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The map label for this gene is cydA [H]

Identifier: 66768206

GI number: 66768206

Start: 2279904

End: 2281496

Strand: Reverse

Name: cydA [H]

Synonym: XC_1885

Alternate gene names: 66768206

Gene position: 2281496-2279904 (Counterclockwise)

Preceding gene: 66768209

Following gene: 66768205

Centisome position: 44.31

GC content: 63.09

Gene sequence:

>1593_bases
ATGATCGACTCGACAGTCGTTGAACTGTCGCGGCTGCAGTTCGCACTGACCGCGATGTACCACTTTCTCTTCGTCCCGCT
GACCCTGGGGCTCTCTTTCATGATTGCGATCATGGAGAGCGTCTATGTGATGACCGGCAAGGACGTCTGGCGCCGCATGA
CGCTGTTCTGGGGCGTGCTGTTCGGCATCAATTTCGCCATGGGTGTCGGCACCGGCATCGTGATGGAGTTCCAGTTCGGC
ATGAACTGGTCGTACTACAGCCACTATGTCGGCGACATCTTCGGCGCGCCGCTGGCGATCGAAGGCCTGATGGCGTTCTT
CCTGGAAGCGACCTTCATCGGCCTGTTCTTTTTCGGCTGGAGCCGGCTCTCGCGCGTGCAGCACCTCACGGTGACCTGGC
TGATGGCGCTGGGCACCAACCTGTCGGCGCTGTGGATCCTGATCGCCAACGGCTGGATGCAGAACCCCACCGGTGCGGTG
TTCAACCCGGACACCATGCGCATGGAAGTGGTGGACTTCATGGCGGTGCTGTTCAACCCGGTGGCGCAGGCCAAGTTCGT
GCACACGGTGAGCGCGGGCTACGTTACCGGCGCAATGTTCGTGATGTCGATCAGTGCGTTGTTCCTGCTGCGCGGCACGC
ACCGAGAGCTGGCCCGGCGCTCGTTCGCGGTGGCTGCGGCGTTCGGCCTGTTCTCGGCGCTGTCGGTGGTGGTGCTCGGC
GATGAGAGCGGCTATGCCGCCAACGAACACCAGAAGATGAAGCTGGCCGCAATCGAGGCGATGTGGGAGACCGAAGCGGC
ACCGGCCAACTTCACCGCGTTCGGCATTCCCAACCAGACCACACACCGCAACGATTACGCGATCCAGCTGCCCTACCTGA
TGGGGCTGGTGGCCACGCGCTCGCTGGACCAGCAGATCCCCGGCATCCTGGATCTGGTCAAGCGTGCCGAACACCGCATC
CGCGGCGGGCAGATCGCCTACGGTGCATTGCAACGCCTGCGTGCCGACAAGCACGATGTTGAAGCACGCAAGGTGTTCGA
TGCGCATTGGCAGGATCTGGGCCACGGGCTGCTGCTCAAGCGCTATCGCGATGACATCGGCAATGCCACGCCAGAGCAGA
TTGCACAGGCAGCTATGGACACCGTGCCACGCGTCTTGCCGCTGTTCTGGACGTTCCGGGTGATGGCGGCACTGGGCTTC
TATCTGATCGTCTTCTTCGCCGCCGCGTTCTGGTTCTCGTGCAAGCACACGTTCGAAGACAAGCGCTGGTTCCTGACGGT
GGCGCTGTGGTCGTTGCCGGCACCGTGGATCGCCATCGAATGCGGCTGGTTCGTGGCCGAGTACGGCCGCCAGCCGTGGG
CGGTGGAAGGCGTGCTGCCCACGTTCTATGCCGCCTCCGGTCTTGCCTTGCATCAGATCCTGCTCTCGCTGGGCGGCTTC
GTGGCGCTGTACACGGTGCTGCTGATCATCGAGATCAAGCTGATGCTCAACGCCATCCGCAAAGGCCCGGACGCGTTCTT
TCCCGCCTTGCGTGACACCACCTCCCCTGCCCCCGCGCATGCCGGCGATGCGCTGGCTGGCGCTCAACCGTAA

Upstream 100 bases:

>100_bases
ACCCATCGGTGGCCGCCTTGATTTGGATCAACGCGCCGGGCGCGGCAGGGGCAGATCATCCGCTGTGTTCCTACCGACAC
TCAACCAGGTCCACCCTGCC

Downstream 100 bases:

