| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is creB [H]
Identifier: 66767745
GI number: 66767745
Start: 1714806
End: 1715501
Strand: Direct
Name: creB [H]
Synonym: XC_1419
Alternate gene names: 66767745
Gene position: 1714806-1715501 (Clockwise)
Preceding gene: 66767734
Following gene: 66767746
Centisome position: 33.31
GC content: 70.55
Gene sequence:
>696_bases ATGTCCGAGACCCCCGCCCGTGTCCTTGTCGTCGAGGACGAAACCGCCATTGCCGACACCGTGCTGTACGCCCTGCGCAG CGAGGGCTACGTGCCCGAGCACTGCCTGCTGGGGCGCGAGGCGCTGGAGCGGCTGCGCAACGATCCTGCCGACCTGGTGG TGCTGGACGTGGGCCTGCCGGATATCAACGGCTTCGAGGTCTGCCGCACGCTGCGCAGTTTCAGCGAGGTGCCGGTGATC TTCCTGACCGCACGCAACGACGAGATCGACCGCGTGCTGGGCCTGGAACTCGGTGCCGACGACTACATGGCCAAGCCGTT TTCGCCGCGCGAGCTGGTGGCGCGCGTGCGCGCACGGCTGCGCCGGCGCAGCGTGGCCGTGGCCCAGGCCGAACCGGGCT GGCAGCCGCACGGCGCGTTCGCGATTGATCGCGACGGCAGTCGCATCCGCTACGGCGAGACGCTGTTGCCGCTGACGCGC TACGAATACGCGCTGCTGGCCGCGCTGCTGCAACGGCCCGGCGCCATCCTCAGCCGCACCCAGCTGATGGACCGCGGCTG GGATGCCAGCGCCGACAGCGCCGACCGCACCGTGGATACCCATATCAAGACGCTGCGCGCCAAGCTGCGCCAGGCCGGCG TGCCGGCCGACCCGATCCGCACCCACCGTGGCCTTGGCTACGCGCTGGAGGTCTGA
Upstream 100 bases:
>100_bases AGGTGCAGCCAGTGTTGTGTGGTCGATGATGGCCCGCAGCGGCCGTGCACGGTGGCCGGCGTGCTATTGGCCGCGCCGGC ATGCGGCTATGCTGCGCGCC
Downstream 100 bases:
>100_bases GGATGGGTGCCGTATTTCAGAAGCCGGCGGTCGGGGTGGTCGAGCGTGCTGGTTTGCTTGGTCGGCGTGGGCTGACAGAA GTGAACGGCCTGGCGGTCGG
Product: DNA-binding response regulator CreB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 231; Mature: 230
Protein sequence:
>231_residues MSETPARVLVVEDETAIADTVLYALRSEGYVPEHCLLGREALERLRNDPADLVVLDVGLPDINGFEVCRTLRSFSEVPVI FLTARNDEIDRVLGLELGADDYMAKPFSPRELVARVRARLRRRSVAVAQAEPGWQPHGAFAIDRDGSRIRYGETLLPLTR YEYALLAALLQRPGAILSRTQLMDRGWDASADSADRTVDTHIKTLRAKLRQAGVPADPIRTHRGLGYALEV
Sequences:
>Translated_231_residues MSETPARVLVVEDETAIADTVLYALRSEGYVPEHCLLGREALERLRNDPADLVVLDVGLPDINGFEVCRTLRSFSEVPVI FLTARNDEIDRVLGLELGADDYMAKPFSPRELVARVRARLRRRSVAVAQAEPGWQPHGAFAIDRDGSRIRYGETLLPLTR YEYALLAALLQRPGAILSRTQLMDRGWDASADSADRTVDTHIKTLRAKLRQAGVPADPIRTHRGLGYALEV >Mature_230_residues SETPARVLVVEDETAIADTVLYALRSEGYVPEHCLLGREALERLRNDPADLVVLDVGLPDINGFEVCRTLRSFSEVPVIF LTARNDEIDRVLGLELGADDYMAKPFSPRELVARVRARLRRRSVAVAQAEPGWQPHGAFAIDRDGSRIRYGETLLPLTRY EYALLAALLQRPGAILSRTQLMDRGWDASADSADRTVDTHIKTLRAKLRQAGVPADPIRTHRGLGYALEV
Specific function: Member of the two-component regulatory system CreC/CreB involved in catabolic regulation [H]
COG id: COG0745
COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1790860, Length=223, Percent_Identity=52.0179372197309, Blast_Score=218, Evalue=2e-58, Organism=Escherichia coli, GI1788394, Length=234, Percent_Identity=39.3162393162393, Blast_Score=163, Evalue=9e-42, Organism=Escherichia coli, GI1786599, Length=224, Percent_Identity=38.3928571428571, Blast_Score=139, Evalue=1e-34, Organism=Escherichia coli, GI87082012, Length=223, Percent_Identity=36.7713004484305, Blast_Score=131, Evalue=4e-32, Organism=Escherichia coli, GI1786784, Length=226, Percent_Identity=35.3982300884956, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1787229, Length=237, Percent_Identity=37.9746835443038, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1786911, Length=226, Percent_Identity=40.7079646017699, Blast_Score=128, Evalue=4e-31, Organism=Escherichia coli, GI1789809, Length=231, Percent_Identity=36.7965367965368, Blast_Score=125, Evalue=2e-30, Organism=Escherichia coli, GI1790552, Length=224, Percent_Identity=35.7142857142857, Blast_Score=120, Evalue=9e-29, Organism=Escherichia coli, GI1790863, Length=238, Percent_Identity=33.6134453781513, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1789402, Length=226, Percent_Identity=36.283185840708, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI2367329, Length=182, Percent_Identity=40.6593406593407, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1787375, Length=226, Percent_Identity=31.858407079646, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI145693140, Length=198, Percent_Identity=28.7878787878788, Blast_Score=81, Evalue=6e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 25714; Mature: 25582
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETPARVLVVEDETAIADTVLYALRSEGYVPEHCLLGREALERLRNDPADLVVLDVGLP CCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC DINGFEVCRTLRSFSEVPVIFLTARNDEIDRVLGLELGADDYMAKPFSPRELVARVRARL CCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCEECCCHHHCCCCCHHHHHHHHHHHH RRRSVAVAQAEPGWQPHGAFAIDRDGSRIRYGETLLPLTRYEYALLAALLQRPGAILSRT HHHHHHEEECCCCCCCCCCEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHH QLMDRGWDASADSADRTVDTHIKTLRAKLRQAGVPADPIRTHRGLGYALEV HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEECC >Mature Secondary Structure SETPARVLVVEDETAIADTVLYALRSEGYVPEHCLLGREALERLRNDPADLVVLDVGLP CCCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC DINGFEVCRTLRSFSEVPVIFLTARNDEIDRVLGLELGADDYMAKPFSPRELVARVRARL CCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCEECCCHHHCCCCCHHHHHHHHHHHH RRRSVAVAQAEPGWQPHGAFAIDRDGSRIRYGETLLPLTRYEYALLAALLQRPGAILSRT HHHHHHEEECCCCCCCCCCEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHH QLMDRGWDASADSADRTVDTHIKTLRAKLRQAGVPADPIRTHRGLGYALEV HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3531171; 7610040; 9278503 [H]