BacMap

Definition	Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome.
Accession	NC_007086
Length	5,148,708

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The map label for this gene is gudP [H]

Identifier: 66767284

GI number: 66767284

Start: 1143641

End: 1145005

Strand: Reverse

Name: gudP [H]

Synonym: XC_0952

Alternate gene names: 66767284

Gene position: 1145005-1143641 (Counterclockwise)

Preceding gene: 66767285

Following gene: 66767283

Centisome position: 22.24

GC content: 63.37

Gene sequence:

>1365_bases
ATGATGGCTCCCGATTCGAAGACAGTTCCGCGCAGGCGTTATCTGATCTTGCTGATGTTGTTCGTGGTGACCACGATCAA
CTATGCGGACCGCGCCACCTTGTCCATTGCCGGCTCCGCCGTGCAGGACTCGCTGGGCATCGATGCACTGCAGATGGGTT
TCATTTTCTCGGCATTCGGCTGGGCATACGTGGCCGGGCAGATTCCGGGAGGCTGGTTGCTCGACCGCTTCGGCTCACGG
CGCGTGTATGGCCTGTCCCTGCTGACCTGGTCGCTGTTCACCGTGCTGCAGGGATTCATCGGCTGGGTGCCGGTGGCCTG
GGCGGTCACCACCTTGTTCGTGCTGCGCTTTCTGGTGGGCATCGCCGAAGCGCCCTCGTTCCCCGGTAATAGCCGCATCG
TGGCGGCATGGTTTCCCACGGCCGAACGCGGCTTGGCCGCCTCGATCTTCAACTCCGCACAGTACTTCGCCACCGTGGCC
TTCGCGCCGCTGATGGGCTGGCTGGTGCATGCCTGGGGCTGGGAGCACGTGTTCCTGGTGATGGGCGCGGCCGGCGTGCT
GCTGGCCGCGCTGTGGAGAAAGACCATCTATGCACCGCGCGAGCACCCGCGTTTGTCGGCGCAGGAACTGGACTACATCC
AGCGCAACGGTGCACTGGTGGACATGGAGCAACGCAACACGCCTAGCCAGCACGTCAAGGGAGCGCAATGGCATTACGCC
AAGCAACTGCTGGGCAATCGCATGTTGCTCGGCGTGTACATCGGCCAGTACTGCATCACCACGCTGACGTACTTCTTTTT
GACCTGGTTCCCGGTGTATCTGGTCAAGGAGCGTGGCATGTCGATCCTGGAGGCAGGCTTCGTTGCCTCGCTGCCGGCGG
TGTGCGGCTTCATCGGCGGCGTGCTGGGCGGTTACGTGTCCGATCGCATGGTGCGGCGCGGCTACTCGCTCACCGTGGCG
CGCAAGACGCCGATCGTGGTTGGCATGTTGATGTCGGTGACGATGATCGGCTGCAACTACGTGCAGGCCGAATGGATGGT
GGTCGGCTTGATGGCGCTGGCGTTCTTCGGCAAAGGCATTGGCGCGCTCGGCTGGGCGGTGGTGGCCGATACCTCGCCCA
AGGAAATCGCAGGGCTCTCGGGCGGCCTGTTCAACACCTTCGGCAACATGGCCGGCATCACCACGCCGATCGTGATCGGC
TACATCGTCTCCAACACCGGCACCTTCGAGTGGGCCCTGGTGTTCGTTGGATTCAATGCCTTGCTGGCGGTGGTGTCGTA
CCTGGTGGTGGTCGGCCAAATCAAGCGGGTGGAGCTCAAGGCGCCGCCTGGCGGCCCATCCATGCCCCTTCCTGCAGCGC
TGTGA

Upstream 100 bases:

>100_bases
CCCATGCCTGAGGCATGCCGGAGGAGGGTCCGGCACGCCATCCCCAGGCGCCCTGAAGTATCGAAGCGCATTGCGCTTCC
ATCGTCATAGGTGAGGAAAG

Downstream 100 bases:

>100_bases
CTCACGCGGAGATCCTTCAATGAACATCCATTCTTCAAGTGCGCGCAGCAGCGCGACACCACGCATCACCGACGTGCGCG
TGGTGCCGGTCGCCGGGCAG

Product: glucarate transporter

Products: NA

Alternate protein names: D-glucarate permease [H]

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MMAPDSKTVPRRRYLILLMLFVVTTINYADRATLSIAGSAVQDSLGIDALQMGFIFSAFGWAYVAGQIPGGWLLDRFGSR
RVYGLSLLTWSLFTVLQGFIGWVPVAWAVTTLFVLRFLVGIAEAPSFPGNSRIVAAWFPTAERGLAASIFNSAQYFATVA
FAPLMGWLVHAWGWEHVFLVMGAAGVLLAALWRKTIYAPREHPRLSAQELDYIQRNGALVDMEQRNTPSQHVKGAQWHYA
KQLLGNRMLLGVYIGQYCITTLTYFFLTWFPVYLVKERGMSILEAGFVASLPAVCGFIGGVLGGYVSDRMVRRGYSLTVA
RKTPIVVGMLMSVTMIGCNYVQAEWMVVGLMALAFFGKGIGALGWAVVADTSPKEIAGLSGGLFNTFGNMAGITTPIVIG
YIVSNTGTFEWALVFVGFNALLAVVSYLVVVGQIKRVELKAPPGGPSMPLPAAL

Sequences:

>Translated_454_residues
MMAPDSKTVPRRRYLILLMLFVVTTINYADRATLSIAGSAVQDSLGIDALQMGFIFSAFGWAYVAGQIPGGWLLDRFGSR
RVYGLSLLTWSLFTVLQGFIGWVPVAWAVTTLFVLRFLVGIAEAPSFPGNSRIVAAWFPTAERGLAASIFNSAQYFATVA
FAPLMGWLVHAWGWEHVFLVMGAAGVLLAALWRKTIYAPREHPRLSAQELDYIQRNGALVDMEQRNTPSQHVKGAQWHYA
KQLLGNRMLLGVYIGQYCITTLTYFFLTWFPVYLVKERGMSILEAGFVASLPAVCGFIGGVLGGYVSDRMVRRGYSLTVA
RKTPIVVGMLMSVTMIGCNYVQAEWMVVGLMALAFFGKGIGALGWAVVADTSPKEIAGLSGGLFNTFGNMAGITTPIVIG
YIVSNTGTFEWALVFVGFNALLAVVSYLVVVGQIKRVELKAPPGGPSMPLPAAL
>Mature_454_residues
MMAPDSKTVPRRRYLILLMLFVVTTINYADRATLSIAGSAVQDSLGIDALQMGFIFSAFGWAYVAGQIPGGWLLDRFGSR
RVYGLSLLTWSLFTVLQGFIGWVPVAWAVTTLFVLRFLVGIAEAPSFPGNSRIVAAWFPTAERGLAASIFNSAQYFATVA
FAPLMGWLVHAWGWEHVFLVMGAAGVLLAALWRKTIYAPREHPRLSAQELDYIQRNGALVDMEQRNTPSQHVKGAQWHYA
KQLLGNRMLLGVYIGQYCITTLTYFFLTWFPVYLVKERGMSILEAGFVASLPAVCGFIGGVLGGYVSDRMVRRGYSLTVA
RKTPIVVGMLMSVTMIGCNYVQAEWMVVGLMALAFFGKGIGALGWAVVADTSPKEIAGLSGGLFNTFGNMAGITTPIVIG
YIVSNTGTFEWALVFVGFNALLAVVSYLVVVGQIKRVELKAPPGGPSMPLPAAL

Specific function: Uptake of D-glucarate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]

Homologues:

Organism=Homo sapiens, GI9966811, Length=431, Percent_Identity=25.754060324826, Blast_Score=125, Evalue=9e-29,
Organism=Homo sapiens, GI9945322, Length=431, Percent_Identity=26.4501160092807, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI6912666, Length=411, Percent_Identity=25.5474452554745, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI21322234, Length=454, Percent_Identity=24.8898678414097, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI148743791, Length=391, Percent_Identity=25.8312020460358, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI4885441, Length=371, Percent_Identity=26.4150943396226, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI5031955, Length=274, Percent_Identity=26.6423357664234, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI154350196, Length=422, Percent_Identity=22.9857819905213, Blast_Score=93, Evalue=7e-19,
Organism=Homo sapiens, GI223718438, Length=221, Percent_Identity=26.6968325791855, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI148728191, Length=326, Percent_Identity=24.8466257668712, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI154800443, Length=281, Percent_Identity=24.5551601423488, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI256219598, Length=411, Percent_Identity=21.4111922141119, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI4503847, Length=411, Percent_Identity=21.4111922141119, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI256219483, Length=411, Percent_Identity=21.4111922141119, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI256219543, Length=305, Percent_Identity=23.2786885245902, Blast_Score=66, Evalue=5e-11,
Organism=Escherichia coli, GI1789152, Length=446, Percent_Identity=63.9013452914798, Blast_Score=592, Evalue=1e-170,
Organism=Escherichia coli, GI1789515, Length=436, Percent_Identity=62.3853211009174, Blast_Score=573, Evalue=1e-165,
Organism=Escherichia coli, GI87082320, Length=440, Percent_Identity=41.5909090909091, Blast_Score=358, Evalue=1e-100,
Organism=Escherichia coli, GI2367379, Length=431, Percent_Identity=29.0023201856148, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI2367193, Length=332, Percent_Identity=26.8072289156627, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1788573, Length=454, Percent_Identity=24.2290748898678, Blast_Score=81, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI115533556, Length=432, Percent_Identity=26.6203703703704, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI115533554, Length=435, Percent_Identity=26.4367816091954, Blast_Score=117, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17552542, Length=448, Percent_Identity=23.4375, Blast_Score=99, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17560030, Length=382, Percent_Identity=24.6073298429319, Blast_Score=88, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI71989129, Length=320, Percent_Identity=27.8125, Blast_Score=85, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI71991448, Length=377, Percent_Identity=23.0769230769231, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71991453, Length=377, Percent_Identity=23.0769230769231, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17535049, Length=410, Percent_Identity=21.219512195122, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17554148, Length=384, Percent_Identity=25.5208333333333, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI32565914, Length=388, Percent_Identity=21.1340206185567, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71997452, Length=433, Percent_Identity=21.7090069284065, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI25141316, Length=370, Percent_Identity=21.8918918918919, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI25141318, Length=370, Percent_Identity=21.8918918918919, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI32565916, Length=268, Percent_Identity=22.0149253731343, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17570335, Length=451, Percent_Identity=22.8381374722838, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17569727, Length=413, Percent_Identity=22.5181598062954, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193205400, Length=383, Percent_Identity=21.4099216710183, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI25141341, Length=386, Percent_Identity=22.020725388601, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17537329, Length=271, Percent_Identity=25.4612546125461, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193207426, Length=437, Percent_Identity=21.9679633867277, Blast_Score=71, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI25145964, Length=354, Percent_Identity=22.0338983050847, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI25151055, Length=249, Percent_Identity=24.4979919678715, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115534592, Length=232, Percent_Identity=25, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17532009, Length=433, Percent_Identity=20.7852193995381, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24648416, Length=428, Percent_Identity=26.1682242990654, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI21356189, Length=428, Percent_Identity=26.1682242990654, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24583789, Length=410, Percent_Identity=29.2682926829268, Blast_Score=128, Evalue=7e-30,
Organism=Drosophila melanogaster, GI24641682, Length=425, Percent_Identity=26.8235294117647, Blast_Score=125, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24639764, Length=431, Percent_Identity=25.754060324826, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24584153, Length=391, Percent_Identity=25.8312020460358, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24655271, Length=469, Percent_Identity=24.9466950959488, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI28573708, Length=446, Percent_Identity=25.5605381165919, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI28573707, Length=446, Percent_Identity=25.5605381165919, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI20130135, Length=469, Percent_Identity=24.9466950959488, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI62484226, Length=427, Percent_Identity=25.7611241217799, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI45550460, Length=424, Percent_Identity=25.7075471698113, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI20130167, Length=435, Percent_Identity=24.8275862068966, Blast_Score=102, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24654215, Length=460, Percent_Identity=27.1739130434783, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI19922400, Length=453, Percent_Identity=27.1523178807947, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI20129235, Length=375, Percent_Identity=26.9333333333333, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI28573299, Length=454, Percent_Identity=26.2114537444934, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24655255, Length=374, Percent_Identity=26.4705882352941, Blast_Score=96, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24580790, Length=396, Percent_Identity=25.2525252525253, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24653727, Length=382, Percent_Identity=25.3926701570681, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24658658, Length=464, Percent_Identity=23.4913793103448, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24658696, Length=471, Percent_Identity=26.3269639065817, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI45550364, Length=442, Percent_Identity=25.1131221719457, Blast_Score=75, Evalue=8e-14,
Organism=Drosophila melanogaster, GI19920686, Length=425, Percent_Identity=21.8823529411765, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI45550495, Length=438, Percent_Identity=22.3744292237443, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24658674, Length=433, Percent_Identity=22.4018475750577, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281361682, Length=377, Percent_Identity=23.342175066313, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24658666, Length=431, Percent_Identity=22.5058004640371, Blast_Score=70, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221474708, Length=168, Percent_Identity=29.7619047619048, Blast_Score=69, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004744
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 49403; Mature: 49403

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAPDSKTVPRRRYLILLMLFVVTTINYADRATLSIAGSAVQDSLGIDALQMGFIFSAFG
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCHHHHHHHHHHHHHH
WAYVAGQIPGGWLLDRFGSRRVYGLSLLTWSLFTVLQGFIGWVPVAWAVTTLFVLRFLVG
HHHHCCCCCCCHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAEAPSFPGNSRIVAAWFPTAERGLAASIFNSAQYFATVAFAPLMGWLVHAWGWEHVFLV
HHCCCCCCCCCEEEEEECCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
MGAAGVLLAALWRKTIYAPREHPRLSAQELDYIQRNGALVDMEQRNTPSQHVKGAQWHYA
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHCCCCHHHHH
KQLLGNRMLLGVYIGQYCITTLTYFFLTWFPVYLVKERGMSILEAGFVASLPAVCGFIGG
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
VLGGYVSDRMVRRGYSLTVARKTPIVVGMLMSVTMIGCNYVQAEWMVVGLMALAFFGKGI
HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCH
GALGWAVVADTSPKEIAGLSGGLFNTFGNMAGITTPIVIGYIVSNTGTFEWALVFVGFNA
HHHHEEEEECCCHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
LLAVVSYLVVVGQIKRVELKAPPGGPSMPLPAAL
HHHHHHHHHHHHCHHEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MMAPDSKTVPRRRYLILLMLFVVTTINYADRATLSIAGSAVQDSLGIDALQMGFIFSAFG
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCHHHHHHHHHHHHHH
WAYVAGQIPGGWLLDRFGSRRVYGLSLLTWSLFTVLQGFIGWVPVAWAVTTLFVLRFLVG
HHHHCCCCCCCHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAEAPSFPGNSRIVAAWFPTAERGLAASIFNSAQYFATVAFAPLMGWLVHAWGWEHVFLV
HHCCCCCCCCCEEEEEECCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
MGAAGVLLAALWRKTIYAPREHPRLSAQELDYIQRNGALVDMEQRNTPSQHVKGAQWHYA
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHCCCCHHHHH
KQLLGNRMLLGVYIGQYCITTLTYFFLTWFPVYLVKERGMSILEAGFVASLPAVCGFIGG
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
VLGGYVSDRMVRRGYSLTVARKTPIVVGMLMSVTMIGCNYVQAEWMVVGLMALAFFGKGI
HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCH
GALGWAVVADTSPKEIAGLSGGLFNTFGNMAGITTPIVIGYIVSNTGTFEWALVFVGFNA
HHHHEEEEECCCHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
LLAVVSYLVVVGQIKRVELKAPPGGPSMPLPAAL
HHHHHHHHHHHHCHHEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7704254; 9384377 [H]