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The map label for this gene is ydeP [H]

Identifier: 66768083

GI number: 66768083

Start: 2141456

End: 2143804

Strand: Direct

Name: ydeP [H]

Synonym: XC_1762

Alternate gene names: 66768083

Gene position: 2141456-2143804 (Clockwise)

Preceding gene: 66768082

Following gene: 66768084

Centisome position: 41.59

GC content: 65.52

Gene sequence:

>2349_bases
ATGAGCAAGAAAACCATCAAGCAGTACGACAATCCCGCGGGCGGCTGGGGCGCATTGCGCTCGGTGGCCAAACACCTGAT
GGAACAGGACATCGCGGTGCAGGGCGCCAAGACGCTGCTGCACGCCAACCAGCCCGACGGCTTCGATTGCCCGGGTTGCG
CGTGGCCGGATCGCGACCACACCTCCACCTTTGAATTCTGCGAGAACGGCGCCAAGGCCGTGGCCGCCGAATCCACCGCG
CGCCGCGCCGGGCTGGAGTTGTTTGCCTCCCACAGCGTGAGCCTGCTGTCGCAGTACAGCGACTACTGGCTGGAAGGGCA
GGGCCGCCTGACGCATCCGATGCGCTACGACGCAGCGACCGACCATTACGTGCCGGTGAGCTGGGACGACGCGTTTGCGC
ACATCGCCGGGCATCTCAATGGCCTGGCCACGCCGGACGAGGCGATCTTCTACACCTCCGGGCGCACGAGCAATGAGGCG
GCATTTCTGTATCAGCTGTTCGTGCGCGAGTTCGGCACCAACAATTTCCCCGATTGCTCGAACATGTGCCATGAGCCATC
CGGCACCGCGCTGCGCTCGCAGATCGGTGTGGGCAAGGGTACGGTGTCGCTGCATGATTTCGAGCTGGCCGATGCAATCC
TGATCTTCGGCCAGAACCCGGGCACCAACCATCCGCGCATGCTCGGCGAGTTGCGCCAGGCCTCCAAGCGTGGCGCAGCG
ATTGCCGCGTTCAATCCGCTGCGCGAACGCGGACTGGAGAAATTTGCCGACCCGCAGGACAAGCTGGAGATGCTGCATAA
CGGTTCCACGCGCATCGCCTCGGATTATTTTCAGCTCAAGATCGGTGGCGACCTGGCCGCGGTGAAGGGCATGATCAAGC
ACGTGCTGGAGCGCGATGCGCAGGCACAGCGCGATGGCACGCCGCGTTTGCTGGACCTGGAATTCATCGACGCGCACACC
GCCAATTTCGACGCCTTCGCTGCCGACGTGCATGCGGAATCCTGGGACACCATCGTCGAAGAGTCCGGCCTGGACGAGGC
CGCGCTGCGCAAGGCCGGCGAGATCTATCTCAAGGCCGAGCGCGTGATCGCCTGCTGGGGCATGGGCATCACCCAGCACA
AGCATTCGGTGGCCACCATCCACATGATCACCAACCTGCTGTTGCTGCGCGGCCACCTGGGCCGCCCCGGCGCAGGCGTG
TGCCCGGTGCGCGGCCACAGCAACGTGCAGGGCGACCGCACGATGATGATCTACGAAAAGCCGCCGGCCACGTTCCTGGA
CACGCTGCAGTCGGTGTTCGGCTTCGACCCGCCGCGTGCGGACGGTTTCGATACGGTTGGTGCGATCGAGGCGATGCTGG
ACGGGCGCGGCAAGGTGTTCTTCGCGATGGGCGGCAACTTCGCAGCGGCCACGCCCGATACCGACGCCACGCACCGCGCG
CTGCGCAATTGCGAGCTGACTGTGCACGTGACCACCAAGCTCAATCGCAGCCATCTGGTGCACGGCAAGGATGCATTGAT
CCTGCCGTGCCTGGGGCGGACCGAGATCGACATCCAGGACGCCGGCTCGCAAGGCGTCACCGTGGAAGATTCGATGAGCA
TGGTGCACCTGTCGGCCGGCATCAATCCGCCGGCGTCGCAGGATCTGCTGTCCGAGCCGGCGATCGTGGCGCGCATGGCC
GAGGCGACGCTGGGCGCGCGCAGCGCGATCCGCTGGCGCTGGCTGGTGGGCGACTATGACCGCATTCGCGATCTGATCGC
GCAGGTGTTCCCGGACTTCGCGGATTTCAACCAGCGCGTACGTACGCCGGGCGGCTTCCGCCTGTCCAATACCGCGCGCG
ACCGCCAGTGGGTGACGCCGGAGCAACGCGCGGTGTTCAAGCCGCATGCGGTGCCCACCGACAACCCGATCCATCGCGCG
CGGCGCAGCCGTGGTGAGCAGATGGTATTCACGCTGGCCACCACGCGTTCGCACGACCAATACAACACCACCATCTATGG
CCTGGACGATCGCTACCGCGGCGTGTTTGGCGAGCGCCGCGTGCTGTTCATCAACGGCGCCGATATCGCGGCGTTGAACA
TGAAGGCTGGCGACTGGGTGGACCTGGAAAGCCTGTGCGAAGACGGCGTGCACCGCGAGGCGCGGCGCTTCCTGCTGGTG
GACTACAACATCCCGCGCGGCTGCCTGGCCGCGTATTACCCGGAGACCAACGCGTTGGTGCCGTTGTCGAGCTTCGCCGA
CGAAGCGCGCACGCCCACGTCCAAATCGATCCCGGTGGTGGTGTTGCCGCATCGCGCAGAAACCGCCGATGCCGCGCCGC
GTGATATCGGAGCGGTGCTTGTCCGCTGA

