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The map label for this gene is cydB [H]

Identifier: 66768205

GI number: 66768205

Start: 2278737

End: 2279888

Strand: Reverse

Name: cydB [H]

Synonym: XC_1884

Alternate gene names: 66768205

Gene position: 2279888-2278737 (Counterclockwise)

Preceding gene: 66768206

Following gene: 66768204

Centisome position: 44.28

GC content: 65.54

Gene sequence:

>1152_bases
ATGGATTTCATTGGATTGGACTACACAACGCTGCGCGTGATCTGGTGGCTACTGCTCGGCATCCTGCTGATCGGGTTTGC
GGTCATGGACGGGTTCGACCTGGGCGTGGGCGCGCTGCTGCCGTTTGTGGCGCGCACCGATGCCGAGCGCCGGCTGGTGG
TCAACACCATCGGCCCGGTATGGGAAGGCAACCAGGTGTGGCTGGTGCTCGGTGGCGGGGCAATCTTCGCAGCCTGGCCA
CCGTTGTATGCGGTGAGCTTTTCGGGCTTTTATCTGGCGATGTTCGTGATCCTGTTTGCGCTGATCCTGCGCCCGGTGGG
TTTCAAATACCGCGGCAAGCTACCGGGGCAGCGCTGGCGCACCAACTGGGACTGGGCGCTGTTTGTCGGCGGCTTCATTC
CGGCGCTGATCATGGGCGTGGCGGTGGGCAACGTGGTGCTGGGTGTGCCATTCCATTTCGACGACAGCCTGCGCGTGTTC
TACACCGGTAGTTTCTTCGGCTTGTTGACGCCCTTCGCGTTGCTGGCCGGCCTGCTCAGCGTGGCGATGCTGGTGGCGCA
TGGCGCGGCGATGCTGGTGCTCAAGACCGACGGCCCGGTTGCGGACCGCGCGGCGCGCTACGGCAGTATTGCGGCCGTGC
TCGGCGTGGCGTTGTTTGCAGGTGCCGGTGCCTGGGTGGCGTTCGGGTTGCCCGGCTATGTGGTGACCTCGGCAACGGTG
ACCGATGCGGCCACTGACCCGCTTGGCAAGACCGCCGCCCTCACCGCCGCCGGTGGCTGGCTGCACAACTACCGCAGCAT
GCCCGCCACTGCAGTTGCGCCGCTGGTCGGCCTGCTGGGATTAGCCCTCAACGCGGCGCTGCTGCGCGCACGCCGTGGCG
GCCTGGCGTTCATTGCCTCGGGCAGTGCCATCGCCGGCATCATCCTGACCGTGGGCTTTGCGCTGTTTCCGTTCCTGCTG
CCCTCTTCCAGCGCACCGGGCTCGAGCCTGACGCTGTGGGATGCCTCCAGCAGCCGGCTGACGCTGTGGATCATGTTGCT
GGCCACTGCGGTGTTCCTGCCGATCATCATCGCCTACACCACCTGGGTCTACCGCGTGCTCAAGGGCAAGGTCACCGCCG
AAGAGATGGCCGGCAATCCCAACGCGTATTGA

Upstream 100 bases:

>100_bases
GGACGCGTTCTTTCCCGCCTTGCGTGACACCACCTCCCCTGCCCCCGCGCATGCCGGCGATGCGCTGGCTGGCGCTCAAC
CGTAACGGTCGGAGACACCC

Downstream 100 bases:

>100_bases
GCGCACACCTGCGGGCGCTGCTGCACGGCGCACCACCGCTCGCATGCCCACACTTCAACGCAACAAGGAGTAACACCGAT
GTGGTATTCCGCATGGATTC

Product: cytochrome D ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MDFIGLDYTTLRVIWWLLLGILLIGFAVMDGFDLGVGALLPFVARTDAERRLVVNTIGPVWEGNQVWLVLGGGAIFAAWP
PLYAVSFSGFYLAMFVILFALILRPVGFKYRGKLPGQRWRTNWDWALFVGGFIPALIMGVAVGNVVLGVPFHFDDSLRVF
YTGSFFGLLTPFALLAGLLSVAMLVAHGAAMLVLKTDGPVADRAARYGSIAAVLGVALFAGAGAWVAFGLPGYVVTSATV
TDAATDPLGKTAALTAAGGWLHNYRSMPATAVAPLVGLLGLALNAALLRARRGGLAFIASGSAIAGIILTVGFALFPFLL
PSSSAPGSSLTLWDASSSRLTLWIMLLATAVFLPIIIAYTTWVYRVLKGKVTAEEMAGNPNAY

Sequences:

