| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is gcd [H]
Identifier: 66767403
GI number: 66767403
Start: 1293126
End: 1295600
Strand: Reverse
Name: gcd [H]
Synonym: XC_1075
Alternate gene names: 66767403
Gene position: 1295600-1293126 (Counterclockwise)
Preceding gene: 66767404
Following gene: 66767402
Centisome position: 25.16
GC content: 67.31
Gene sequence:
>2475_bases ATGACTGATCAATCCTCTAAACGCGGGCTCGGCACTTGGCTGTTGGTAGCCTATGCCGTGGTGCTCGCCGTGCTTGGTGC GGCGCTCGCCTATGAAGGCGGGCGCCTGGTGGCCGTTGGCGGCTCCTGGTATTACGTGCTGGCCGGTATCGCCGTGCTGG TGGCCGGTGTGCTGCTGGCACTGGGCAAACGCGCTGGCCTGTGGCTGTTTGGCGCTACGTTGGCGGCCACCATCGTGTGG GCGCTGTGGGAAGTGGGCCTGGATGGCTGGGGCCTGATCCCACGTCTGGCCTGGATCTCGGTGCTCGGCCTGGTGCTGTT GCCGTTCTGGGGCGTGGCGCGGCGGCGCATGCAGCCGTTGTCCGGGCTCGGCTATGTCGTGGTCACCGGCGTGCTGCCGG TGCTGGGTGCGGCGCTGATCCTGTGGCCGCTGCTGGTGCCGCGCAATGTGGAACTGGCCGATGCATCCAAGCAGCCGGCC GATGCGGCAACGCCGTTCAGCCGTGGCAGCGTGCCCAGCCCGGACGGGAACGTGGCGGCCAACCACGATGCCAGTAACTG GACCGCCTACGCCGGTTCCAACCTGTCCAACCATTACACCCCCGGCGCGCAGATCACGCCGGAGAACGTCAAGGGCCTCA AGGTGGCCTGGGAATTCCATACCGGCGATCTCAAGCCGAAGGATTCCAAGCTGGGCTATGCGTTCCAGAACACCCCGCTC AAGGTCGGCGACCTGCTCTACATCTGCACCCCGACCCAGAAGGTGATTGCGGTGGAGGCGGCCAACGGCAAGGAGCGCTG GCGCTTCGACCCGCAGACCAATCCGAAGGCGATGGCCGGCGTGGCCGCCACCACATGCCGCGGCGTGTCGTACTACCAGG CGCCGGAAGGCACTGCCGAGTGCCCGACGCGGATCTTCTGGCCGATGGTCGATGGCCGCCTGGGTGCGCTGGATGCGCAG ACCGGCAAGCTCTGCGCCAGCTTCGGTAACAACGGCTATGTGGACCTCAATGCCGGCACCGGCAACACCAAGCCGGGCTT CGTCGGCCCGACCTCGCCGCCGGTGGTCATGCGCGGTGTGGTGATCCAGCCCACCGGGCAGGTGCGCGACGGTCAGGAAC GCGATGCGCCGTCCGGCGTGGTGCGCGGCTTCGACGCGCTCACCGGCCAGCTGCGCTGGGCCTGGGATCTGGGCAACCCG GCCATCACCGCCGAACCGCCGGCCGGCCAGACCTATACCCGCTCCACCCCGAACGTGTGGTCGCTGATGGCCGCCGATGA CGAGCTGGGGCTGGTGTATCTGCCCACCGGCAACGCTGCCGGCGACTTCTTCGGCAAGGGCCGCACCCCGCAGGAAGAGG AATACACCGCCTCGCTGGTGGCCGTGGATGCGGCAACCGGCAAGGAGCGCTGGCACTTCCGTACCGTCAATCACGATCTG TGGGACTACGACATCGGCCCGCAGCCGAACCTGGTTGATTGGCCGGTTGCCGGCGGTGGCACCCGCCCCGCCGTGATCCA GGCCACCAAGTCCGGCCAGGTGTTCGTGCTCGACCGCGCCACCGGCCAGCCGATCATGCCTGTCAAGCAGATCGCCGTGC CGCAGGGCACCGACCATGGCGACTGGACCGCATCCACCCAGCCGGTGTCGCCGGGCATGCCCAACACCGTGGGTGCGCCC AGCCGTGACTACGAGACCATCGTTGAATCTGACGCGTGGGGCATGACCCCGTTCGACCAGCTCGCTTGCCGCATCGAGTT CAAGAAGCTGCGGTACGAAGGCATGTTCACCCCGCCAAGCCTGCAGGGCTCGCTGTCGTTCACCGGCAACCATGGCGGCA TCAACTGGGGCGGCGTGTCGGTCGATCTGCAGCGCGGCATCATGGTGATGAACAGCAATCGCCTGCCCTATACCGAGCAC GTCTACCCGCGCACGGTGATGAACGAGCTGGGCGTGGTGTCGGTGTTCAACGGCAGCAGCAAGACCAAGGGCTACATGGC GCAGGAAGGCCTGGCCTATGGCGCGCGCAAGGAGCCGTGGATGTCGCCGCTCAACACGCCGTGCGTGGCACCGCCGTGGG