Upstream 100 bases:

>100_bases
GTGCGGGTTTGACCCTGATCGGGTTTGCCCGCGATCACGATTGTGTTGTTTACAGCCATCCTCAACGCCTGGACCTGGGC
GTTGCCGTGGGAGAGCCCGC

Downstream 100 bases:

>100_bases
TCCACAGCTCACCGCGCAGCTGCTGCACGCGCTGGCCGATGCGCCCGAGGGCGTATCGCTGGCGCGGCTGTGCAAGCAGC
TTGGCGTGCGCATGAGCGTG

Product: formate dehydrogenase a chain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 782; Mature: 781

Protein sequence:

>782_residues
MSKKTIKQYDNPAGGWGALRSVAKHLMEQDIAVQGAKTLLHANQPDGFDCPGCAWPDRDHTSTFEFCENGAKAVAAESTA
RRAGLELFASHSVSLLSQYSDYWLEGQGRLTHPMRYDAATDHYVPVSWDDAFAHIAGHLNGLATPDEAIFYTSGRTSNEA
AFLYQLFVREFGTNNFPDCSNMCHEPSGTALRSQIGVGKGTVSLHDFELADAILIFGQNPGTNHPRMLGELRQASKRGAA
IAAFNPLRERGLEKFADPQDKLEMLHNGSTRIASDYFQLKIGGDLAAVKGMIKHVLERDAQAQRDGTPRLLDLEFIDAHT
ANFDAFAADVHAESWDTIVEESGLDEAALRKAGEIYLKAERVIACWGMGITQHKHSVATIHMITNLLLLRGHLGRPGAGV
CPVRGHSNVQGDRTMMIYEKPPATFLDTLQSVFGFDPPRADGFDTVGAIEAMLDGRGKVFFAMGGNFAAATPDTDATHRA
LRNCELTVHVTTKLNRSHLVHGKDALILPCLGRTEIDIQDAGSQGVTVEDSMSMVHLSAGINPPASQDLLSEPAIVARMA
EATLGARSAIRWRWLVGDYDRIRDLIAQVFPDFADFNQRVRTPGGFRLSNTARDRQWVTPEQRAVFKPHAVPTDNPIHRA
RRSRGEQMVFTLATTRSHDQYNTTIYGLDDRYRGVFGERRVLFINGADIAALNMKAGDWVDLESLCEDGVHREARRFLLV
DYNIPRGCLAAYYPETNALVPLSSFADEARTPTSKSIPVVVLPHRAETADAAPRDIGAVLVR

Sequences:

>Translated_782_residues
MSKKTIKQYDNPAGGWGALRSVAKHLMEQDIAVQGAKTLLHANQPDGFDCPGCAWPDRDHTSTFEFCENGAKAVAAESTA
RRAGLELFASHSVSLLSQYSDYWLEGQGRLTHPMRYDAATDHYVPVSWDDAFAHIAGHLNGLATPDEAIFYTSGRTSNEA
AFLYQLFVREFGTNNFPDCSNMCHEPSGTALRSQIGVGKGTVSLHDFELADAILIFGQNPGTNHPRMLGELRQASKRGAA
IAAFNPLRERGLEKFADPQDKLEMLHNGSTRIASDYFQLKIGGDLAAVKGMIKHVLERDAQAQRDGTPRLLDLEFIDAHT
ANFDAFAADVHAESWDTIVEESGLDEAALRKAGEIYLKAERVIACWGMGITQHKHSVATIHMITNLLLLRGHLGRPGAGV
CPVRGHSNVQGDRTMMIYEKPPATFLDTLQSVFGFDPPRADGFDTVGAIEAMLDGRGKVFFAMGGNFAAATPDTDATHRA
LRNCELTVHVTTKLNRSHLVHGKDALILPCLGRTEIDIQDAGSQGVTVEDSMSMVHLSAGINPPASQDLLSEPAIVARMA
EATLGARSAIRWRWLVGDYDRIRDLIAQVFPDFADFNQRVRTPGGFRLSNTARDRQWVTPEQRAVFKPHAVPTDNPIHRA
RRSRGEQMVFTLATTRSHDQYNTTIYGLDDRYRGVFGERRVLFINGADIAALNMKAGDWVDLESLCEDGVHREARRFLLV
DYNIPRGCLAAYYPETNALVPLSSFADEARTPTSKSIPVVVLPHRAETADAAPRDIGAVLVR
>Mature_781_residues
SKKTIKQYDNPAGGWGALRSVAKHLMEQDIAVQGAKTLLHANQPDGFDCPGCAWPDRDHTSTFEFCENGAKAVAAESTAR
RAGLELFASHSVSLLSQYSDYWLEGQGRLTHPMRYDAATDHYVPVSWDDAFAHIAGHLNGLATPDEAIFYTSGRTSNEAA
FLYQLFVREFGTNNFPDCSNMCHEPSGTALRSQIGVGKGTVSLHDFELADAILIFGQNPGTNHPRMLGELRQASKRGAAI
AAFNPLRERGLEKFADPQDKLEMLHNGSTRIASDYFQLKIGGDLAAVKGMIKHVLERDAQAQRDGTPRLLDLEFIDAHTA
NFDAFAADVHAESWDTIVEESGLDEAALRKAGEIYLKAERVIACWGMGITQHKHSVATIHMITNLLLLRGHLGRPGAGVC
PVRGHSNVQGDRTMMIYEKPPATFLDTLQSVFGFDPPRADGFDTVGAIEAMLDGRGKVFFAMGGNFAAATPDTDATHRAL
RNCELTVHVTTKLNRSHLVHGKDALILPCLGRTEIDIQDAGSQGVTVEDSMSMVHLSAGINPPASQDLLSEPAIVARMAE
ATLGARSAIRWRWLVGDYDRIRDLIAQVFPDFADFNQRVRTPGGFRLSNTARDRQWVTPEQRAVFKPHAVPTDNPIHRAR
RSRGEQMVFTLATTRSHDQYNTTIYGLDDRYRGVFGERRVLFINGADIAALNMKAGDWVDLESLCEDGVHREARRFLLVD
YNIPRGCLAAYYPETNALVPLSSFADEARTPTSKSIPVVVLPHRAETADAAPRDIGAVLVR

Specific function: Probably involved in acid resistance [H]

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=763, Percent_Identity=49.4102228047182, Blast_Score=764, Evalue=0.0,
Organism=Escherichia coli, GI3868721, Length=308, Percent_Identity=30.1948051948052, Blast_Score=147, Evalue=3e-36,
Organism=Escherichia coli, GI1788534, Length=413, Percent_Identity=22.2760290556901, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 85977; Mature: 85846

