| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
Click here to switch to the map view.
The map label for this gene is dps [C]
Identifier: 66767491
GI number: 66767491
Start: 1403561
End: 1404112
Strand: Reverse
Name: dps [C]
Synonym: XC_1163
Alternate gene names: 66767491
Gene position: 1404112-1403561 (Counterclockwise)
Preceding gene: 66767493
Following gene: 66767490
Centisome position: 27.27
GC content: 64.49
Gene sequence:
>552_bases ATGTCCAAGAAGAAGAACGCAGCAAACAAACCCGCGGCTCCCACTGACGCGTTGCCGGTCGCCGCTCCCTCGGCGCCACA CATCGATATCGGGATTAAGGATGCCGATCGCAAGCAGATCTCCGACGGCCTGGCCCGCTACATGGCCGACGCGTTCACGC TGTACCTGAAGACCCACAACTTCCATTGGAACGTCACCGGGTCGATGTTCAACTCGCTGCACACCATGTTCGAAACCCAG TACACCGAGCAGTGGGGCGCGCTGGACGAAGTGGCCGAGCGCATCCGCGCCCTGGGCTACAACGCACCGGGTTCGTACCG CGAGTTCGTGGCGCTGACCTCGATCCCGGAAGAGCCGGGCCTGAGCGATAGCGCCGACTGGCGCGAGATGGTGCGCCAGC TGGTCAGCGGCAACGAAGCGGTCTGCCGCACCGCCCGCAAGGTGCTGGGCACCGCCGACGACGCCGGCGACGACCCGACC GTGGACCTGCTGACCCAGCGTCTGCAGACCCATGAAAAATACGCCTGGATGCTGCGCTCGCTGCTGCAGTAA
Upstream 100 bases:
>100_bases CGATAGCGCTCATCGATGGAAAAATGTGAAAGATTGAATGACAAGTGATCCTTTAGCCTGTCTATTGTGACGCCATATCA GTTCCTAAGGAGGACCATCC
Downstream 100 bases:
>100_bases ACCCTTCACGCGTAGCCTCCACGGGTTTGTCCAAGGTTTTGCCAAAGGCGCAACCTTGAGCCCTGCCCAACCTTGGCCCC CTGCGCAATTGCCTACCACC
Product: DNA-binding related protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 183; Mature: 182
Protein sequence:
>183_residues MSKKKNAANKPAAPTDALPVAAPSAPHIDIGIKDADRKQISDGLARYMADAFTLYLKTHNFHWNVTGSMFNSLHTMFETQ YTEQWGALDEVAERIRALGYNAPGSYREFVALTSIPEEPGLSDSADWREMVRQLVSGNEAVCRTARKVLGTADDAGDDPT VDLLTQRLQTHEKYAWMLRSLLQ
Sequences:
>Translated_183_residues MSKKKNAANKPAAPTDALPVAAPSAPHIDIGIKDADRKQISDGLARYMADAFTLYLKTHNFHWNVTGSMFNSLHTMFETQ YTEQWGALDEVAERIRALGYNAPGSYREFVALTSIPEEPGLSDSADWREMVRQLVSGNEAVCRTARKVLGTADDAGDDPT VDLLTQRLQTHEKYAWMLRSLLQ >Mature_182_residues SKKKNAANKPAAPTDALPVAAPSAPHIDIGIKDADRKQISDGLARYMADAFTLYLKTHNFHWNVTGSMFNSLHTMFETQY TEQWGALDEVAERIRALGYNAPGSYREFVALTSIPEEPGLSDSADWREMVRQLVSGNEAVCRTARKVLGTADDAGDDPTV DLLTQRLQTHEKYAWMLRSLLQ
Specific function: Unspecifically Binds And Protects DNA From Oxidative Damage Mediated By Hydrogen Peroxide. Iron-Storage Protein. [C]
COG id: COG0783
COG function: function code P; DNA-binding ferritin-like protein (oxidative damage protectant)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dps family [H]
Homologues:
None
Paralogues:
None
Copy number: 6720 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002177 - InterPro: IPR023188 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR008331 [H]
Pfam domain/function: PF00210 Ferritin [H]
EC number: NA
Molecular weight: Translated: 20370; Mature: 20239
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: PS00818 DPS_1 ; PS00819 DPS_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKKNAANKPAAPTDALPVAAPSAPHIDIGIKDADRKQISDGLARYMADAFTLYLKTHN CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHEECC FHWNVTGSMFNSLHTMFETQYTEQWGALDEVAERIRALGYNAPGSYREFVALTSIPEEPG EEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC LSDSADWREMVRQLVSGNEAVCRTARKVLGTADDAGDDPTVDLLTQRLQTHEKYAWMLRS CCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LLQ HHC >Mature Secondary Structure SKKKNAANKPAAPTDALPVAAPSAPHIDIGIKDADRKQISDGLARYMADAFTLYLKTHN CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHEECC FHWNVTGSMFNSLHTMFETQYTEQWGALDEVAERIRALGYNAPGSYREFVALTSIPEEPG EEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC LSDSADWREMVRQLVSGNEAVCRTARKVLGTADDAGDDPTVDLLTQRLQTHEKYAWMLRS CCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LLQ HHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]