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The map label for this gene is yagA [C]

Identifier: 66767362

GI number: 66767362

Start: 1247680

End: 1248447

Strand: Reverse

Name: yagA [C]

Synonym: XC_1032

Alternate gene names: 66767362

Gene position: 1248447-1247680 (Counterclockwise)

Preceding gene: 66767363

Following gene: 66767357

Centisome position: 24.25

GC content: 58.2

Gene sequence:

>768_bases
GTGGTTGGCGTGGCTCGCTCGACAGCACGTTATCGGCGCCGTCCCGATCGGGATGAGGAGGTTATTGCGCTGTTGTCCGA
GTTGGCCGAGCGTTTTCCCGAGCGCGGATTTGGAAAGCTTTTTCAGATCATCCGTCGTCGCGGACATCTGTGGAATCACA
AGAGGGTCTGGCGCGTGTACTGCCTGATGAAACTCAATCAACGTCGCCGCAGCAAGCGCCGGGTACCGACGCGTCATCCA
CAGCCGCTGGCATGCGGTGATCGACCCAACGCTGGATGGTCGATCGATTTCATGTCTGATGCGCTATGGGATGGTCGACG
GTTCCGCACGTTCAATATCATCGACGATTTCAGTCGGGAAGCCTTGGCCATCGATGTGGACCTGAATCTTCCGGCTGCCC
GCGTCATCCGCACGTTGGAACGTATCGCAGCTTGGCGCGGCTATCCGAACAAGCTGCGTTTGGACAATGGCCCGGAATTT
GTTGCATTGGCCTTGGCCGAGTGGGCTGAGCGCAAGGGTATCGCGTTGGATTTCATCGAGCCGGGGCGTCCGATGCAGAA
CGGTTTTATCGAACGCTTCAACGGCAGCTACCGGCGTGGCGTATTGGATATGCACATATTCCGCACGCTGAGCGAGGTCC
GCGAACAGACCGAACAGTGGCTGGCCGACTACAACCAACAAATACCGCACGACAGCCTGGGCGGGCTAACGCCCGCCGAG
TTCCGTGAGCAACATCAACCGCAGACCTCTAGCTTTATCTGGCATTGA

Upstream 100 bases:

>100_bases
AGGATGTCATCGCAAAAAAGCTGTAGACCCGGCGCATAAGCGCCCGCTTCTTGCCTGGCTCATCGAGCAGCATGGCTGGA
GCGAGCGCCGGGCTTGTGCG

Downstream 100 bases:

>100_bases
ATTGCGGGGAGTCGACAGCGCGGCTGGTGAACTCCGGGCCGTTGTCCGTGCGCACCGCGCGGGGATAGCCGCGGAAGCAG
GCGATCTGCTCCAGCACACG

Product: ISxcc1 transposase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MVGVARSTARYRRRPDRDEEVIALLSELAERFPERGFGKLFQIIRRRGHLWNHKRVWRVYCLMKLNQRRRSKRRVPTRHP
QPLACGDRPNAGWSIDFMSDALWDGRRFRTFNIIDDFSREALAIDVDLNLPAARVIRTLERIAAWRGYPNKLRLDNGPEF
VALALAEWAERKGIALDFIEPGRPMQNGFIERFNGSYRRGVLDMHIFRTLSEVREQTEQWLADYNQQIPHDSLGGLTPAE
FREQHQPQTSSFIWH

Sequences:

>Translated_255_residues
MVGVARSTARYRRRPDRDEEVIALLSELAERFPERGFGKLFQIIRRRGHLWNHKRVWRVYCLMKLNQRRRSKRRVPTRHP
QPLACGDRPNAGWSIDFMSDALWDGRRFRTFNIIDDFSREALAIDVDLNLPAARVIRTLERIAAWRGYPNKLRLDNGPEF
VALALAEWAERKGIALDFIEPGRPMQNGFIERFNGSYRRGVLDMHIFRTLSEVREQTEQWLADYNQQIPHDSLGGLTPAE
FREQHQPQTSSFIWH
>Mature_255_residues
MVGVARSTARYRRRPDRDEEVIALLSELAERFPERGFGKLFQIIRRRGHLWNHKRVWRVYCLMKLNQRRRSKRRVPTRHP
QPLACGDRPNAGWSIDFMSDALWDGRRFRTFNIIDDFSREALAIDVDLNLPAARVIRTLERIAAWRGYPNKLRLDNGPEF
VALALAEWAERKGIALDFIEPGRPMQNGFIERFNGSYRRGVLDMHIFRTLSEVREQTEQWLADYNQQIPHDSLGGLTPAE
FREQHQPQTSSFIWH

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=171, Percent_Identity=26.9005847953216, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 30078; Mature: 30078

Theoretical pI: Translated: 10.82; Mature: 10.82

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGVARSTARYRRRPDRDEEVIALLSELAERFPERGFGKLFQIIRRRGHLWNHKRVWRVY
CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
CLMKLNQRRRSKRRVPTRHPQPLACGDRPNAGWSIDFMSDALWDGRRFRTFNIIDDFSRE
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCCCCEEEECHHHHCCCC
ALAIDVDLNLPAARVIRTLERIAAWRGYPNKLRLDNGPEFVALALAEWAERKGIALDFIE
EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEECC
PGRPMQNGFIERFNGSYRRGVLDMHIFRTLSEVREQTEQWLADYNQQIPHDSLGGLTPAE
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
FREQHQPQTSSFIWH
HHHHCCCCCCCCCCC
>Mature Secondary Structure
MVGVARSTARYRRRPDRDEEVIALLSELAERFPERGFGKLFQIIRRRGHLWNHKRVWRVY
CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
CLMKLNQRRRSKRRVPTRHPQPLACGDRPNAGWSIDFMSDALWDGRRFRTFNIIDDFSRE
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCCCCEEEECHHHHCCCC
ALAIDVDLNLPAARVIRTLERIAAWRGYPNKLRLDNGPEFVALALAEWAERKGIALDFIE
EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEECC
PGRPMQNGFIERFNGSYRRGVLDMHIFRTLSEVREQTEQWLADYNQQIPHDSLGGLTPAE
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
FREQHQPQTSSFIWH
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]