GCTATATCTCCGGCGTGGATCTGCGCACGCAGCAGGTGATCTGGCGCCGTCCGCTGGGCACCGGTTACGACCAGGGCCCA ATGGGCATCCCGTCCAAGACCAAGTTCGAGATCGGCACCCCGAACAACAGCGGCTCGCTGGCCACTGCCGGCGGCGTCAC CTTCATCGGTGCCAGCCTGGACAACTTCATCCGCGGCTTTGACACCCGCACCGGCAAGCAGGTCTGGGAGACCCGCGTGC CTGCGGGCCCGCAGGCCGCGCCGCTGAGCTACACCATCGATGGCAAGCAGTACATCGTTGCCGCGGTGGGTGGCCATGAC CGCATGGAAACCAAGTCCGGCGACAGCGTCATTGCCTGGGCACTGCCCGACGACGCGGCCGCCAGCGCCAAATAA
Upstream 100 bases:
>100_bases GTTCATATCCAGGTGCGGCCGCTTTCGCCAGTCCGCTGCCTCTCTCCCTCCACGACCTGCACCGTTTGTTTGGTGCCCGG GTCCTTCCTGATAACTCAAA
Downstream 100 bases:
>100_bases CGTCTGAGGTTGTGCAGTGACGTTGAACCGGCCGTCGCAAGACGGCCGGTTTTTTTGTGCGTGCCTGAAGAGCGCCGCGC TCCGAGGGGCACTTTCCGCC
Product: glucose dehydrogenase
Products: NA
Alternate protein names: Glucose dehydrogenase [pyrroloquinoline-quinone] [H]
Number of amino acids: Translated: 824; Mature: 823
Protein sequence:
>824_residues MTDQSSKRGLGTWLLVAYAVVLAVLGAALAYEGGRLVAVGGSWYYVLAGIAVLVAGVLLALGKRAGLWLFGATLAATIVW ALWEVGLDGWGLIPRLAWISVLGLVLLPFWGVARRRMQPLSGLGYVVVTGVLPVLGAALILWPLLVPRNVELADASKQPA DAATPFSRGSVPSPDGNVAANHDASNWTAYAGSNLSNHYTPGAQITPENVKGLKVAWEFHTGDLKPKDSKLGYAFQNTPL KVGDLLYICTPTQKVIAVEAANGKERWRFDPQTNPKAMAGVAATTCRGVSYYQAPEGTAECPTRIFWPMVDGRLGALDAQ TGKLCASFGNNGYVDLNAGTGNTKPGFVGPTSPPVVMRGVVIQPTGQVRDGQERDAPSGVVRGFDALTGQLRWAWDLGNP AITAEPPAGQTYTRSTPNVWSLMAADDELGLVYLPTGNAAGDFFGKGRTPQEEEYTASLVAVDAATGKERWHFRTVNHDL WDYDIGPQPNLVDWPVAGGGTRPAVIQATKSGQVFVLDRATGQPIMPVKQIAVPQGTDHGDWTASTQPVSPGMPNTVGAP SRDYETIVESDAWGMTPFDQLACRIEFKKLRYEGMFTPPSLQGSLSFTGNHGGINWGGVSVDLQRGIMVMNSNRLPYTEH VYPRTVMNELGVVSVFNGSSKTKGYMAQEGLAYGARKEPWMSPLNTPCVAPPWGYISGVDLRTQQVIWRRPLGTGYDQGP MGIPSKTKFEIGTPNNSGSLATAGGVTFIGASLDNFIRGFDTRTGKQVWETRVPAGPQAAPLSYTIDGKQYIVAAVGGHD RMETKSGDSVIAWALPDDAAASAK
Sequences:
>Translated_824_residues MTDQSSKRGLGTWLLVAYAVVLAVLGAALAYEGGRLVAVGGSWYYVLAGIAVLVAGVLLALGKRAGLWLFGATLAATIVW ALWEVGLDGWGLIPRLAWISVLGLVLLPFWGVARRRMQPLSGLGYVVVTGVLPVLGAALILWPLLVPRNVELADASKQPA DAATPFSRGSVPSPDGNVAANHDASNWTAYAGSNLSNHYTPGAQITPENVKGLKVAWEFHTGDLKPKDSKLGYAFQNTPL KVGDLLYICTPTQKVIAVEAANGKERWRFDPQTNPKAMAGVAATTCRGVSYYQAPEGTAECPTRIFWPMVDGRLGALDAQ TGKLCASFGNNGYVDLNAGTGNTKPGFVGPTSPPVVMRGVVIQPTGQVRDGQERDAPSGVVRGFDALTGQLRWAWDLGNP AITAEPPAGQTYTRSTPNVWSLMAADDELGLVYLPTGNAAGDFFGKGRTPQEEEYTASLVAVDAATGKERWHFRTVNHDL WDYDIGPQPNLVDWPVAGGGTRPAVIQATKSGQVFVLDRATGQPIMPVKQIAVPQGTDHGDWTASTQPVSPGMPNTVGAP SRDYETIVESDAWGMTPFDQLACRIEFKKLRYEGMFTPPSLQGSLSFTGNHGGINWGGVSVDLQRGIMVMNSNRLPYTEH VYPRTVMNELGVVSVFNGSSKTKGYMAQEGLAYGARKEPWMSPLNTPCVAPPWGYISGVDLRTQQVIWRRPLGTGYDQGP