Click here to switch to the map view.

The map label for this gene is yqfA [C]

Identifier: 66767575

GI number: 66767575

Start: 1527569

End: 1528213

Strand: Reverse

Name: yqfA [C]

Synonym: XC_1248

Alternate gene names: 66767575

Gene position: 1528213-1527569 (Counterclockwise)

Preceding gene: 66767576

Following gene: 66767574

Centisome position: 29.68

GC content: 62.64

Gene sequence:

>645_bases
ATGAATGCAGATGCCCCCCCCTCCACCGACCTGCGCGATGAAATCGCCAGTGCGGTGACCCACGGCCTGGGCGCGATCGC
CGCACTGGCCGGTGGCTCGGTCCTGATCACCCTGGCCGCGATCTACGGCGATGGCTGGCAGCTGGCCACCACCATCGTTT
TCAGTGCCACGCTGATCCTGCTGTATGTCGCATCCACGCTGTTCCATGCCATCCCGCACGTGGGTGCCAAGGCCCGCCTG
CAGGTGCTCGATCACTGCGCGATCTATCTGCTCATTGCAGGCACCTACACGCCGTTTATGCTGATCAACCTGCGTGGGCC
ATGGGGCTGGAGCCTGTTCGCTGCGATCTGGACCATTGCCGCAGCGGGCGTGATCTTCAAGCTGTTTTTCACCGGCCGCT
TCCGGCTGTTGTCGACCATCCTTTACCTGGCAATGGGCTGGCTGATCATCGTGGCGATCAAGCCGCTGCTGGCGGCGGTC
GACACCTGGTCTCTATGCTGGCTGCTCGCCGGCGGGCTCTTCTATACGTTGGGCACCTACTTCTACCAACGCGACACGCA
GCGCTATTTCCACGCCATCTGGCATCTGTTCGTGCTCGCCGGCAGCGCTTGCCACTTTGTGGCGGTGACCGCGCAAATCG
TGTGA

Upstream 100 bases:

>100_bases
CGCCTACGCCACGGCGGTCGATTGACCGCCACTTGAATCGCCACAAGCCAGCGCCACCGCTGGCGATGCGATTTGCGCGC
GGTTACGGTACCTTTTGGGC

Downstream 100 bases:

>100_bases
CCGATGGCGCGTTCGCGCGCCGTGCACGAGGCTTCGCCAACCATGGGTCGGGTGACTACCCCGACAGCTTCCATCGCCGC
CCGCCCTTCCCGCCAACCAC

Product: hemolysin III

Products: NA

Alternate protein names: Hemolysin III; Hly-III [H]

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MNADAPPSTDLRDEIASAVTHGLGAIAALAGGSVLITLAAIYGDGWQLATTIVFSATLILLYVASTLFHAIPHVGAKARL
QVLDHCAIYLLIAGTYTPFMLINLRGPWGWSLFAAIWTIAAAGVIFKLFFTGRFRLLSTILYLAMGWLIIVAIKPLLAAV
DTWSLCWLLAGGLFYTLGTYFYQRDTQRYFHAIWHLFVLAGSACHFVAVTAQIV

Sequences:

>Translated_214_residues
MNADAPPSTDLRDEIASAVTHGLGAIAALAGGSVLITLAAIYGDGWQLATTIVFSATLILLYVASTLFHAIPHVGAKARL
QVLDHCAIYLLIAGTYTPFMLINLRGPWGWSLFAAIWTIAAAGVIFKLFFTGRFRLLSTILYLAMGWLIIVAIKPLLAAV
DTWSLCWLLAGGLFYTLGTYFYQRDTQRYFHAIWHLFVLAGSACHFVAVTAQIV
>Mature_214_residues
MNADAPPSTDLRDEIASAVTHGLGAIAALAGGSVLITLAAIYGDGWQLATTIVFSATLILLYVASTLFHAIPHVGAKARL
QVLDHCAIYLLIAGTYTPFMLINLRGPWGWSLFAAIWTIAAAGVIFKLFFTGRFRLLSTILYLAMGWLIIVAIKPLLAAV
DTWSLCWLLAGGLFYTLGTYFYQRDTQRYFHAIWHLFVLAGSACHFVAVTAQIV

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=221, Percent_Identity=30.7692307692308, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI154759277, Length=245, Percent_Identity=27.7551020408163, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI52630445, Length=224, Percent_Identity=29.4642857142857, Blast_Score=93, Evalue=1e-19,
Organism=Escherichia coli, GI1789266, Length=201, Percent_Identity=44.7761194029851, Blast_Score=169, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI71996356, Length=210, Percent_Identity=31.9047619047619, Blast_Score=95, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24640324, Length=240, Percent_Identity=27.9166666666667, Blast_Score=75, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 23295; Mature: 23295

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNADAPPSTDLRDEIASAVTHGLGAIAALAGGSVLITLAAIYGDGWQLATTIVFSATLIL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LYVASTLFHAIPHVGAKARLQVLDHCAIYLLIAGTYTPFMLINLRGPWGWSLFAAIWTIA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH
AAGVIFKLFFTGRFRLLSTILYLAMGWLIIVAIKPLLAAVDTWSLCWLLAGGLFYTLGTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYQRDTQRYFHAIWHLFVLAGSACHFVAVTAQIV
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure
MNADAPPSTDLRDEIASAVTHGLGAIAALAGGSVLITLAAIYGDGWQLATTIVFSATLIL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LYVASTLFHAIPHVGAKARLQVLDHCAIYLLIAGTYTPFMLINLRGPWGWSLFAAIWTIA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH
AAGVIFKLFFTGRFRLLSTILYLAMGWLIIVAIKPLLAAVDTWSLCWLLAGGLFYTLGTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYQRDTQRYFHAIWHLFVLAGSACHFVAVTAQIV
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7495855 [H]