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The map label for this gene is sodA

Identifier: 66768158

GI number: 66768158

Start: 2230667

End: 2231278

Strand: Direct

Name: sodA

Synonym: XC_1837

Alternate gene names: 66768158

Gene position: 2230667-2231278 (Clockwise)

Preceding gene: 66768155

Following gene: 66768160

Centisome position: 43.32

GC content: 60.78

Gene sequence:

>612_bases
ATGGCTTATACCCTTCCGCAGTTGCCCTACGCTTACGACGCGCTGGAACCGAACATCGATGCGCAGACGATGGAAATCCA
TCACACCAAGCATCACCAGACCTACATCAACAACGTCAATGCGGCGCTGGAAGGGACCGAGTACGCCGACCTGCCGGTTG
AGGAGCTGGTCTCCAAGTTGAAGAGCCTGCCGGAAAACCTGCAGGGCCCGGTGCGTAACAACGGTGGTGGCCATGCCAAC
CATTCGCTGTTCTGGACCGTGATGTCCCCCAACGGCGGCGGCGAGCCCAAGGGCGAGGTCGCCAAGGCGATCGACAAGGA
CATCGGCGGTTTCGAGAAGTTCAAGGAAGCCTTCACCAAGGCCGCGCTGAGCCGTTTCGGTTCGGGCTGGGCATGGTTGA
GCGTCACCCCGGACAAGAAGGTCGTGGTCGAAAGCACCGCCAACCAGGACAGCCCGCTGTTCGAAGGCAACACGCCGATC
CTGGGCCTGGACGTGTGGGAACACGCCTATTACCTGAAGTATCAGAACCGTCGCCCGGACTACATCGGCGCGTTCTACAA
CGTGGTGAACTGGGACGAAGTCGAGCGCCGTTACCACGCCGCGATCGCCTGA

Upstream 100 bases:

>100_bases
AAGTTTCCCTCGCCTCACCCTTGGTAAGCGCAGTCCAGGTCCTTACCATCTACCCCGCAACGCCCGGTCTTTTGCCGGGC
GGCAAGTCCAGGAGACCCTC

Downstream 100 bases:

>100_bases
GTCTGCGCTGATGCTGTAACGCAAGAAGGCCGGGAGCGATCCCGGCCTTCTTGTTTGCTGCGGTCTGTCGCGTAGGAGCG
ACCTTGGTCGCGACGAGGCG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAYTLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPVEELVSKLKSLPENLQGPVRNNGGGHAN
HSLFWTVMSPNGGGEPKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSVTPDKKVVVESTANQDSPLFEGNTPI
LGLDVWEHAYYLKYQNRRPDYIGAFYNVVNWDEVERRYHAAIA

Sequences:

>Translated_203_residues
MAYTLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPVEELVSKLKSLPENLQGPVRNNGGGHAN
HSLFWTVMSPNGGGEPKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSVTPDKKVVVESTANQDSPLFEGNTPI
LGLDVWEHAYYLKYQNRRPDYIGAFYNVVNWDEVERRYHAAIA
>Mature_202_residues
AYTLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPVEELVSKLKSLPENLQGPVRNNGGGHANH
SLFWTVMSPNGGGEPKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSVTPDKKVVVESTANQDSPLFEGNTPIL
GLDVWEHAYYLKYQNRRPDYIGAFYNVVNWDEVERRYHAAIA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family

Homologues:

Organism=Homo sapiens, GI67782307, Length=202, Percent_Identity=49.5049504950495, Blast_Score=202, Evalue=1e-52,
Organism=Homo sapiens, GI67782305, Length=202, Percent_Identity=49.5049504950495, Blast_Score=202, Evalue=1e-52,
Organism=Homo sapiens, GI67782309, Length=202, Percent_Identity=38.6138613861386, Blast_Score=142, Evalue=2e-34,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=62.3188405797101, Blast_Score=258, Evalue=2e-70,
Organism=Escherichia coli, GI1787946, Length=200, Percent_Identity=45, Blast_Score=191, Evalue=4e-50,
Organism=Caenorhabditis elegans, GI17506561, Length=204, Percent_Identity=43.1372549019608, Blast_Score=166, Evalue=6e-42,
Organism=Caenorhabditis elegans, GI17569479, Length=199, Percent_Identity=43.21608040201, Blast_Score=166, Evalue=1e-41,
Organism=Saccharomyces cerevisiae, GI6321796, Length=206, Percent_Identity=41.2621359223301, Blast_Score=149, Evalue=3e-37,
Organism=Drosophila melanogaster, GI17136812, Length=202, Percent_Identity=44.5544554455446, Blast_Score=168, Evalue=2e-42,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): SODM_XANC8 (P0C0F9)

Other databases:

- EMBL:   U42464
- EMBL:   CP000050
- RefSeq:   YP_242920.1
- ProteinModelPortal:   P0C0F9
- SMR:   P0C0F9
- STRING:   P0C0F9
- GeneID:   3380384
- GenomeReviews:   CP000050_GR
- KEGG:   xcb:XC_1837
- eggNOG:   COG0605
- HOGENOM:   HBG507761
- OMA:   WDEVARR
- PhylomeDB:   P0C0F9
- ProtClustDB:   CLSK451481
- BioCyc:   XCAM314565:XC_1837-MONOMER
- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831
- PANTHER:   PTHR11404
- PIRSF:   PIRSF000349
- PRINTS:   PR01703

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N; SSF46609 SODismutase; SSF54719 SODismutase

EC number: =1.15.1.1

Molecular weight: Translated: 22722; Mature: 22590

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYTLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPVEELVSKL
CCCCCCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHH
KSLPENLQGPVRNNGGGHANHSLFWTVMSPNGGGEPKGEVAKAIDKDIGGFEKFKEAFTK
HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
AALSRFGSGWAWLSVTPDKKVVVESTANQDSPLFEGNTPILGLDVWEHAYYLKYQNRRPD
HHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEHHHHHEEEEEECCCCCC
YIGAFYNVVNWDEVERRYHAAIA
HHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
AYTLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPVEELVSKL
CCCCCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHH
KSLPENLQGPVRNNGGGHANHSLFWTVMSPNGGGEPKGEVAKAIDKDIGGFEKFKEAFTK
HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
AALSRFGSGWAWLSVTPDKKVVVESTANQDSPLFEGNTPILGLDVWEHAYYLKYQNRRPD
HHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEHHHHHEEEEEECCCCCC
YIGAFYNVVNWDEVERRYHAAIA
HHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8810073