MGIPSKTKFEIGTPNNSGSLATAGGVTFIGASLDNFIRGFDTRTGKQVWETRVPAGPQAAPLSYTIDGKQYIVAAVGGHD RMETKSGDSVIAWALPDDAAASAK >Mature_823_residues TDQSSKRGLGTWLLVAYAVVLAVLGAALAYEGGRLVAVGGSWYYVLAGIAVLVAGVLLALGKRAGLWLFGATLAATIVWA LWEVGLDGWGLIPRLAWISVLGLVLLPFWGVARRRMQPLSGLGYVVVTGVLPVLGAALILWPLLVPRNVELADASKQPAD AATPFSRGSVPSPDGNVAANHDASNWTAYAGSNLSNHYTPGAQITPENVKGLKVAWEFHTGDLKPKDSKLGYAFQNTPLK VGDLLYICTPTQKVIAVEAANGKERWRFDPQTNPKAMAGVAATTCRGVSYYQAPEGTAECPTRIFWPMVDGRLGALDAQT GKLCASFGNNGYVDLNAGTGNTKPGFVGPTSPPVVMRGVVIQPTGQVRDGQERDAPSGVVRGFDALTGQLRWAWDLGNPA ITAEPPAGQTYTRSTPNVWSLMAADDELGLVYLPTGNAAGDFFGKGRTPQEEEYTASLVAVDAATGKERWHFRTVNHDLW DYDIGPQPNLVDWPVAGGGTRPAVIQATKSGQVFVLDRATGQPIMPVKQIAVPQGTDHGDWTASTQPVSPGMPNTVGAPS RDYETIVESDAWGMTPFDQLACRIEFKKLRYEGMFTPPSLQGSLSFTGNHGGINWGGVSVDLQRGIMVMNSNRLPYTEHV YPRTVMNELGVVSVFNGSSKTKGYMAQEGLAYGARKEPWMSPLNTPCVAPPWGYISGVDLRTQQVIWRRPLGTGYDQGPM GIPSKTKFEIGTPNNSGSLATAGGVTFIGASLDNFIRGFDTRTGKQVWETRVPAGPQAAPLSYTIDGKQYIVAAVGGHDR METKSGDSVIAWALPDDAAASAK
Specific function: GDH is probably involved in energy conservation rather than in sugar metabolism [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=813, Percent_Identity=40.590405904059, Blast_Score=575, Evalue=1e-165,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017511 - InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.5.2 [H]
Molecular weight: Translated: 87916; Mature: 87784
Theoretical pI: Translated: 7.54; Mature: 7.54
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDQSSKRGLGTWLLVAYAVVLAVLGAALAYEGGRLVAVGGSWYYVLAGIAVLVAGVLLA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH LGKRAGLWLFGATLAATIVWALWEVGLDGWGLIPRLAWISVLGLVLLPFWGVARRRMQPL HCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SGLGYVVVTGVLPVLGAALILWPLLVPRNVELADASKQPADAATPFSRGSVPSPDGNVAA CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE NHDASNWTAYAGSNLSNHYTPGAQITPENVKGLKVAWEFHTGDLKPKDSKLGYAFQNTPL CCCCCCEEEECCCCCCCCCCCCCEECCCCCCCEEEEEEEECCCCCCCCCCCCEEECCCCE KVGDLLYICTPTQKVIAVEAANGKERWRFDPQTNPKAMAGVAATTCRGVSYYQAPEGTAE EECCEEEEECCCCEEEEEEECCCCHHEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCC CPTRIFWPMVDGRLGALDAQTGKLCASFGNNGYVDLNAGTGNTKPGFVGPTSPPVVMRGV CCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE VIQPTGQVRDGQERDAPSGVVRGFDALTGQLRWAWDLGNPAITAEPPAGQTYTRSTPNVW EECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEECCCCCCCCCCCCCCCEE SLMAADDELGLVYLPTGNAAGDFFGKGRTPQEEEYTASLVAVDAATGKERWHFRTVNHDL EEEECCCCCCEEEEECCCCCCCCCCCCCCCCCHHHEEEEEEEECCCCCCCEEEEECCCCC WDYDIGPQPNLVDWPVAGGGTRPAVIQATKSGQVFVLDRATGQPIMPVKQIAVPQGTDHG CCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHCCCCCCCCC DWTASTQPVSPGMPNTVGAPSRDYETIVESDAWGMTPFDQLACRIEFKKLRYEGMFTPPS CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHEEEEEEHEEECCCCCCCC LQGSLSFTGNHGGINWGGVSVDLQRGIMVMNSNRLPYTEHVYPRTVMNELGVVSVFNGSS CCCEEEEECCCCCEECCCEEEEECCCEEEEECCCCCCCCCCCHHHHHHHCCEEEEECCCC KTKGYMAQEGLAYGARKEPWMSPLNTPCVAPPWGYISGVDLRTQQVIWRRPLGTGYDQGP CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC MGIPSKTKFEIGTPNNSGSLATAGGVTFIGASLDNFIRGFDTRTGKQVWETRVPAGPQAA CCCCCCCEEEECCCCCCCCEEECCCEEEECCCHHHHHHHCCCCCCHHHHHHCCCCCCCCC PLSYTIDGKQYIVAAVGGHDRMETKSGDSVIAWALPDDAAASAK CEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCC >Mature Secondary Structure TDQSSKRGLGTWLLVAYAVVLAVLGAALAYEGGRLVAVGGSWYYVLAGIAVLVAGVLLA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH LGKRAGLWLFGATLAATIVWALWEVGLDGWGLIPRLAWISVLGLVLLPFWGVARRRMQPL HCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SGLGYVVVTGVLPVLGAALILWPLLVPRNVELADASKQPADAATPFSRGSVPSPDGNVAA CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE NHDASNWTAYAGSNLSNHYTPGAQITPENVKGLKVAWEFHTGDLKPKDSKLGYAFQNTPL CCCCCCEEEECCCCCCCCCCCCCEECCCCCCCEEEEEEEECCCCCCCCCCCCEEECCCCE KVGDLLYICTPTQKVIAVEAANGKERWRFDPQTNPKAMAGVAATTCRGVSYYQAPEGTAE EECCEEEEECCCCEEEEEEECCCCHHEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCC CPTRIFWPMVDGRLGALDAQTGKLCASFGNNGYVDLNAGTGNTKPGFVGPTSPPVVMRGV CCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE VIQPTGQVRDGQERDAPSGVVRGFDALTGQLRWAWDLGNPAITAEPPAGQTYTRSTPNVW EECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEECCCCCCCCCCCCCCCEE SLMAADDELGLVYLPTGNAAGDFFGKGRTPQEEEYTASLVAVDAATGKERWHFRTVNHDL EEEECCCCCCEEEEECCCCCCCCCCCCCCCCCHHHEEEEEEEECCCCCCCEEEEECCCCC WDYDIGPQPNLVDWPVAGGGTRPAVIQATKSGQVFVLDRATGQPIMPVKQIAVPQGTDHG CCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHCCCCCCCCC DWTASTQPVSPGMPNTVGAPSRDYETIVESDAWGMTPFDQLACRIEFKKLRYEGMFTPPS CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHEEEEEEHEEECCCCCCCC LQGSLSFTGNHGGINWGGVSVDLQRGIMVMNSNRLPYTEHVYPRTVMNELGVVSVFNGSS CCCEEEEECCCCCEECCCEEEEECCCEEEEECCCCCCCCCCCHHHHHHHCCEEEEECCCC KTKGYMAQEGLAYGARKEPWMSPLNTPCVAPPWGYISGVDLRTQQVIWRRPLGTGYDQGP CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC MGIPSKTKFEIGTPNNSGSLATAGGVTFIGASLDNFIRGFDTRTGKQVWETRVPAGPQAA CCCCCCCEEEECCCCCCCCEEECCCEEEECCCHHHHHHHCCCCCCHHHHHHCCCCCCCCC PLSYTIDGKQYIVAAVGGHDRMETKSGDSVIAWALPDDAAASAK CEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2228962; 8419307; 8202364; 9278503; 8509415; 8554505 [H]