| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is aldH [H]
Identifier: 66767285
GI number: 66767285
Start: 1145120
End: 1146700
Strand: Reverse
Name: aldH [H]
Synonym: XC_0953
Alternate gene names: 66767285
Gene position: 1146700-1145120 (Counterclockwise)
Preceding gene: 66767286
Following gene: 66767284
Centisome position: 22.27
GC content: 68.82
Gene sequence:
>1581_bases ATGCACGCGATCCTGGGTGAATCGTTGATCGGCCAGCGCAGCGTGCAGGGTGCCGGCGTTGCCTTGCAGGGCATGGATGC GGCCACGGGCGAGGCGCTGCAACCTATGTTCGGCTCGGCCACCGCGCCGGATGTGGAGCAGGCCTGCGCGCTGGCGCAAG CGGCCTTCGATCCTTACCGCGAGACCACGCTGGAGGCACGTGCGCAGTTTCTGGAGACCATCGCCGAGCAGATCCTGGCG CTGGGCGATGGCTTGATCGAACGGGCCATGCGCGAAAGCGGCCTGCCGCGTGCACGCCTGGAAGGCGAGCGTGGGCGCAC CGTGGGCCAGCTACGCCTGTTCGCCAGCGTAGTCCGCGAAGGCAGCTGGCTGCAGGCGCGCATCGACCCGGCACTGCCGC AGCGCACGCCGTTGCCGCGTGCAGACCTGCGCCAGCGGCACATTGCGCTGGGGCCGGTGGCGGTGTTCGGCGCCAGCAAT TTCCCGCTTGCGTTTTCGGTGGCTGGCGGCGATACCGCCTCGGCGTTGGCCGCCGGTTGCCCGGTGGTGGTCAAGGCGCA CAGCGCGCATCCGGGTACCTCCGAACTGGTGGGCCGCGCGATCCAGGCGGCGGTGGCGCAGTGCGGGTTGCCGGAGGGTG TGTTCTCGCTGTTGTTCGATGCCGGCATCGAGATTGGCGCGCAACTGGTCGCCGATGCGCGGATCAAGGCGGTGGGGTTC ACCGGCTCGCGCGCCGGAGGCATGGCGCTGATACAGATTGCCGCCGCACGCCGCGAGCCGATTCCGGTGTATGCGGAAAT GAGCGCGATCAACCCGGTGTATCTGCTGCCGCAGGCGTTACAGGCACGCGCACCGGATCTGGGCAAAGCGTTTGTCGGCT CGCTGACCTTGGGCGCGGGCCAGTTCTGCACCAATCCCGGTCTGCTGCTGGCGATCGATTCGCCGGCGCTGGATGCGTTC ATCGCATCGGCAACGCAAACGCTGCAGGCGGTGTCGCCGGCAGCAATGCTCACCGCAGGCATCGGCCAGGCCTATGCGCA GGGCGTGCAGCGTCTGGCCGCGCATCCGAAGGTCAGCACACTGGCACGTGGTGCCGCACCGGAAGCCGGGCGCTGCCCTG CGGCATTGTTCGGCACCGATGCCGACGCATTTTTGGCCGATGAAGCGCTGCAGGCCGAAGTGTTCGGTGCGTCGTCGCTG CTGGTGCGCTGCAAGGACGGCGCGCAGTTGCGTGCGCTGAGCGAACACCTGGAGGGGCAACTCACCGCCACCGTGCACAT GGCGGCAGACGACATGGCGCTGGCCGCATCCCTGCTGCCGGTGCTGGAGCGCAAGGCCGGCCGCATCCTGTTCAACGATT GGCCCACCGGCGTGGAGGTCTGCCACGCCATGGTGCACGGCGGCCCGTTCCCGGCCACCTCCGACAGCCGCAGCACCTCG GTGGGCACGCTGGCGATCGACCGCTTCCTGCGCCCGGTCTGCTACCAAGACCTCCCGGCCGAACTGCTGCCCGCGGCCGT GGCAGATGGCAATCCACTCAAGTTATGGCGACGCGTCGATGGCGCGCTGGGACACGACTGA
Upstream 100 bases:
>100_bases GTGCCGTGGGTCGCCCGGCCGGCCCGGTACGTACGCCGCTGGCCGATCTGACCGAAGACGAATTCGCCCAGCCCACGCAG CTCATCGGAGGGCGCCGCTG
Downstream 100 bases:
>100_bases GCACGCTGCACACGCCCATGCCTGAGGCATGCCGGAGGAGGGTCCGGCACGCCATCCCCAGGCGCCCTGAAGTATCGAAG CGCATTGCGCTTCCATCGTC
Product: ketoglutarate semialdehyde dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 526; Mature: 526
Protein sequence:
>526_residues MHAILGESLIGQRSVQGAGVALQGMDAATGEALQPMFGSATAPDVEQACALAQAAFDPYRETTLEARAQFLETIAEQILA LGDGLIERAMRESGLPRARLEGERGRTVGQLRLFASVVREGSWLQARIDPALPQRTPLPRADLRQRHIALGPVAVFGASN FPLAFSVAGGDTASALAAGCPVVVKAHSAHPGTSELVGRAIQAAVAQCGLPEGVFSLLFDAGIEIGAQLVADARIKAVGF TGSRAGGMALIQIAAARREPIPVYAEMSAINPVYLLPQALQARAPDLGKAFVGSLTLGAGQFCTNPGLLLAIDSPALDAF IASATQTLQAVSPAAMLTAGIGQAYAQGVQRLAAHPKVSTLARGAAPEAGRCPAALFGTDADAFLADEALQAEVFGASSL LVRCKDGAQLRALSEHLEGQLTATVHMAADDMALAASLLPVLERKAGRILFNDWPTGVEVCHAMVHGGPFPATSDSRSTS VGTLAIDRFLRPVCYQDLPAELLPAAVADGNPLKLWRRVDGALGHD
Sequences:
>Translated_526_residues MHAILGESLIGQRSVQGAGVALQGMDAATGEALQPMFGSATAPDVEQACALAQAAFDPYRETTLEARAQFLETIAEQILA LGDGLIERAMRESGLPRARLEGERGRTVGQLRLFASVVREGSWLQARIDPALPQRTPLPRADLRQRHIALGPVAVFGASN FPLAFSVAGGDTASALAAGCPVVVKAHSAHPGTSELVGRAIQAAVAQCGLPEGVFSLLFDAGIEIGAQLVADARIKAVGF TGSRAGGMALIQIAAARREPIPVYAEMSAINPVYLLPQALQARAPDLGKAFVGSLTLGAGQFCTNPGLLLAIDSPALDAF IASATQTLQAVSPAAMLTAGIGQAYAQGVQRLAAHPKVSTLARGAAPEAGRCPAALFGTDADAFLADEALQAEVFGASSL LVRCKDGAQLRALSEHLEGQLTATVHMAADDMALAASLLPVLERKAGRILFNDWPTGVEVCHAMVHGGPFPATSDSRSTS VGTLAIDRFLRPVCYQDLPAELLPAAVADGNPLKLWRRVDGALGHD >Mature_526_residues MHAILGESLIGQRSVQGAGVALQGMDAATGEALQPMFGSATAPDVEQACALAQAAFDPYRETTLEARAQFLETIAEQILA LGDGLIERAMRESGLPRARLEGERGRTVGQLRLFASVVREGSWLQARIDPALPQRTPLPRADLRQRHIALGPVAVFGASN FPLAFSVAGGDTASALAAGCPVVVKAHSAHPGTSELVGRAIQAAVAQCGLPEGVFSLLFDAGIEIGAQLVADARIKAVGF TGSRAGGMALIQIAAARREPIPVYAEMSAINPVYLLPQALQARAPDLGKAFVGSLTLGAGQFCTNPGLLLAIDSPALDAF IASATQTLQAVSPAAMLTAGIGQAYAQGVQRLAAHPKVSTLARGAAPEAGRCPAALFGTDADAFLADEALQAEVFGASSL LVRCKDGAQLRALSEHLEGQLTATVHMAADDMALAASLLPVLERKAGRILFNDWPTGVEVCHAMVHGGPFPATSDSRSTS VGTLAIDRFLRPVCYQDLPAELLPAAVADGNPLKLWRRVDGALGHD
Specific function: Catalyzes the oxidation of long-chain aliphatic aldehydes to acids. May be implicated in controlling luminescence as it catalyzes the oxidation of the fatty aldehyde substrate for the light-emitting reaction [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldehyde dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI87081896, Length=438, Percent_Identity=27.1689497716895, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1788042, Length=324, Percent_Identity=29.320987654321, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787250, Length=167, Percent_Identity=35.3293413173653, Blast_Score=66, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016161 - InterPro: IPR016163 - InterPro: IPR016162 - InterPro: IPR015590 [H]