>100_bases
CGGTCGGAGACACCCATGGATTTCATTGGATTGGACTACACAACGCTGCGCGTGATCTGGTGGCTACTGCTCGGCATCCT
GCTGATCGGGTTTGCGGTCA

Product: cytochrome D ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MIDSTVVELSRLQFALTAMYHFLFVPLTLGLSFMIAIMESVYVMTGKDVWRRMTLFWGVLFGINFAMGVGTGIVMEFQFG
MNWSYYSHYVGDIFGAPLAIEGLMAFFLEATFIGLFFFGWSRLSRVQHLTVTWLMALGTNLSALWILIANGWMQNPTGAV
FNPDTMRMEVVDFMAVLFNPVAQAKFVHTVSAGYVTGAMFVMSISALFLLRGTHRELARRSFAVAAAFGLFSALSVVVLG
DESGYAANEHQKMKLAAIEAMWETEAAPANFTAFGIPNQTTHRNDYAIQLPYLMGLVATRSLDQQIPGILDLVKRAEHRI
RGGQIAYGALQRLRADKHDVEARKVFDAHWQDLGHGLLLKRYRDDIGNATPEQIAQAAMDTVPRVLPLFWTFRVMAALGF
YLIVFFAAAFWFSCKHTFEDKRWFLTVALWSLPAPWIAIECGWFVAEYGRQPWAVEGVLPTFYAASGLALHQILLSLGGF
VALYTVLLIIEIKLMLNAIRKGPDAFFPALRDTTSPAPAHAGDALAGAQP

Sequences:

>Translated_530_residues
MIDSTVVELSRLQFALTAMYHFLFVPLTLGLSFMIAIMESVYVMTGKDVWRRMTLFWGVLFGINFAMGVGTGIVMEFQFG
MNWSYYSHYVGDIFGAPLAIEGLMAFFLEATFIGLFFFGWSRLSRVQHLTVTWLMALGTNLSALWILIANGWMQNPTGAV
FNPDTMRMEVVDFMAVLFNPVAQAKFVHTVSAGYVTGAMFVMSISALFLLRGTHRELARRSFAVAAAFGLFSALSVVVLG
DESGYAANEHQKMKLAAIEAMWETEAAPANFTAFGIPNQTTHRNDYAIQLPYLMGLVATRSLDQQIPGILDLVKRAEHRI
RGGQIAYGALQRLRADKHDVEARKVFDAHWQDLGHGLLLKRYRDDIGNATPEQIAQAAMDTVPRVLPLFWTFRVMAALGF
YLIVFFAAAFWFSCKHTFEDKRWFLTVALWSLPAPWIAIECGWFVAEYGRQPWAVEGVLPTFYAASGLALHQILLSLGGF
VALYTVLLIIEIKLMLNAIRKGPDAFFPALRDTTSPAPAHAGDALAGAQP
>Mature_530_residues
MIDSTVVELSRLQFALTAMYHFLFVPLTLGLSFMIAIMESVYVMTGKDVWRRMTLFWGVLFGINFAMGVGTGIVMEFQFG
MNWSYYSHYVGDIFGAPLAIEGLMAFFLEATFIGLFFFGWSRLSRVQHLTVTWLMALGTNLSALWILIANGWMQNPTGAV
FNPDTMRMEVVDFMAVLFNPVAQAKFVHTVSAGYVTGAMFVMSISALFLLRGTHRELARRSFAVAAAFGLFSALSVVVLG
DESGYAANEHQKMKLAAIEAMWETEAAPANFTAFGIPNQTTHRNDYAIQLPYLMGLVATRSLDQQIPGILDLVKRAEHRI
RGGQIAYGALQRLRADKHDVEARKVFDAHWQDLGHGLLLKRYRDDIGNATPEQIAQAAMDTVPRVLPLFWTFRVMAALGF
YLIVFFAAAFWFSCKHTFEDKRWFLTVALWSLPAPWIAIECGWFVAEYGRQPWAVEGVLPTFYAASGLALHQILLSLGGF
VALYTVLLIIEIKLMLNAIRKGPDAFFPALRDTTSPAPAHAGDALAGAQP

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=523, Percent_Identity=58.1261950286807, Blast_Score=633, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=500, Percent_Identity=53.8, Blast_Score=550, Evalue=1e-158,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 59041; Mature: 59041

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]