQGFVVDAKSGYTRGPVGAGLDLLGIGDFKLDGVRAEGGTGLLPNNDDGTAQHALMRVA
HHCCEEEECCCCCCCCCCCCCEEEEEECCEEECCEEECCCCCCCCCCCCCHHHHHHHHHC
PTLKLRASQTELKWGSFIPNEPLVRASITRIMPETFQGVTLESKDVPKLDLLLARFTSAW
CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHH
YRDGDSRVPITLTNKNRRFLGTPDADALNLVSATYSVAPGTQLRYQGALMEDIYRQQLYN
HCCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHEECCCCCCEEECCHHHHHHHHHHHHH
LIQTHAFGKDQLRVDLRYFRTDDVGQSRAGPIDNRMFSSMVSWRTGGHEFGAGYQRLSGP
HHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCHHCCCHHHHCCC
GAMPWPGGTDGNVFNWTFINDFLERGERSWQLRYSIDGKSIGIPGLSVMARYIHGDDARP
CCCCCCCCCCCCEEEEHHHHHHHHCCCCCEEEEEEECCCEECCCHHHHHHHHHCCCCCCC
ATYAGEGREWARDVLTTYRFQSPRLKHFSVIWFNGTFRSNYQRNVDENRLILQYKRQFDT
CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEHHCCCC
PGQ
CCC
>Mature Secondary Structure
MKHVLALGSAALLAVGAAGRARAQAPDDGFWDGAGVDVTALNFYYNRDFRSGEGQGKRAE
CCCEEHHCCHHHHEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCH
WAQGFVVDAKSGYTRGPVGAGLDLLGIGDFKLDGVRAEGGTGLLPNNDDGTAQHALMRVA
HHCCEEEECCCCCCCCCCCCCEEEEEECCEEECCEEECCCCCCCCCCCCCHHHHHHHHHC
PTLKLRASQTELKWGSFIPNEPLVRASITRIMPETFQGVTLESKDVPKLDLLLARFTSAW
CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHH
YRDGDSRVPITLTNKNRRFLGTPDADALNLVSATYSVAPGTQLRYQGALMEDIYRQQLYN
HCCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHEECCCCCCEEECCHHHHHHHHHHHHH
LIQTHAFGKDQLRVDLRYFRTDDVGQSRAGPIDNRMFSSMVSWRTGGHEFGAGYQRLSGP
HHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCHHCCCHHHHCCC
GAMPWPGGTDGNVFNWTFINDFLERGERSWQLRYSIDGKSIGIPGLSVMARYIHGDDARP
CCCCCCCCCCCCEEEEHHHHHHHHCCCCCEEEEEEECCCEECCCHHHHHHHHHCCCCCCC
ATYAGEGREWARDVLTTYRFQSPRLKHFSVIWFNGTFRSNYQRNVDENRLILQYKRQFDT
CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEHHCCCC
PGQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1339257; 1427017; 10984043; 8012497; 2118530; 8843159; 9636669 [H]