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKTIKQYDNPAGGWGALRSVAKHLMEQDIAVQGAKTLLHANQPDGFDCPGCAWPDRDH
CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCC
TSTFEFCENGAKAVAAESTARRAGLELFASHSVSLLSQYSDYWLEGQGRLTHPMRYDAAT
CHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEECCCCC
DHYVPVSWDDAFAHIAGHLNGLATPDEAIFYTSGRTSNEAAFLYQLFVREFGTNNFPDCS
CCEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHH
NMCHEPSGTALRSQIGVGKGTVSLHDFELADAILIFGQNPGTNHPRMLGELRQASKRGAA
HHCCCCCCCHHHHHCCCCCCEEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCE
IAAFNPLRERGLEKFADPQDKLEMLHNGSTRIASDYFQLKIGGDLAAVKGMIKHVLERDA
EEECCHHHHHHHHHHCCHHHHHHHHHCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHH
QAQRDGTPRLLDLEFIDAHTANFDAFAADVHAESWDTIVEESGLDEAALRKAGEIYLKAE
HHHCCCCCCEEEEEEECCCCCCCCCEEEHHCCCHHHHHHHHCCCCHHHHHCCCCEEEEEC
RVIACWGMGITQHKHSVATIHMITNLLLLRGHLGRPGAGVCPVRGHSNVQGDRTMMIYEK
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
PPATFLDTLQSVFGFDPPRADGFDTVGAIEAMLDGRGKVFFAMGGNFAAATPDTDATHRA
CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCEEECCCCCHHHHHH
LRNCELTVHVTTKLNRSHLVHGKDALILPCLGRTEIDIQDAGSQGVTVEDSMSMVHLSAG
HHCCEEEEEEEEECCCCEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCEEEEECC
INPPASQDLLSEPAIVARMAEATLGARSAIRWRWLVGDYDRIRDLIAQVFPDFADFNQRV
CCCCCCHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHH
RTPGGFRLSNTARDRQWVTPEQRAVFKPHAVPTDNPIHRARRSRGEQMVFTLATTRSHDQ
CCCCCEEECCCCCCCCCCCCCHHCEECCCCCCCCCHHHHHHHCCCCEEEEEEEECCCCCC
YNTTIYGLDDRYRGVFGERRVLFINGADIAALNMKAGDWVDLESLCEDGVHREARRFLLV
CCCEEEECCHHHHCCCCCCEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEE
DYNIPRGCLAAYYPETNALVPLSSFADEARTPTSKSIPVVVLPHRAETADAAPRDIGAVL
ECCCCCHHHEEECCCCCCEEECHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCEE
VR
CC
>Mature Secondary Structure 
SKKTIKQYDNPAGGWGALRSVAKHLMEQDIAVQGAKTLLHANQPDGFDCPGCAWPDRDH
CCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCC
TSTFEFCENGAKAVAAESTARRAGLELFASHSVSLLSQYSDYWLEGQGRLTHPMRYDAAT
CHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEECCCCC
DHYVPVSWDDAFAHIAGHLNGLATPDEAIFYTSGRTSNEAAFLYQLFVREFGTNNFPDCS
CCEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHH
NMCHEPSGTALRSQIGVGKGTVSLHDFELADAILIFGQNPGTNHPRMLGELRQASKRGAA
HHCCCCCCCHHHHHCCCCCCEEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCE
IAAFNPLRERGLEKFADPQDKLEMLHNGSTRIASDYFQLKIGGDLAAVKGMIKHVLERDA
EEECCHHHHHHHHHHCCHHHHHHHHHCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHH
QAQRDGTPRLLDLEFIDAHTANFDAFAADVHAESWDTIVEESGLDEAALRKAGEIYLKAE
HHHCCCCCCEEEEEEECCCCCCCCCEEEHHCCCHHHHHHHHCCCCHHHHHCCCCEEEEEC
RVIACWGMGITQHKHSVATIHMITNLLLLRGHLGRPGAGVCPVRGHSNVQGDRTMMIYEK
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
PPATFLDTLQSVFGFDPPRADGFDTVGAIEAMLDGRGKVFFAMGGNFAAATPDTDATHRA
CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCEEECCCCCHHHHHH
LRNCELTVHVTTKLNRSHLVHGKDALILPCLGRTEIDIQDAGSQGVTVEDSMSMVHLSAG
HHCCEEEEEEEEECCCCEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCEEEEECC
INPPASQDLLSEPAIVARMAEATLGARSAIRWRWLVGDYDRIRDLIAQVFPDFADFNQRV
CCCCCCHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHH
RTPGGFRLSNTARDRQWVTPEQRAVFKPHAVPTDNPIHRARRSRGEQMVFTLATTRSHDQ
CCCCCEEECCCCCCCCCCCCCHHCEECCCCCCCCCHHHHHHHCCCCEEEEEEEECCCCCC
YNTTIYGLDDRYRGVFGERRVLFINGADIAALNMKAGDWVDLESLCEDGVHREARRFLLV
CCCEEEECCHHHHCCCCCCEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEE
DYNIPRGCLAAYYPETNALVPLSSFADEARTPTSKSIPVVVLPHRAETADAAPRDIGAVL
ECCCCCHHHEEECCCCCCEEECHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCEE
VR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]