Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 66767802

GI number: 66767802

Start: 1775828

End: 1778194

Strand: Direct

Name: yciR [C]

Synonym: XC_1476

Alternate gene names: 66767802

Gene position: 1775828-1778194 (Clockwise)

Preceding gene: 66767801

Following gene: 66767803

Centisome position: 34.49

GC content: 67.47

Gene sequence:

>2367_bases
ATGCAGACGGTGCGTGGCTGGCTCACGCTGCCGTTGGCGCTGTTGATCGTGCTGACCGGCTGCATGGCGGTGCTGTCGGC
ACTGGTGATCGAGGTCCAGGCCGGTGCCACCAGCTGGATCATTGGCGAGAGCCACTGGTCCAAGGCCCAGCAGGAATCGG
TTTACTGGCTGGAGCGCTACCTCGGCAGCGCCGATCCGGCGGATCTGCAGGCGGCCTGTCGCGCACTGGAAGTGCCGTTG
GGCGATCGCGCGGCGCGGTTGGCGGTGGATGCCTCGCCAATCGACTGGGCCGAGGTCTATGCCGGTCTGGCGGCCGGCCG
CAATGCCCGTGAAGACATGCCTCAGATGGTGCGCCTGTACCGGTATGGGCAGCGCCTGCCGTACCTGGGCAGCGCAATTG
CGCTGTGGAAGCACACCGATGGCGACATCCTGCATCTGAGCCTGCTGGCCGACCGGGCGGCCTCCGCCCAGGCCACCGGC
ACGCCGGACGCGCGCGCACTGCAGTCCTTGCGTGCCGAACTGCATCTGCTGGATGGCCGCATGCGGCGCGATGCCGCCCA
GTTCCTGACCTTGCTGACCCGCTGCGCGCGCATGCTGCACGATGTGATGGTGACCTGCAGCCTGGCCACCTTGCTGCTGG
TGCTGAGCACCTGCGTGCTGGCGATCCGGCGCACCCGCGACTACCTGATGTCGCACGAAGGCCGCTTCCGCACCGCGTTT
CAGCATGCCGCGCTGGGCATGGTGAAGTTCGACCTGAGCGGGCGCGTGCTCGATGCCAATGCCTCCCTGGCGAACATCCT
GCAGTACCCGCCAGAGGCCTTGCAGGCCTGCACGCTGGCCGAGGTGATGCACCCCGACGACATCGTGCTGGACAGCCGCG
GGCTGATCGACTGGCCGCGGCTGATGCAGGCTGGCGAGCTACGCTTTCTGCGCTCCGATGGCGGGGTGCTGTGGGGGCGC
TGGAGTGCCTCGCTGGTGGAGCCGGGGCCGCAGGAGCCAAGCCTGGTGCTGGCGGTGATCGAGGATGTCTCGCAGGCGCA
CGAACTGGCCGACGAAGTGGCCTATCACGCGCGCCATGATGCGCTCACCGGGTTGATCAATCGCCGCGAGATCGAGCGCA
GGCTGCAACGCCTGATCGACCCGCCGCAGTCACCGCAGCTGTGCCACGCGCTGTGCTTCGTGGACCTGGATCACTTCAAA
CTGGTCAACGACACTTTCGGGCATGCGGTGGGCGACAAGTTCCTGTGCCACTTCGCCGACGTGATCACCATGCAGCTGCG
CCCCGGCGACTGGCTGGGGCGGCTGGGCGGCGACGAGTTCGCGATCCTGCTGGCCAACACCGACCTGGCGCATGCGCACA
CGCTGCTGGAGCGGATGCATGGCGTGCTTGGGCAGCCGTGGAGCCACCAGGGCGGCCGGCCGCTGACCCCCAGCTGCAGT
TTCGGCGTGGTGGAGATCCGCCAGGGGGCCGACGACGTCAACCTGCTGATGACCGCGGCCGACCTGGCCTGCCATGCGGC
CAAGGAAGAGGGCCGCAACCGCATCCGCAGTTTCGGCGAGACCGATCTGGCGATGGCGCGGCGGCGCCACGACGGCGGCT
GGATCAGCGCGGTGCAGCAGGCGATCGCCGAGGACCGGCTGCTGCTGTACGCGCAGAAGATCCAGGTGCTCAGCGACCCG
GGGCGTGTGCAATACGAAGTGCTGGTGCGCATGCGCACGCGCGACGGGCGCGTGCTCAGCCCTGGCGAATTCCTGCCGGC
GGTGGAACGTTACGGCCTGGGCCGCATGGTGGATGCGCACGTGCTGGAAACCCTTTGTGCGCAGCTCTCTGCCAATCCGG
CGCATGTGGCGAGCCTGGACCTGTGCCATGTAAACCTGTCCGCGCAGTCGATCGCGCAACGCGACTTCCTGGATTTTGTG
TGCGCCTTGTTCGAGCGCTACCCGGCGCTGGTGGCCAAGCTGTGCCTGGAAATCACCGAAACCGCAGTGATCGGCGATCT
GGAGCACGCGCAGCGGTTCGTGCAGAGCGTGCGTGCGCGCGGCTGCCATGTGGCGCTGGATGATTTTGGCAGCGGCCTGG
CTTCGTTCGGTTATCTCAAGCAATTTACGGTGGATGTGCTCAAGATCGACTGCGGCTTCGTGCGCAATTACGCGCATGAC
GCCGTGGACCGCGCCACCGTGCATTCGATCGCGCAGGTAGGGCTGGCGCTGGGGATCGAGGTGGTGGCCGAGGGCGTGGA
ATCGGAGGCCGACATCGCCGGCCTGCGCGAGGCCGGGGTCGGCCAGGTGCAAGGGTTTAGCCTGCACAGGCCATGCCCGC
TGGACGACCTGCTGCATGTGTCGCTACCCAGCCTGGCTGCCTCCTGA

Upstream 100 bases:

>100_bases
CTGCCTTCAGGCGCCCACTGGGCGCCTGAGACGCATTGGGCAGCGGTGGACGGTGATGGCGAAAGCGCAGGCGGCACGAG
GCACAGGTGGCGGCGGGACC

Downstream 100 bases:

>100_bases
GCGGCCCTGACGCACGCAATGGCCCGCGCGGCGCCGCAATCGCCGATAATCCGCCGATGACGACCCGACTCAACAAACAT
ATCGCCGAAACCGGCTTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 788; Mature: 788

Protein sequence:

>788_residues
MQTVRGWLTLPLALLIVLTGCMAVLSALVIEVQAGATSWIIGESHWSKAQQESVYWLERYLGSADPADLQAACRALEVPL
GDRAARLAVDASPIDWAEVYAGLAAGRNAREDMPQMVRLYRYGQRLPYLGSAIALWKHTDGDILHLSLLADRAASAQATG
TPDARALQSLRAELHLLDGRMRRDAAQFLTLLTRCARMLHDVMVTCSLATLLLVLSTCVLAIRRTRDYLMSHEGRFRTAF
QHAALGMVKFDLSGRVLDANASLANILQYPPEALQACTLAEVMHPDDIVLDSRGLIDWPRLMQAGELRFLRSDGGVLWGR
WSASLVEPGPQEPSLVLAVIEDVSQAHELADEVAYHARHDALTGLINRREIERRLQRLIDPPQSPQLCHALCFVDLDHFK
LVNDTFGHAVGDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLANTDLAHAHTLLERMHGVLGQPWSHQGGRPLTPSCS
FGVVEIRQGADDVNLLMTAADLACHAAKEEGRNRIRSFGETDLAMARRRHDGGWISAVQQAIAEDRLLLYAQKIQVLSDP
GRVQYEVLVRMRTRDGRVLSPGEFLPAVERYGLGRMVDAHVLETLCAQLSANPAHVASLDLCHVNLSAQSIAQRDFLDFV
CALFERYPALVAKLCLEITETAVIGDLEHAQRFVQSVRARGCHVALDDFGSGLASFGYLKQFTVDVLKIDCGFVRNYAHD
AVDRATVHSIAQVGLALGIEVVAEGVESEADIAGLREAGVGQVQGFSLHRPCPLDDLLHVSLPSLAAS

Sequences:

>Translated_788_residues
MQTVRGWLTLPLALLIVLTGCMAVLSALVIEVQAGATSWIIGESHWSKAQQESVYWLERYLGSADPADLQAACRALEVPL
GDRAARLAVDASPIDWAEVYAGLAAGRNAREDMPQMVRLYRYGQRLPYLGSAIALWKHTDGDILHLSLLADRAASAQATG
TPDARALQSLRAELHLLDGRMRRDAAQFLTLLTRCARMLHDVMVTCSLATLLLVLSTCVLAIRRTRDYLMSHEGRFRTAF
QHAALGMVKFDLSGRVLDANASLANILQYPPEALQACTLAEVMHPDDIVLDSRGLIDWPRLMQAGELRFLRSDGGVLWGR
WSASLVEPGPQEPSLVLAVIEDVSQAHELADEVAYHARHDALTGLINRREIERRLQRLIDPPQSPQLCHALCFVDLDHFK
LVNDTFGHAVGDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLANTDLAHAHTLLERMHGVLGQPWSHQGGRPLTPSCS
FGVVEIRQGADDVNLLMTAADLACHAAKEEGRNRIRSFGETDLAMARRRHDGGWISAVQQAIAEDRLLLYAQKIQVLSDP
GRVQYEVLVRMRTRDGRVLSPGEFLPAVERYGLGRMVDAHVLETLCAQLSANPAHVASLDLCHVNLSAQSIAQRDFLDFV
CALFERYPALVAKLCLEITETAVIGDLEHAQRFVQSVRARGCHVALDDFGSGLASFGYLKQFTVDVLKIDCGFVRNYAHD
AVDRATVHSIAQVGLALGIEVVAEGVESEADIAGLREAGVGQVQGFSLHRPCPLDDLLHVSLPSLAAS
>Mature_788_residues
MQTVRGWLTLPLALLIVLTGCMAVLSALVIEVQAGATSWIIGESHWSKAQQESVYWLERYLGSADPADLQAACRALEVPL
GDRAARLAVDASPIDWAEVYAGLAAGRNAREDMPQMVRLYRYGQRLPYLGSAIALWKHTDGDILHLSLLADRAASAQATG
TPDARALQSLRAELHLLDGRMRRDAAQFLTLLTRCARMLHDVMVTCSLATLLLVLSTCVLAIRRTRDYLMSHEGRFRTAF
QHAALGMVKFDLSGRVLDANASLANILQYPPEALQACTLAEVMHPDDIVLDSRGLIDWPRLMQAGELRFLRSDGGVLWGR
WSASLVEPGPQEPSLVLAVIEDVSQAHELADEVAYHARHDALTGLINRREIERRLQRLIDPPQSPQLCHALCFVDLDHFK
LVNDTFGHAVGDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLANTDLAHAHTLLERMHGVLGQPWSHQGGRPLTPSCS
FGVVEIRQGADDVNLLMTAADLACHAAKEEGRNRIRSFGETDLAMARRRHDGGWISAVQQAIAEDRLLLYAQKIQVLSDP
GRVQYEVLVRMRTRDGRVLSPGEFLPAVERYGLGRMVDAHVLETLCAQLSANPAHVASLDLCHVNLSAQSIAQRDFLDFV
CALFERYPALVAKLCLEITETAVIGDLEHAQRFVQSVRARGCHVALDDFGSGLASFGYLKQFTVDVLKIDCGFVRNYAHD
AVDRATVHSIAQVGLALGIEVVAEGVESEADIAGLREAGVGQVQGFSLHRPCPLDDLLHVSLPSLAAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=434, Percent_Identity=28.3410138248848, Blast_Score=162, Evalue=6e-41,
Organism=Escherichia coli, GI1788849, Length=428, Percent_Identity=28.0373831775701, Blast_Score=158, Evalue=1e-39,
Organism=Escherichia coli, GI1788381, Length=447, Percent_Identity=28.8590604026846, Blast_Score=149, Evalue=5e-37,
Organism=Escherichia coli, GI87082096, Length=242, Percent_Identity=32.2314049586777, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI87081921, Length=420, Percent_Identity=25, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI226510982, Length=391, Percent_Identity=29.4117647058824, Blast_Score=123, Evalue=5e-29,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=28.3898305084746, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI87081881, Length=318, Percent_Identity=26.7295597484277, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1788085, Length=179, Percent_Identity=33.5195530726257, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI87081743, Length=248, Percent_Identity=29.8387096774194, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1788502, Length=214, Percent_Identity=29.9065420560748, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=35.4285714285714, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI1786584, Length=179, Percent_Identity=33.5195530726257, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI87081980, Length=215, Percent_Identity=32.093023255814, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=34.1614906832298, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI87081977, Length=151, Percent_Identity=36.4238410596026, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1789650, Length=463, Percent_Identity=23.5421166306695, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI87081845, Length=217, Percent_Identity=26.7281105990783, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1786507, Length=215, Percent_Identity=29.3023255813954, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787802, Length=187, Percent_Identity=31.5508021390374, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=32.3529411764706, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787055, Length=244, Percent_Identity=25.4098360655738, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081974, Length=108, Percent_Identity=38.8888888888889, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=129, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 86483; Mature: 86483

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTVRGWLTLPLALLIVLTGCMAVLSALVIEVQAGATSWIIGESHWSKAQQESVYWLERY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHH
LGSADPADLQAACRALEVPLGDRAARLAVDASPIDWAEVYAGLAAGRNAREDMPQMVRLY
HCCCCCHHHHHHHHHHCCCCCCCHHEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
RYGQRLPYLGSAIALWKHTDGDILHLSLLADRAASAQATGTPDARALQSLRAELHLLDGR
HHCCCCCCCCCHHEEEECCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
MRRDAAQFLTLLTRCARMLHDVMVTCSLATLLLVLSTCVLAIRRTRDYLMSHEGRFRTAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QHAALGMVKFDLSGRVLDANASLANILQYPPEALQACTLAEVMHPDDIVLDSRGLIDWPR
HHHHHCEEEEECCCEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHH
LMQAGELRFLRSDGGVLWGRWSASLVEPGPQEPSLVLAVIEDVSQAHELADEVAYHARHD
HHHCCCEEEEECCCCEEEECCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTGLINRREIERRLQRLIDPPQSPQLCHALCFVDLDHFKLVNDTFGHAVGDKFLCHFAD
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VITMQLRPGDWLGRLGGDEFAILLANTDLAHAHTLLERMHGVLGQPWSHQGGRPLTPSCS
HHHEEECCCHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
FGVVEIRQGADDVNLLMTAADLACHAAKEEGRNRIRSFGETDLAMARRRHDGGWISAVQQ
CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH
AIAEDRLLLYAQKIQVLSDPGRVQYEVLVRMRTRDGRVLSPGEFLPAVERYGLGRMVDAH
HHHHHHHHHHHHHHHHHCCCCCEEEEHHEEEECCCCCEECCHHHHHHHHHCCCCHHHHHH
VLETLCAQLSANPAHVASLDLCHVNLSAQSIAQRDFLDFVCALFERYPALVAKLCLEITE
HHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAVIGDLEHAQRFVQSVRARGCHVALDDFGSGLASFGYLKQFTVDVLKIDCGFVRNYAHD
HHHHCCHHHHHHHHHHHHHCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVDRATVHSIAQVGLALGIEVVAEGVESEADIAGLREAGVGQVQGFSLHRPCPLDDLLHV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
SLPSLAAS
CCHHHCCC
>Mature Secondary Structure
MQTVRGWLTLPLALLIVLTGCMAVLSALVIEVQAGATSWIIGESHWSKAQQESVYWLERY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHH
LGSADPADLQAACRALEVPLGDRAARLAVDASPIDWAEVYAGLAAGRNAREDMPQMVRLY
HCCCCCHHHHHHHHHHCCCCCCCHHEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
RYGQRLPYLGSAIALWKHTDGDILHLSLLADRAASAQATGTPDARALQSLRAELHLLDGR
HHCCCCCCCCCHHEEEECCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
MRRDAAQFLTLLTRCARMLHDVMVTCSLATLLLVLSTCVLAIRRTRDYLMSHEGRFRTAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QHAALGMVKFDLSGRVLDANASLANILQYPPEALQACTLAEVMHPDDIVLDSRGLIDWPR
HHHHHCEEEEECCCEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHH
LMQAGELRFLRSDGGVLWGRWSASLVEPGPQEPSLVLAVIEDVSQAHELADEVAYHARHD
HHHCCCEEEEECCCCEEEECCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTGLINRREIERRLQRLIDPPQSPQLCHALCFVDLDHFKLVNDTFGHAVGDKFLCHFAD
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VITMQLRPGDWLGRLGGDEFAILLANTDLAHAHTLLERMHGVLGQPWSHQGGRPLTPSCS
HHHEEECCCHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
FGVVEIRQGADDVNLLMTAADLACHAAKEEGRNRIRSFGETDLAMARRRHDGGWISAVQQ
CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH
AIAEDRLLLYAQKIQVLSDPGRVQYEVLVRMRTRDGRVLSPGEFLPAVERYGLGRMVDAH
HHHHHHHHHHHHHHHHHCCCCCEEEEHHEEEECCCCCEECCHHHHHHHHHCCCCHHHHHH
VLETLCAQLSANPAHVASLDLCHVNLSAQSIAQRDFLDFVCALFERYPALVAKLCLEITE
HHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAVIGDLEHAQRFVQSVRARGCHVALDDFGSGLASFGYLKQFTVDVLKIDCGFVRNYAHD
HHHHCCHHHHHHHHHHHHHCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVDRATVHSIAQVGLALGIEVVAEGVESEADIAGLREAGVGQVQGFSLHRPCPLDDLLHV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
SLPSLAAS
CCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]