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The map label for this gene is oprB [H]

Identifier: 66768064

GI number: 66768064

Start: 2105796

End: 2106932

Strand: Reverse

Name: oprB [H]

Synonym: XC_1741

Alternate gene names: 66768064

Gene position: 2106932-2105796 (Counterclockwise)

Preceding gene: 66768065

Following gene: 66768063

Centisome position: 40.92

GC content: 65.26

Gene sequence:

>1137_bases
ATGATCGACGGCGGGCGCAAGAACGGCGACGCCTACGCCGGCCAGTTGATGGTCGGCACCGACGTCGATCTGAACAGCCT
GTTCGGCTGGCACGGCGCCACCGTCAAGGCCTACGTCACCAACCGTCACGGCACCAACCTGTCCAACAGCAGCATCGGCA
ACAGCACCTCGGTGCAGGAAATCTACGGCGGCCAGGGCACCCGCCTGGCCAACCTCACCCTGGTGCAGAAACTGTTCGAC
GACCGCCTGGAACTGGAAGCCGGCCGCAGCGTGGCCAACATCCACTTCCTCGGCTCGGACCTGTGCCAGTACTTCCAGGG
CAACTCGGCCTGCGGCAACCCCACCTTCGTGTTCCGCACCAGCAACTTCACCTACTGGCCGGTCTCCAGCTGGGCCGCGC
ACGCCACCGCCTGGGTCACGCCCAAGGTTTACGTGCATGTAGGCGCGTACGAAGTGAACCCGGTGCAGGCCCAGGACGGC
CAGCACGGCCTGAAGTGGAGCACCGACGACACCACCGGCGTGGTGGTGCCCTACGCCATCGGCTACAAGAACAAGGGCGG
CGACGGCAGCATGGCCGCGATGTACGAACTCGGCGGCTGGCAGGACAACTCCGACTACACCGACCCGCTGCGCGACCGCA
ACGGCAACCCGGCTGTGCTCAGCGGCCTGGGCTATGAAAACAAGCAGGGCCGCTCGGGCATGTTCGCCCGCTTCGAACAA
CAGGTCACCAACCCGGATCCGTCCGGCGCCCGTGGCCTGACCGTGTTCGGCGCCATCCTCAAGAGCACCGGCGGCCAGGC
GATCGAGGACCACTTCGTGCAACTGGGCCTGGTGCAGAAGGGCACCTTCGCCAGCCGCCCGCAAGACAACATTGCGTTTG
TGATCACCCAGCAGAAGTACAGCGACGAGGCAATCGAAAACCTGCGCCTGGCCCGCGCCTCGGCCGGCGGCACCGGCACC
CCGGCCGACAACCAGATCATGATGGAGCTCAGCTACGGCATCCAGGTCACCAAGCGCCTGCGCATCGCGCCGAACCTGCA
TTACGTGATCAACCCGGACCAGTTCAACGAGCCGACCCGCAGCAACGACCTGAAGAACGCATTGATCGCGGGCATGCGGA
TCGACTGGAATCTGTGA

Upstream 100 bases:

>100_bases
GTGCCTCTCGCTGGCACTGGCGCTGGCCCCGCTCGCCCACGCGCAGGATGCCGCCGATGCCTTCAAGCTCAAGCTGGGTT
ACACCGGCGAAGCGGCCTCG

Downstream 100 bases:

>100_bases
GTTTGTTGGCGGGTGTGTCCGCGTTGCGTAACCCCGTAGGGGCGAGCTTGCGCGATCAAGCGTTGCCGGTGATGTGCGGT
CGCGCGCAAGCGTGCTCCTG

Product: RpfN protein

Products: NA

Alternate protein names: Glucose porin; Outer membrane protein D1 [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MIDGGRKNGDAYAGQLMVGTDVDLNSLFGWHGATVKAYVTNRHGTNLSNSSIGNSTSVQEIYGGQGTRLANLTLVQKLFD
DRLELEAGRSVANIHFLGSDLCQYFQGNSACGNPTFVFRTSNFTYWPVSSWAAHATAWVTPKVYVHVGAYEVNPVQAQDG
QHGLKWSTDDTTGVVVPYAIGYKNKGGDGSMAAMYELGGWQDNSDYTDPLRDRNGNPAVLSGLGYENKQGRSGMFARFEQ
QVTNPDPSGARGLTVFGAILKSTGGQAIEDHFVQLGLVQKGTFASRPQDNIAFVITQQKYSDEAIENLRLARASAGGTGT
PADNQIMMELSYGIQVTKRLRIAPNLHYVINPDQFNEPTRSNDLKNALIAGMRIDWNL

Sequences:

>Translated_378_residues
MIDGGRKNGDAYAGQLMVGTDVDLNSLFGWHGATVKAYVTNRHGTNLSNSSIGNSTSVQEIYGGQGTRLANLTLVQKLFD
DRLELEAGRSVANIHFLGSDLCQYFQGNSACGNPTFVFRTSNFTYWPVSSWAAHATAWVTPKVYVHVGAYEVNPVQAQDG
QHGLKWSTDDTTGVVVPYAIGYKNKGGDGSMAAMYELGGWQDNSDYTDPLRDRNGNPAVLSGLGYENKQGRSGMFARFEQ
QVTNPDPSGARGLTVFGAILKSTGGQAIEDHFVQLGLVQKGTFASRPQDNIAFVITQQKYSDEAIENLRLARASAGGTGT
PADNQIMMELSYGIQVTKRLRIAPNLHYVINPDQFNEPTRSNDLKNALIAGMRIDWNL
>Mature_378_residues
MIDGGRKNGDAYAGQLMVGTDVDLNSLFGWHGATVKAYVTNRHGTNLSNSSIGNSTSVQEIYGGQGTRLANLTLVQKLFD
DRLELEAGRSVANIHFLGSDLCQYFQGNSACGNPTFVFRTSNFTYWPVSSWAAHATAWVTPKVYVHVGAYEVNPVQAQDG
QHGLKWSTDDTTGVVVPYAIGYKNKGGDGSMAAMYELGGWQDNSDYTDPLRDRNGNPAVLSGLGYENKQGRSGMFARFEQ
QVTNPDPSGARGLTVFGAILKSTGGQAIEDHFVQLGLVQKGTFASRPQDNIAFVITQQKYSDEAIENLRLARASAGGTGT
PADNQIMMELSYGIQVTKRLRIAPNLHYVINPDQFNEPTRSNDLKNALIAGMRIDWNL

Specific function: Substrate-selective channel for a variety of different sugars. Could potentially facilitate the diffusion of diverse compounds, dependent on the presence of a hydroxyl group, but is presumably restricted to carbohydrates. Involved in the transport of gluc

COG id: COG3659

COG function: function code M; Carbohydrate-selective porin

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007049 [H]

Pfam domain/function: PF04966 OprB [H]

EC number: NA

Molecular weight: Translated: 41131; Mature: 41131

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDGGRKNGDAYAGQLMVGTDVDLNSLFGWHGATVKAYVTNRHGTNLSNSSIGNSTSVQE
CCCCCCCCCCCEECEEEEECCCCHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHH
IYGGQGTRLANLTLVQKLFDDRLELEAGRSVANIHFLGSDLCQYFQGNSACGNPTFVFRT
HHCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCCCCEEEEEC
SNFTYWPVSSWAAHATAWVTPKVYVHVGAYEVNPVQAQDGQHGLKWSTDDTTGVVVPYAI
CCEEEECCCCCHHCEEEEECCEEEEEEEEEEECCEECCCCCCCCEECCCCCCCEEEEEEE
GYKNKGGDGSMAAMYELGGWQDNSDYTDPLRDRNGNPAVLSGLGYENKQGRSGMFARFEQ
CCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHH
QVTNPDPSGARGLTVFGAILKSTGGQAIEDHFVQLGLVQKGTFASRPQDNIAFVITQQKY
HHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHEEEEEECCCCCCCCCCCEEEEEECCCC
SDEAIENLRLARASAGGTGTPADNQIMMELSYGIQVTKRLRIAPNLHYVINPDQFNEPTR
CHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCEEEEECCCCCCCCCC
SNDLKNALIAGMRIDWNL
CCHHHHHHHCCEEEEECC
>Mature Secondary Structure
MIDGGRKNGDAYAGQLMVGTDVDLNSLFGWHGATVKAYVTNRHGTNLSNSSIGNSTSVQE
CCCCCCCCCCCEECEEEEECCCCHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHH
IYGGQGTRLANLTLVQKLFDDRLELEAGRSVANIHFLGSDLCQYFQGNSACGNPTFVFRT
HHCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCCCCEEEEEC
SNFTYWPVSSWAAHATAWVTPKVYVHVGAYEVNPVQAQDGQHGLKWSTDDTTGVVVPYAI
CCEEEECCCCCHHCEEEEECCEEEEEEEEEEECCEECCCCCCCCEECCCCCCCEEEEEEE
GYKNKGGDGSMAAMYELGGWQDNSDYTDPLRDRNGNPAVLSGLGYENKQGRSGMFARFEQ
CCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHH
QVTNPDPSGARGLTVFGAILKSTGGQAIEDHFVQLGLVQKGTFASRPQDNIAFVITQQKY
HHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHEEEEEECCCCCCCCCCCEEEEEECCCC
SDEAIENLRLARASAGGTGTPADNQIMMELSYGIQVTKRLRIAPNLHYVINPDQFNEPTR
CHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCEEEEECCCCCCCCCC
SNDLKNALIAGMRIDWNL
CCHHHHHHHCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8125108; 10984043; 2450582; 8132494; 7768797 [H]