| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is amiC [H]
Identifier: 66768137
GI number: 66768137
Start: 2207623
End: 2209314
Strand: Direct
Name: amiC [H]
Synonym: XC_1816
Alternate gene names: 66768137
Gene position: 2207623-2209314 (Clockwise)
Preceding gene: 66768136
Following gene: 66768138
Centisome position: 42.88
GC content: 68.26
Gene sequence:
>1692_bases GTGATTGAATCCGGCTCCATGACCCAGGGGAGCCACCATCGCTTTGCTTTCGCCCTGACCGCCGGCCTGAGCCTGGCGGT TTTTAGTGCGCGGGCAGGCGAAATCAAGCAAGTGGATGTCAGCACCGGGGCCACGGGCACGCGTGCAGAGATCCAACTTG CCGGCAGCGGCGGGTTCAAGACCTTGTCGCTGGCCAATCCCAATCGACTGGTGGTGGATTTCCCGGCCTCCTCGGCAAAG AGCGGCTTGAAGCTGCCGGCCGCCGCCGGGCTGGTGACGTCGGTGCGCACCGGGCAACCGGTCCCGGGGACCTTCCGGGT GGTGTTCGAGCTGGCAACGCCAGTCACTGCGCTGAAGCCGCAGATGCAGACCCTGGGCAGCGCCTCGACGCTGGTGATCG AGTGGCCCGGCGATTTCGCGCCGGCCAAGCCGGTCGCTTCAACATCAAGCGCTGTGCCAGCAGCAACAACGCCGCCAGCC GCAGTGCCTGCCACACGTCCGCTGGATGCACAGGCGGAAGCTGCACGTGCCACTGCGGCGCTCGCGGCCTCCGCACAGCG CGCCTCGGCGCTTCCACCGCCAACCCCGGCACCAGCGCCCACGCCGGTACCCGTGCCTGCATCGGCGATGCCGACAGTGA CGCCTGCGCCGGTGCCCACGACGATTGCCACTGGCGTGCCGACTCCGCGTCCCGGGACGGTTGCCGCACCAGGCGCGCCC GCCACGACCGGCGGCACCCGCACCACGATCGCCACGGGCACGCCGTCGCCGGCAGCCATCTTGAACGGTGGCAACGTGGC GCAGGTCGCGCCGCAGGGCGCAGCCGTGACGTCGGCCGGTGTGGCTGCCGCCGATGCGCAAAATGACGATGTGCCGCCGC GCCCGCTGCTGCCAAGCGAGGCATCGCGCGTCAAGATGGCACCCGGCATGCGTCCGCTGGTGGTGGCCATCGATCCCGGC CACGGCGGTCAGGATCCCGGCGCCATGGGCCCGACCGGCAAGCGCGAAAAAGACGTCACGCTGGCCATCGGCCGCGAGCT CGCACGCCAGATCAACGCCACGCAGGGCATGAAGGCGTACATGACCCGCGATACCGACGTGTTCATTCCGCTGCCGATGC GTGCGCAGAAGGCACGCTCGGCCAAGGCCGACATCTTCATCTCCATTCATGCCGACGCTGCGGAAAACCGCAGCGCCACC GGTTCATCGGTCTATGTGCTGTCGACCAAGGGTGCGTCGTCGCAGCGTGCACGCTGGCTGGCCGACAAGGAAAATGCCGC CGACCTCGTCGGTGGCGTGCGCCTGCAGCAGACCGAAAGCACGTTGGCCAACGTCTTGCTGGACCTGGCCCAGAGCGGCC ACATGAAGGCATCCGAAGACGCCGCAGGCCATGTGCTGGGCGGTTTGAAGCGCATCGGCAACAATCACAAGCCGCAGCTG GAACGCGCCAATTTCGCGGTGCTGCGCACTTCCGACATGCCGGCGATGCTGGTGGAAACCGCCTTCATCTCCAACCCGGA TGAAGAGCGCCGGCTGATCGACCCGTCGTATCAGCGCAAGATCGCCTCCGCGGTGCTGGACGGTATCGATACGTTCTTCA CCCGTCAGCCGCCCCCGGGCACCTTGTTCGCGGCACGTGCGCAGGCCGAGGCCGACGCCGCAGTCGGCACCGTGGCCGGC GGCAGCCGCTGA
Upstream 100 bases:
>100_bases GCGCGGGACGAGTTGCGGGCGCTTTTTGCCGCCGAACAAGAGGAATGAACGCCAGGTTATGGATTATTAAGGGAAATTGC CTTGCAATTCGTGCGTTCGG
Downstream 100 bases:
>100_bases GCCGCTCGGCTATCATTCCGCACTGATTCCTCGATGACGGCGCCTGGCGCCGCCGGATGGCCGTGCCGACGTTTTTCCCC TTGATGTCATCATTCGCCCA
Product: N-acetylmuramoyl-L-alanine amidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 563; Mature: 563
Protein sequence:
>563_residues MIESGSMTQGSHHRFAFALTAGLSLAVFSARAGEIKQVDVSTGATGTRAEIQLAGSGGFKTLSLANPNRLVVDFPASSAK SGLKLPAAAGLVTSVRTGQPVPGTFRVVFELATPVTALKPQMQTLGSASTLVIEWPGDFAPAKPVASTSSAVPAATTPPA AVPATRPLDAQAEAARATAALAASAQRASALPPPTPAPAPTPVPVPASAMPTVTPAPVPTTIATGVPTPRPGTVAAPGAP ATTGGTRTTIATGTPSPAAILNGGNVAQVAPQGAAVTSAGVAAADAQNDDVPPRPLLPSEASRVKMAPGMRPLVVAIDPG HGGQDPGAMGPTGKREKDVTLAIGRELARQINATQGMKAYMTRDTDVFIPLPMRAQKARSAKADIFISIHADAAENRSAT GSSVYVLSTKGASSQRARWLADKENAADLVGGVRLQQTESTLANVLLDLAQSGHMKASEDAAGHVLGGLKRIGNNHKPQL ERANFAVLRTSDMPAMLVETAFISNPDEERRLIDPSYQRKIASAVLDGIDTFFTRQPPPGTLFAARAQAEADAAVGTVAG GSR
Sequences:
>Translated_563_residues MIESGSMTQGSHHRFAFALTAGLSLAVFSARAGEIKQVDVSTGATGTRAEIQLAGSGGFKTLSLANPNRLVVDFPASSAK SGLKLPAAAGLVTSVRTGQPVPGTFRVVFELATPVTALKPQMQTLGSASTLVIEWPGDFAPAKPVASTSSAVPAATTPPA AVPATRPLDAQAEAARATAALAASAQRASALPPPTPAPAPTPVPVPASAMPTVTPAPVPTTIATGVPTPRPGTVAAPGAP ATTGGTRTTIATGTPSPAAILNGGNVAQVAPQGAAVTSAGVAAADAQNDDVPPRPLLPSEASRVKMAPGMRPLVVAIDPG HGGQDPGAMGPTGKREKDVTLAIGRELARQINATQGMKAYMTRDTDVFIPLPMRAQKARSAKADIFISIHADAAENRSAT GSSVYVLSTKGASSQRARWLADKENAADLVGGVRLQQTESTLANVLLDLAQSGHMKASEDAAGHVLGGLKRIGNNHKPQL ERANFAVLRTSDMPAMLVETAFISNPDEERRLIDPSYQRKIASAVLDGIDTFFTRQPPPGTLFAARAQAEADAAVGTVAG GSR >Mature_563_residues MIESGSMTQGSHHRFAFALTAGLSLAVFSARAGEIKQVDVSTGATGTRAEIQLAGSGGFKTLSLANPNRLVVDFPASSAK SGLKLPAAAGLVTSVRTGQPVPGTFRVVFELATPVTALKPQMQTLGSASTLVIEWPGDFAPAKPVASTSSAVPAATTPPA AVPATRPLDAQAEAARATAALAASAQRASALPPPTPAPAPTPVPVPASAMPTVTPAPVPTTIATGVPTPRPGTVAAPGAP ATTGGTRTTIATGTPSPAAILNGGNVAQVAPQGAAVTSAGVAAADAQNDDVPPRPLLPSEASRVKMAPGMRPLVVAIDPG HGGQDPGAMGPTGKREKDVTLAIGRELARQINATQGMKAYMTRDTDVFIPLPMRAQKARSAKADIFISIHADAAENRSAT GSSVYVLSTKGASSQRARWLADKENAADLVGGVRLQQTESTLANVLLDLAQSGHMKASEDAAGHVLGGLKRIGNNHKPQL ERANFAVLRTSDMPAMLVETAFISNPDEERRLIDPSYQRKIASAVLDGIDTFFTRQPPPGTLFAARAQAEADAAVGTVAG GSR
Specific function: Cell-wall hydrolase involved in septum cleavage during cell division [H]
COG id: COG0860
COG function: function code M; N-acetylmuramoyl-L-alanine amidase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]
Homologues:
Organism=Escherichia coli, GI87082163, Length=223, Percent_Identity=47.5336322869955, Blast_Score=217, Evalue=2e-57, Organism=Escherichia coli, GI1790611, Length=230, Percent_Identity=45.6521739130435, Blast_Score=200, Evalue=2e-52, Organism=Escherichia coli, GI1788776, Length=271, Percent_Identity=40.2214022140221, Blast_Score=184, Evalue=1e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021731 - InterPro: IPR002508 - InterPro: IPR006311 [H]
Pfam domain/function: PF01520 Amidase_3; PF11741 AMIN [H]
EC number: =3.5.1.28 [H]