>Translated_383_residues
MDFIGLDYTTLRVIWWLLLGILLIGFAVMDGFDLGVGALLPFVARTDAERRLVVNTIGPVWEGNQVWLVLGGGAIFAAWP
PLYAVSFSGFYLAMFVILFALILRPVGFKYRGKLPGQRWRTNWDWALFVGGFIPALIMGVAVGNVVLGVPFHFDDSLRVF
YTGSFFGLLTPFALLAGLLSVAMLVAHGAAMLVLKTDGPVADRAARYGSIAAVLGVALFAGAGAWVAFGLPGYVVTSATV
TDAATDPLGKTAALTAAGGWLHNYRSMPATAVAPLVGLLGLALNAALLRARRGGLAFIASGSAIAGIILTVGFALFPFLL
PSSSAPGSSLTLWDASSSRLTLWIMLLATAVFLPIIIAYTTWVYRVLKGKVTAEEMAGNPNAY
>Mature_383_residues
MDFIGLDYTTLRVIWWLLLGILLIGFAVMDGFDLGVGALLPFVARTDAERRLVVNTIGPVWEGNQVWLVLGGGAIFAAWP
PLYAVSFSGFYLAMFVILFALILRPVGFKYRGKLPGQRWRTNWDWALFVGGFIPALIMGVAVGNVVLGVPFHFDDSLRVF
YTGSFFGLLTPFALLAGLLSVAMLVAHGAAMLVLKTDGPVADRAARYGSIAAVLGVALFAGAGAWVAFGLPGYVVTSATV
TDAATDPLGKTAALTAAGGWLHNYRSMPATAVAPLVGLLGLALNAALLRARRGGLAFIASGSAIAGIILTVGFALFPFLL
PSSSAPGSSLTLWDASSSRLTLWIMLLATAVFLPIIIAYTTWVYRVLKGKVTAEEMAGNPNAY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=377, Percent_Identity=48.2758620689655, Blast_Score=373, Evalue=1e-105,
Organism=Escherichia coli, GI1787213, Length=376, Percent_Identity=47.0744680851064, Blast_Score=342, Evalue=3e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 40521; Mature: 40521

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFIGLDYTTLRVIWWLLLGILLIGFAVMDGFDLGVGALLPFVARTDAERRLVVNTIGPV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEECCCCC
WEGNQVWLVLGGGAIFAAWPPLYAVSFSGFYLAMFVILFALILRPVGFKYRGKLPGQRWR
CCCCEEEEEEECCEEEECCCCHHEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
TNWDWALFVGGFIPALIMGVAVGNVVLGVPFHFDDSLRVFYTGSFFGLLTPFALLAGLLS
CCCCHHHHHHHHHHHHHHHHHHHHHHEECCEECCCCEEEEEECCHHHHHHHHHHHHHHHH
VAMLVAHGAAMLVLKTDGPVADRAARYGSIAAVLGVALFAGAGAWVAFGLPGYVVTSATV
HHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEECEE
TDAATDPLGKTAALTAAGGWLHNYRSMPATAVAPLVGLLGLALNAALLRARRGGLAFIAS
CCCCCCCCCCCCEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
GSAIAGIILTVGFALFPFLLPSSSAPGSSLTLWDASSSRLTLWIMLLATAVFLPIIIAYT
CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
TWVYRVLKGKVTAEEMAGNPNAY
HHHHHHHHCCCCHHHHCCCCCCC
>Mature Secondary Structure
MDFIGLDYTTLRVIWWLLLGILLIGFAVMDGFDLGVGALLPFVARTDAERRLVVNTIGPV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEECCCCC
WEGNQVWLVLGGGAIFAAWPPLYAVSFSGFYLAMFVILFALILRPVGFKYRGKLPGQRWR
CCCCEEEEEEECCEEEECCCCHHEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
TNWDWALFVGGFIPALIMGVAVGNVVLGVPFHFDDSLRVFYTGSFFGLLTPFALLAGLLS
CCCCHHHHHHHHHHHHHHHHHHHHHHEECCEECCCCEEEEEECCHHHHHHHHHHHHHHHH
VAMLVAHGAAMLVLKTDGPVADRAARYGSIAAVLGVALFAGAGAWVAFGLPGYVVTSATV
HHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEECEE
TDAATDPLGKTAALTAAGGWLHNYRSMPATAVAPLVGLLGLALNAALLRARRGGLAFIAS
CCCCCCCCCCCCEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
GSAIAGIILTVGFALFPFLLPSSSAPGSSLTLWDASSSRLTLWIMLLATAVFLPIIIAYT
CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
TWVYRVLKGKVTAEEMAGNPNAY
HHHHHHHHCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]