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The map label for this gene is ycjZ [C]

Identifier: 66767763

GI number: 66767763

Start: 1735330

End: 1736244

Strand: Reverse

Name: ycjZ [C]

Synonym: XC_1437

Alternate gene names: 66767763

Gene position: 1736244-1735330 (Counterclockwise)

Preceding gene: 66767765

Following gene: 66767757

Centisome position: 33.72

GC content: 66.23

Gene sequence:

>915_bases
GTGGTGTCGGCAAGCATGGCTCGGGAAAACCTCAATGACCTGCAGGTGTTTGTCACCGTGGCACGCGAAGGCAGCTTCAC
GCGCGCCGCAGCGCAGCTGGGAGTCTCGCAATCGGCGCTGAGCCATACCGTGCGTGCGCTGGAAACCCGGCTGGGGATTC
GCCTGCTCACCCGCACCACGCGCAGCGTCTCGATGACCGAAGCGGGCATGCGTTTGTTCGACACGGTGGCGCCACGGCTT
GAGGAGATCGACCAGGAGTTGTCGGCACTGACTGCGTTCCGCGACAAGCCTGCCGGCACCATCCGCATCACCACCGCCGG
CCACGCCGCCGATGCCTATCTGTGGCCGGCATTGTCGAAGGTGCTACCCGACTACCCCGACCTCAAGGTGGAGATCACCA
TCGATTACGGCCTGGCCGACATCGTGGCCGAGCGCTACGACATCGGCATCCGGCTCGGCGACCAGGTGGCCAAGGACATG
ATCGCGGTGCCGATCAGCCCACGCCAGCGCATGGCGGTGGTGGCGGCGCCCAGCTACTTCGTGCATCACACCATTCCCGC
AGTGCCGGCCGAGCTGGCGCAGCACAACTGCATCAGCTTGCGCCTGCCCACGCATGGCGGCCTGCTGCCGTGGGATTTCG
AAAAAGACGGACGCGAGCAGAAAGTGCGCGTGGATGGGCAATGGACGTTCAACGGAAGCAGCGCCATGTTGCGCGCGGCA
CTGGCCGGCGCGGGCCTGGCCTTCCTGCCGGAAACCATGGTGCTGGACCACATCGCCGCCGGCCGCCTGCGCCGCGTGCT
GGACGACTGGTGCGACCCGTTCGATGGCTATTACGCCTATTACCCAAGCCGGCGCCAGTCTTCCGCCGCGCTCAAGGTGG
TGATCGACGCGCTGCGCCATGACCTGGTGCGGTAG

Upstream 100 bases:

>100_bases
GGCCGCATGCTCCTAGAAACACAGCGCATCAATGCATCTTGATTGAAGCCGGGAGGCGCCATCGCGCATGATGCAGCGGC
ATGGATTTCATGTTTGATGT

Downstream 100 bases:

>100_bases
CGCACCGTAGGAGCGCGCTTGCGCGCGGTGGGGCTTTATCGGTAACGCCACATCGCGCGCGAGCGCGCTCCTACGGGACC
TGCAGTACTGCCGCTATGTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MVSASMARENLNDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSMTEAGMRLFDTVAPRL
EEIDQELSALTAFRDKPAGTIRITTAGHAADAYLWPALSKVLPDYPDLKVEITIDYGLADIVAERYDIGIRLGDQVAKDM
IAVPISPRQRMAVVAAPSYFVHHTIPAVPAELAQHNCISLRLPTHGGLLPWDFEKDGREQKVRVDGQWTFNGSSAMLRAA
LAGAGLAFLPETMVLDHIAAGRLRRVLDDWCDPFDGYYAYYPSRRQSSAALKVVIDALRHDLVR

Sequences:

>Translated_304_residues
MVSASMARENLNDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSMTEAGMRLFDTVAPRL
EEIDQELSALTAFRDKPAGTIRITTAGHAADAYLWPALSKVLPDYPDLKVEITIDYGLADIVAERYDIGIRLGDQVAKDM
IAVPISPRQRMAVVAAPSYFVHHTIPAVPAELAQHNCISLRLPTHGGLLPWDFEKDGREQKVRVDGQWTFNGSSAMLRAA
LAGAGLAFLPETMVLDHIAAGRLRRVLDDWCDPFDGYYAYYPSRRQSSAALKVVIDALRHDLVR
>Mature_304_residues
MVSASMARENLNDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSMTEAGMRLFDTVAPRL
EEIDQELSALTAFRDKPAGTIRITTAGHAADAYLWPALSKVLPDYPDLKVEITIDYGLADIVAERYDIGIRLGDQVAKDM
IAVPISPRQRMAVVAAPSYFVHHTIPAVPAELAQHNCISLRLPTHGGLLPWDFEKDGREQKVRVDGQWTFNGSSAMLRAA
LAGAGLAFLPETMVLDHIAAGRLRRVLDDWCDPFDGYYAYYPSRRQSSAALKVVIDALRHDLVR

Specific function: May have a role in the regulation of oprD expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=295, Percent_Identity=46.4406779661017, Blast_Score=272, Evalue=3e-74,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=40.0684931506849, Blast_Score=218, Evalue=3e-58,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=30.7958477508651, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=31.2080536912752, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=28.719723183391, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=30.3448275862069, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=30.3030303030303, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1786448, Length=299, Percent_Identity=24.4147157190635, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789173, Length=277, Percent_Identity=28.158844765343, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788748, Length=184, Percent_Identity=34.2391304347826, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI145693105, Length=161, Percent_Identity=25.4658385093168, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788706, Length=144, Percent_Identity=29.1666666666667, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787879, Length=147, Percent_Identity=34.6938775510204, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI157672245, Length=165, Percent_Identity=28.4848484848485, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788481, Length=272, Percent_Identity=25.7352941176471, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1786508, Length=61, Percent_Identity=47.5409836065574, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367136, Length=123, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33497; Mature: 33497

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSASMARENLNDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTT
CCCHHHHHCCCCCEEEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
RSVSMTEAGMRLFDTVAPRLEEIDQELSALTAFRDKPAGTIRITTAGHAADAYLWPALSK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
VLPDYPDLKVEITIDYGLADIVAERYDIGIRLGDQVAKDMIAVPISPRQRMAVVAAPSYF
HCCCCCCCEEEEEEECCHHHHHHHHHHCCEEECHHHHHHHEECCCCCCCCEEEEECCCHH
VHHTIPAVPAELAQHNCISLRLPTHGGLLPWDFEKDGREQKVRVDGQWTFNGSSAMLRAA
HHHCCCCCHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCEEEECCHHHHHHHH
LAGAGLAFLPETMVLDHIAAGRLRRVLDDWCDPFDGYYAYYPSRRQSSAALKVVIDALRH
HHCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
DLVR
HHCC
>Mature Secondary Structure
MVSASMARENLNDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTT
CCCHHHHHCCCCCEEEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
RSVSMTEAGMRLFDTVAPRLEEIDQELSALTAFRDKPAGTIRITTAGHAADAYLWPALSK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
VLPDYPDLKVEITIDYGLADIVAERYDIGIRLGDQVAKDMIAVPISPRQRMAVVAAPSYF
HCCCCCCCEEEEEEECCHHHHHHHHHHCCEEECHHHHHHHEECCCCCCCCEEEEECCCHH
VHHTIPAVPAELAQHNCISLRLPTHGGLLPWDFEKDGREQKVRVDGQWTFNGSSAMLRAA
HHHCCCCCHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCEEEECCHHHHHHHH
LAGAGLAFLPETMVLDHIAAGRLRRVLDDWCDPFDGYYAYYPSRRQSSAALKVVIDALRH
HHCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
DLVR
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043; 1427017 [H]