Click here to switch to the map view.

The map label for this gene is rraA [C]

Identifier: 66767806

GI number: 66767806

Start: 1783484

End: 1783984

Strand: Direct

Name: rraA [C]

Synonym: XC_1480

Alternate gene names: 66767806

Gene position: 1783484-1783984 (Clockwise)

Preceding gene: 66767803

Following gene: 66767807

Centisome position: 34.64

GC content: 68.66

Gene sequence:

>501_bases
ATGACCTGGACCACCCCCGATCTTTGCGACCGCTTTCCCGAGGTGGCGGTCGCCGAACCGCTGTTTCGGCACTTTGGTGG
GCGCACCACCTTTTCCGGGCCGATCGCCACGGTGCGCTGTGTCGAGGACAACTCGCGCATACGCGAGCTGGCCTCCACGC
CTGGCGACGGGCGCGTGCTGGTGGTCGATGGGCAGGGCTCCTTGCGGCAGGCTTTGTTCGGTGACCAGATCGGCGCACAG
GCGGTGGCCAATGGCTGGGCCGGCGTGCTGATCCACGGGTGCGTGCGCGACGTGGAGATCCTGGCCGGCTTGCCGTTGGG
GGTGCTGGCGTTGGCGGCGTGCCCACGCCGCACCGAGCGCCGCGACCTGGGCGATGTGGACGTGCCGGTGAATTTTGCCG
GCGTGGCGTTCGTCCCCGGGCACTGGCTGTATGCCGATGCGAACGGTGTCGTGGTGGCCGCGACGCCGTTGTCGTTGGAA
ATCGCCGGCGTGGAGCATTGA

Upstream 100 bases:

>100_bases
GCTGGCGACAGCGGATACCTTGCGTCGTGCAACCAGCGCCCGAGGATGCTCTGTCGCTGGCAGCCGGCTACCATCGGGCT
CCCCTTGCCGGAGCGTTGTC

Downstream 100 bases:

>100_bases
TCGATGAGCACAGAGCAGCACAGCAAGCCGATGACCTGGATGATGGTGGGAGCGATGGCGATGGCTGGCATGACAGTGAG
TGGTGTCACCTTGGCCGCTG

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MTWTTPDLCDRFPEVAVAEPLFRHFGGRTTFSGPIATVRCVEDNSRIRELASTPGDGRVLVVDGQGSLRQALFGDQIGAQ
AVANGWAGVLIHGCVRDVEILAGLPLGVLALAACPRRTERRDLGDVDVPVNFAGVAFVPGHWLYADANGVVVAATPLSLE
IAGVEH

Sequences:

>Translated_166_residues
MTWTTPDLCDRFPEVAVAEPLFRHFGGRTTFSGPIATVRCVEDNSRIRELASTPGDGRVLVVDGQGSLRQALFGDQIGAQ
AVANGWAGVLIHGCVRDVEILAGLPLGVLALAACPRRTERRDLGDVDVPVNFAGVAFVPGHWLYADANGVVVAATPLSLE
IAGVEH
>Mature_165_residues
TWTTPDLCDRFPEVAVAEPLFRHFGGRTTFSGPIATVRCVEDNSRIRELASTPGDGRVLVVDGQGSLRQALFGDQIGAQA
VANGWAGVLIHGCVRDVEILAGLPLGVLALAACPRRTERRDLGDVDVPVNFAGVAFVPGHWLYADANGVVVAATPLSLEI
AGVEH

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family

Homologues:

Organism=Escherichia coli, GI1790364, Length=161, Percent_Identity=46.583850931677, Blast_Score=146, Evalue=9e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRAAH_XANC8 (Q4UWM5)

Other databases:

- EMBL:   CP000050
- RefSeq:   YP_242568.1
- HSSP:   Q9KPK1
- ProteinModelPortal:   Q4UWM5
- SMR:   Q4UWM5
- STRING:   Q4UWM5
- GeneID:   3381689
- GenomeReviews:   CP000050_GR
- KEGG:   xcb:XC_1480
- eggNOG:   COG0684
- HOGENOM:   HBG668175
- OMA:   NCALLGD
- PhylomeDB:   Q4UWM5
- ProtClustDB:   PRK09372
- BioCyc:   XCAM314565:XC_1480-MONOMER
- InterPro:   IPR005493
- InterPro:   IPR010203
- Gene3D:   G3DSA:3.50.30.40
- TIGRFAMs:   TIGR01935

Pfam domain/function: PF03737 Methyltransf_6; SSF89562 RNaseE_inh/diMeMenaQ_MeTrfase

EC number: NA

Molecular weight: Translated: 17554; Mature: 17423

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWTTPDLCDRFPEVAVAEPLFRHFGGRTTFSGPIATVRCVEDNSRIRELASTPGDGRVL
CCCCCHHHHHHCCCHHHHHHHHHHCCCCCEECCCCEEEEEECCCHHHHHHHCCCCCCEEE
VVDGQGSLRQALFGDQIGAQAVANGWAGVLIHGCVRDVEILAGLPLGVLALAACPRRTER
EECCCCHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC
RDLGDVDVPVNFAGVAFVPGHWLYADANGVVVAATPLSLEIAGVEH
CCCCCCCCCCEECCEEEECCEEEEECCCCEEEEECCCEEEEEECCC
>Mature Secondary Structure 
TWTTPDLCDRFPEVAVAEPLFRHFGGRTTFSGPIATVRCVEDNSRIRELASTPGDGRVL
CCCCHHHHHHCCCHHHHHHHHHHCCCCCEECCCCEEEEEECCCHHHHHHHCCCCCCEEE
VVDGQGSLRQALFGDQIGAQAVANGWAGVLIHGCVRDVEILAGLPLGVLALAACPRRTER
EECCCCHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC
RDLGDVDVPVNFAGVAFVPGHWLYADANGVVVAATPLSLEIAGVEH
CCCCCCCCCCEECCEEEECCEEEEECCCCEEEEECCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA