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The map label for this gene is ycdC [C]

Identifier: 66767757

GI number: 66767757

Start: 1726452

End: 1727069

Strand: Reverse

Name: ycdC [C]

Synonym: XC_1431

Alternate gene names: 66767757

Gene position: 1727069-1726452 (Counterclockwise)

Preceding gene: 66767763

Following gene: 66767748

Centisome position: 33.54

GC content: 61.97

Gene sequence:

>618_bases
ATGCGGGTCAGAACCGAAGAAAAGCGCGACACCATCGTTCAGGCGGCCAGCGAGGTCTTCCTCGAGCTGGGCTTCGAAGG
CGCGTCGATGTCGCAGATCGCTGCCCGTGTCGGCGGCTCAAAGCGCACGCTGTACGGCTATTTCGGCTCGAAGGAAGAGC
TGTTTGTGGCGGTGGCCAAGGACATGTCCGACCGCTATTTCGATCCGCTACTGGATGCACTTTCGCGGAGCAGCGGCCCC
ATTGCCGACGCCCTGCAGCGCTTCGGAGAGGACGTCCTCACCTTCCTGTGCGCACCGCCCAATATCACCAGTTGGCAGAC
CATCATCGGGGTATCCGGCAGATCAGACGTCGGCGCGCTGTTTTTCAGCGCAGGTCAAGAAGAAGGCCTGAAGCGCTTCG
CCGAATACCTGCAGACACAGGTGGACTGCGGCCAGCTCCGTTGCGACGACACTATGCTTGCCGCCCAACAGTTCGCCGCC
CTAGTCGAAGCCGAAACCCTGATGCCCTGCCTGTTCGGCGCACTCAAGAACCCATCGCCGGAGTATCTGCGCGACGCTAC
CCGGCGCGCGGTGGAACTGTTTCTGGTTGGGTATGCGTGTAAGCCAGCGGCGGCTTGA

Upstream 100 bases:

>100_bases
TAAATCTAAACGGTACGGTTCGGTATCCTAATAAGCTCATCCGTGGGCGTCAAGCATTTCTGCCCAGTTGGTATACTTAA
GAGCCCCTAGGAGCACCGCG

Downstream 100 bases:

>100_bases
ATGTGGTTGCGGATGCGGGGAGGTGGCGTGGTGACTGACGTGCTGCGGTGATGAGCGGCTTCGCAGGTGTTGGAACGCCC
GACCACTGAAGTGCGCTGGG

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcription Regulator Protein; Transcriptional Regulator TetR Family Protein; TetR-Family Transcriptional Regulator; Transcription Regulator Protein TetR Family; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulator Protein Tetr Family; TetR-Family Trancriptional Regulatory Protein; TetR-Like Virulence Regulator; TetR Family Transcriptional RegulatoR; Regulatory Protein Tetr; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; TetR-Type Transcriptional Regulator; Bacterial Regulatory Protein; Transcriptional Regulator TetR/AcrR Family; Transcriptional Regulator Protein; Transcription Regulator Protein Tetr Family; Transcriptional Regulator TetR

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MRVRTEEKRDTIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFGSKEELFVAVAKDMSDRYFDPLLDALSRSSGP
IADALQRFGEDVLTFLCAPPNITSWQTIIGVSGRSDVGALFFSAGQEEGLKRFAEYLQTQVDCGQLRCDDTMLAAQQFAA
LVEAETLMPCLFGALKNPSPEYLRDATRRAVELFLVGYACKPAAA

Sequences:

>Translated_205_residues
MRVRTEEKRDTIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFGSKEELFVAVAKDMSDRYFDPLLDALSRSSGP
IADALQRFGEDVLTFLCAPPNITSWQTIIGVSGRSDVGALFFSAGQEEGLKRFAEYLQTQVDCGQLRCDDTMLAAQQFAA
LVEAETLMPCLFGALKNPSPEYLRDATRRAVELFLVGYACKPAAA
>Mature_205_residues
MRVRTEEKRDTIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFGSKEELFVAVAKDMSDRYFDPLLDALSRSSGP
IADALQRFGEDVLTFLCAPPNITSWQTIIGVSGRSDVGALFFSAGQEEGLKRFAEYLQTQVDCGQLRCDDTMLAAQQFAA
LVEAETLMPCLFGALKNPSPEYLRDATRRAVELFLVGYACKPAAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22405; Mature: 22405

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVRTEEKRDTIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFGSKEELFVAVAK
CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
DMSDRYFDPLLDALSRSSGPIADALQRFGEDVLTFLCAPPNITSWQTIIGVSGRSDVGAL
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHEECCCCCHHHHH
FFSAGQEEGLKRFAEYLQTQVDCGQLRCDDTMLAAQQFAALVEAETLMPCLFGALKNPSP
HHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
EYLRDATRRAVELFLVGYACKPAAA
HHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRVRTEEKRDTIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFGSKEELFVAVAK
CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
DMSDRYFDPLLDALSRSSGPIADALQRFGEDVLTFLCAPPNITSWQTIIGVSGRSDVGAL
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHEECCCCCHHHHH
FFSAGQEEGLKRFAEYLQTQVDCGQLRCDDTMLAAQQFAALVEAETLMPCLFGALKNPSP
HHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
EYLRDATRRAVELFLVGYACKPAAA
HHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA