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The map label for this gene is sufD [H]

Identifier: 66767672

GI number: 66767672

Start: 1631575

End: 1632837

Strand: Reverse

Name: sufD [H]

Synonym: XC_1345

Alternate gene names: 66767672

Gene position: 1632837-1631575 (Counterclockwise)

Preceding gene: 66767673

Following gene: 66767671

Centisome position: 31.71

GC content: 67.85

Gene sequence:

>1263_bases
ATGAGTGCCTTGTTGGAATCCCTTGCCAGCGGGTTTAGCGGCAATGCTGCACGGCGCGCCGAACTCGACGCGGCCTTGCA
GACCGGCCTGCCCGGCCCGCGTGCCGAAGCCTGGAAATACACCTCGCTGCGCCAGCTGGAACGCCGCAGCTTCCAGCCTG
CACCGTTGGTGCCGGCGCTGATCGATGCCGCGGTGCTGGATGAGATCCCCACCCCGCGCCTGGTGTTCGTCAATGGCCGT
GCGTCGGATGCGCTGAGCGATCTGTCCGAACTTCCGGCAGGCGTGCAGGTGCAGACGCTGTCGTCCGCACTAGTTGGCGA
TGAATCGGCGCAGCAGCTGCTTGGCCGCCGCTTCGAGCGCAGCGATGAAATTTTCGCGCGTCTGAATGCCGCGCTGGCCG
ATGAAGGCGCGCTGGTGCGCGTGGACGCAGGCGTCAAGGTGGCGCTGCCGCTGCAGCTGGTGTTCGTTAGCGTGGGCGGC
GAGCACGACCTGGCCTGGCACCACCGCCATCTGATCGAATTGCGTGCCGACGCCGCGCTCGGCGTGGTCGAGCACCACCT
GCACGTAGGCGATGCAGCGCATCTGGACAACAGCGTGATGCATGTCCATCTGGCCCAGGACGCCGTGCTTTCGCACGCAC
GCGTGCAGGCCGATAGCGCACGCGCCACCGCGTTCGCGCGGACCGATGCGGTGCTGGCGCGCAATGCGCAGTACCAGCGT
GTGGACCTGGAGCTGGGCGCAGGCCTGTCCCGGCACGAACTCAATGCGCGGCTGGAAGGCGACAATGCACGGCTCACCGC
CAATGGCGTGCTGCTGGGCAATGGCCGCCGGCATGTGGATACCCGCCTGGGCATCGAGCACATCGCCCGCGACACCGCCT
GCGAGCTGGTCTGGCGCGGCGTCGGCGCCGACCGCAGCCGCGTGGTGTTCCACGGCGGCATCCATATCCGCCAGGGCGCC
GATGGCACCGATGCACGTTTGTCGAACAAGAACCTGTTGCTCTCGGACAACGCCGAAATCGACACCCAGCCGGTGCTGGT
GATCGACGCGGACGAAGTGCAGGCCGCGCACGGTGCCACCGTGGGTCAGCTCGACGACAACGCGCTGTTCTACCTGCGCT
CGCGCGGGTTGCCGCAGCAGCAGGCGCAGCGCTTGCTCAGCGCCGCGTTCTGCCATGAGCCGTTGCGCGCACTGCCGTCG
CCATTGCGCGATCTGCTGGCCGTGCAGCTGGACCGCGCCCTGAATTCGGCGGGCGTGGCATGA

Upstream 100 bases:

>100_bases
GGCGCATCGTGCAGAGTGGCGGCCCGGAGCTGGCGCTGGAGTTGGAAAAACACGGCTACCACTTCCTGAAGGACCGTGTG
GTGCCGGAGGCCGCCGCCTG

Downstream 100 bases:

>100_bases
ACGCCTCCGTCGCCGCCACTCCGGCACCGGACTGGGAGCGCGTACGCTCCGATTTCCCGCTGCTGATGCGGCAGGTGCAC
GGCAAGCCGCTGATCTATTT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MSALLESLASGFSGNAARRAELDAALQTGLPGPRAEAWKYTSLRQLERRSFQPAPLVPALIDAAVLDEIPTPRLVFVNGR
ASDALSDLSELPAGVQVQTLSSALVGDESAQQLLGRRFERSDEIFARLNAALADEGALVRVDAGVKVALPLQLVFVSVGG
EHDLAWHHRHLIELRADAALGVVEHHLHVGDAAHLDNSVMHVHLAQDAVLSHARVQADSARATAFARTDAVLARNAQYQR
VDLELGAGLSRHELNARLEGDNARLTANGVLLGNGRRHVDTRLGIEHIARDTACELVWRGVGADRSRVVFHGGIHIRQGA
DGTDARLSNKNLLLSDNAEIDTQPVLVIDADEVQAAHGATVGQLDDNALFYLRSRGLPQQQAQRLLSAAFCHEPLRALPS
PLRDLLAVQLDRALNSAGVA

Sequences:

>Translated_420_residues
MSALLESLASGFSGNAARRAELDAALQTGLPGPRAEAWKYTSLRQLERRSFQPAPLVPALIDAAVLDEIPTPRLVFVNGR
ASDALSDLSELPAGVQVQTLSSALVGDESAQQLLGRRFERSDEIFARLNAALADEGALVRVDAGVKVALPLQLVFVSVGG
EHDLAWHHRHLIELRADAALGVVEHHLHVGDAAHLDNSVMHVHLAQDAVLSHARVQADSARATAFARTDAVLARNAQYQR
VDLELGAGLSRHELNARLEGDNARLTANGVLLGNGRRHVDTRLGIEHIARDTACELVWRGVGADRSRVVFHGGIHIRQGA
DGTDARLSNKNLLLSDNAEIDTQPVLVIDADEVQAAHGATVGQLDDNALFYLRSRGLPQQQAQRLLSAAFCHEPLRALPS
PLRDLLAVQLDRALNSAGVA
>Mature_419_residues
SALLESLASGFSGNAARRAELDAALQTGLPGPRAEAWKYTSLRQLERRSFQPAPLVPALIDAAVLDEIPTPRLVFVNGRA
SDALSDLSELPAGVQVQTLSSALVGDESAQQLLGRRFERSDEIFARLNAALADEGALVRVDAGVKVALPLQLVFVSVGGE
HDLAWHHRHLIELRADAALGVVEHHLHVGDAAHLDNSVMHVHLAQDAVLSHARVQADSARATAFARTDAVLARNAQYQRV
DLELGAGLSRHELNARLEGDNARLTANGVLLGNGRRHVDTRLGIEHIARDTACELVWRGVGADRSRVVFHGGIHIRQGAD
GTDARLSNKNLLLSDNAEIDTQPVLVIDADEVQAAHGATVGQLDDNALFYLRSRGLPQQQAQRLLSAAFCHEPLRALPSP
LRDLLAVQLDRALNSAGVA

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=376, Percent_Identity=34.5744680851064, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI87081955, Length=319, Percent_Identity=23.1974921630094, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 45118; Mature: 44987

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALLESLASGFSGNAARRAELDAALQTGLPGPRAEAWKYTSLRQLERRSFQPAPLVPAL
CHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHH
IDAAVLDEIPTPRLVFVNGRASDALSDLSELPAGVQVQTLSSALVGDESAQQLLGRRFER
HHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCEEEHHHHHHHHCCHHHHHHHHHHHCC
SDEIFARLNAALADEGALVRVDAGVKVALPLQLVFVSVGGEHDLAWHHRHLIELRADAAL
HHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHCCHHH
GVVEHHLHVGDAAHLDNSVMHVHLAQDAVLSHARVQADSARATAFARTDAVLARNAQYQR
HHHHHHHCCCCHHHCCCCEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEE
VDLELGAGLSRHELNARLEGDNARLTANGVLLGNGRRHVDTRLGIEHIARDTACELVWRG
EEEHHCCCCCHHHCCCEEECCCCEEEECEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
VGADRSRVVFHGGIHIRQGADGTDARLSNKNLLLSDNAEIDTQPVLVIDADEVQAAHGAT
CCCCCCEEEEECCEEEECCCCCCCCEECCCCEEEECCCCCCCCCEEEEECHHHHHHCCCE
VGQLDDNALFYLRSRGLPQQQAQRLLSAAFCHEPLRALPSPLRDLLAVQLDRALNSAGVA
ECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SALLESLASGFSGNAARRAELDAALQTGLPGPRAEAWKYTSLRQLERRSFQPAPLVPAL
HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHH
IDAAVLDEIPTPRLVFVNGRASDALSDLSELPAGVQVQTLSSALVGDESAQQLLGRRFER
HHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCEEEHHHHHHHHCCHHHHHHHHHHHCC
SDEIFARLNAALADEGALVRVDAGVKVALPLQLVFVSVGGEHDLAWHHRHLIELRADAAL
HHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHCCHHH
GVVEHHLHVGDAAHLDNSVMHVHLAQDAVLSHARVQADSARATAFARTDAVLARNAQYQR
HHHHHHHCCCCHHHCCCCEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEE
VDLELGAGLSRHELNARLEGDNARLTANGVLLGNGRRHVDTRLGIEHIARDTACELVWRG
EEEHHCCCCCHHHCCCEEECCCCEEEECEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
VGADRSRVVFHGGIHIRQGADGTDARLSNKNLLLSDNAEIDTQPVLVIDADEVQAAHGAT
CCCCCCEEEEECCEEEECCCCCCCCEECCCCEEEECCCCCCCCCEEEEECHHHHHHCCCE
VGQLDDNALFYLRSRGLPQQQAQRLLSAAFCHEPLRALPSPLRDLLAVQLDRALNSAGVA
ECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]