Molecular weight: Translated: 57272; Mature: 57272
Theoretical pI: Translated: 10.46; Mature: 10.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIESGSMTQGSHHRFAFALTAGLSLAVFSARAGEIKQVDVSTGATGTRAEIQLAGSGGFK CCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCEE TLSLANPNRLVVDFPASSAKSGLKLPAAAGLVTSVRTGQPVPGTFRVVFELATPVTALKP EEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHEEEEEHHCCHHHHCH QMQTLGSASTLVIEWPGDFAPAKPVASTSSAVPAATTPPAAVPATRPLDAQAEAARATAA HHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH LAASAQRASALPPPTPAPAPTPVPVPASAMPTVTPAPVPTTIATGVPTPRPGTVAAPGAP HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEECCCCC ATTGGTRTTIATGTPSPAAILNGGNVAQVAPQGAAVTSAGVAAADAQNDDVPPRPLLPSE CCCCCCEEEEECCCCCCCEEECCCCEEEECCCCCEEECCCCEECCCCCCCCCCCCCCCCC ASRVKMAPGMRPLVVAIDPGHGGQDPGAMGPTGKREKDVTLAIGRELARQINATQGMKAY CCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCEEE MTRDTDVFIPLPMRAQKARSAKADIFISIHADAAENRSATGSSVYVLSTKGASSQRARWL EECCCEEEEECCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHC ADKENAADLVGGVRLQQTESTLANVLLDLAQSGHMKASEDAAGHVLGGLKRIGNNHKPQL CCCCCHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCC ERANFAVLRTSDMPAMLVETAFISNPDEERRLIDPSYQRKIASAVLDGIDTFFTRQPPPG CCCCEEEEEECCCCHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC TLFAARAQAEADAAVGTVAGGSR CEEEECCCCCCCHHEEECCCCCC >Mature Secondary Structure MIESGSMTQGSHHRFAFALTAGLSLAVFSARAGEIKQVDVSTGATGTRAEIQLAGSGGFK CCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCEE TLSLANPNRLVVDFPASSAKSGLKLPAAAGLVTSVRTGQPVPGTFRVVFELATPVTALKP EEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHEEEEEHHCCHHHHCH QMQTLGSASTLVIEWPGDFAPAKPVASTSSAVPAATTPPAAVPATRPLDAQAEAARATAA HHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH LAASAQRASALPPPTPAPAPTPVPVPASAMPTVTPAPVPTTIATGVPTPRPGTVAAPGAP HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEECCCCC ATTGGTRTTIATGTPSPAAILNGGNVAQVAPQGAAVTSAGVAAADAQNDDVPPRPLLPSE CCCCCCEEEEECCCCCCCEEECCCCEEEECCCCCEEECCCCEECCCCCCCCCCCCCCCCC ASRVKMAPGMRPLVVAIDPGHGGQDPGAMGPTGKREKDVTLAIGRELARQINATQGMKAY CCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCEEE MTRDTDVFIPLPMRAQKARSAKADIFISIHADAAENRSATGSSVYVLSTKGASSQRARWL EECCCEEEEECCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHC ADKENAADLVGGVRLQQTESTLANVLLDLAQSGHMKASEDAAGHVLGGLKRIGNNHKPQL CCCCCHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCC ERANFAVLRTSDMPAMLVETAFISNPDEERRLIDPSYQRKIASAVLDGIDTFFTRQPPPG CCCCEEEEEECCCCHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC TLFAARAQAEADAAVGTVAGGSR CEEEECCCCCCCHHEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]