Pfam domain/function: PF00171 Aldedh [H]
EC number: =1.2.1.4 [H]
Molecular weight: Translated: 54520; Mature: 54520
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHAILGESLIGQRSVQGAGVALQGMDAATGEALQPMFGSATAPDVEQACALAQAAFDPYR CCCCCCHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCHHH ETTLEARAQFLETIAEQILALGDGLIERAMRESGLPRARLEGERGRTVGQLRLFASVVRE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHC GSWLQARIDPALPQRTPLPRADLRQRHIALGPVAVFGASNFPLAFSVAGGDTASALAAGC CCEEEEECCCCCCCCCCCCHHHHHHHHHEECCEEEECCCCCCEEEEECCCCHHHHHHCCC PVVVKAHSAHPGTSELVGRAIQAAVAQCGLPEGVFSLLFDAGIEIGAQLVADARIKAVGF CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEC TGSRAGGMALIQIAAARREPIPVYAEMSAINPVYLLPQALQARAPDLGKAFVGSLTLGAG CCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHCCCHHHHCCCCCHHHHHHHHHCCCCC QFCTNPGLLLAIDSPALDAFIASATQTLQAVSPAAMLTAGIGQAYAQGVQRLAAHPKVST CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHH LARGAAPEAGRCPAALFGTDADAFLADEALQAEVFGASSLLVRCKDGAQLRALSEHLEGQ HHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCC LTATVHMAADDMALAASLLPVLERKAGRILFNDWPTGVEVCHAMVHGGPFPATSDSRSTS EEEEEEECHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC VGTLAIDRFLRPVCYQDLPAELLPAAVADGNPLKLWRRVDGALGHD HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCCC >Mature Secondary Structure MHAILGESLIGQRSVQGAGVALQGMDAATGEALQPMFGSATAPDVEQACALAQAAFDPYR CCCCCCHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCHHH ETTLEARAQFLETIAEQILALGDGLIERAMRESGLPRARLEGERGRTVGQLRLFASVVRE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHC GSWLQARIDPALPQRTPLPRADLRQRHIALGPVAVFGASNFPLAFSVAGGDTASALAAGC CCEEEEECCCCCCCCCCCCHHHHHHHHHEECCEEEECCCCCCEEEEECCCCHHHHHHCCC PVVVKAHSAHPGTSELVGRAIQAAVAQCGLPEGVFSLLFDAGIEIGAQLVADARIKAVGF CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEC TGSRAGGMALIQIAAARREPIPVYAEMSAINPVYLLPQALQARAPDLGKAFVGSLTLGAG CCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHCCCHHHHCCCCCHHHHHHHHHCCCCC QFCTNPGLLLAIDSPALDAFIASATQTLQAVSPAAMLTAGIGQAYAQGVQRLAAHPKVST CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHH LARGAAPEAGRCPAALFGTDADAFLADEALQAEVFGASSLLVRCKDGAQLRALSEHLEGQ HHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCC LTATVHMAADDMALAASLLPVLERKAGRILFNDWPTGVEVCHAMVHGGPFPATSDSRSTS EEEEEEECHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC VGTLAIDRFLRPVCYQDLPAELLPAAVADGNPLKLWRRVDGALGHD HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8527447; 10903148 [H]