Click here to switch to the map view.

The map label for this gene is ychA [C]

Identifier: 66767229

GI number: 66767229

Start: 1081697

End: 1082578

Strand: Reverse

Name: ychA [C]

Synonym: XC_0897

Alternate gene names: 66767229

Gene position: 1082578-1081697 (Counterclockwise)

Preceding gene: 66767230

Following gene: 66767227

Centisome position: 21.03

GC content: 67.23

Gene sequence:

>882_bases
TTGAACCCCGCGCCGCTTGCCGACACTCTTGTCGTCATGGTCGACATGCTCCCACTTCCCCATTGGACCGCGCTCGCCAG
CCTGGACGACGACGCGGTGCCGCTGATGTCCACCGCGCTACTGATCGCGCGCGACGAGTATCCGCAGCTGGACGCCGAGC
TGTATGACACGCTCGTGCAAAGCCATGTGGAGCACTTGCGACGCGAGGTCGACGCAATCGATCTGTGGCCGCTGAAGATG
GCCGCGGTGAACCGCTACCTGTTCGACGAGCTGGGCTACTCGGGTAACCACGACGAGTACTACGACCCGCGCAACAGCTA
CCTCAACGAAGTGTTCGAGCGCCGGCTGGGCAACCCGATTTCGCTGGCGATGGTGCAGATCGAAGTCGCGCGCCGGCTGG
GCATTCCGTTGGCCGGGGTGTCGTTCCCAGGGCACTTCCTGGTACGCCTGCCGGTAGACGACGGGGTGCTGGTGATGGAT
CCGTTCAACGGCGGCCGCCCGCTGGGCGTGGACGAGCTGCGTGAACGCGCGCGCCCGCATCTGGGCGGGGAAATCCCCGA
CGACCGCGCATTGGCGCAGATCCTGGACCCGGCGCCGCACCGGGCGATCCTGATCCGCATCCTGCGCAACCTGTATGGCG
TCTACGCCGATGCCGAGCATTGGGACCGCGCCGCCCGCAGCGCCGACCGCATTCTCAAGCTGGTGCCGGACCAGCCCGAA
GCGCTGCGCGATCGCGGCATGGCGTATCTGCACCTCGGGCACCGCAGCGGCGCCCGCCACGACCTGGCGCGTTACCTGCA
GCTGCACCCCAGCGCGCAGGACGCCGCAAGCCTGCATGAGCACCTGGTTGAATTGAACAGCCAGCGCTCACGCGCGCACT
AG

Upstream 100 bases:

>100_bases
CTCGACCTGCGTGACGGGGCCGAGCTTACTTTCAGCCCGGATATTCCCAAGCTGAAGTGATTCACAGCGATGCGGTGTCT
CCTGTCAGGAAGTGCCGGAC

Downstream 100 bases:

>100_bases
GTACTCACTGCGCACTACGCACTGCTCAGCGCTGCAGGGCACCGCAGGCAGCATCAGGCCGGTTGCGCAGACGCCTTGCG
GCGCTGCGCATGCAGGCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MNPAPLADTLVVMVDMLPLPHWTALASLDDDAVPLMSTALLIARDEYPQLDAELYDTLVQSHVEHLRREVDAIDLWPLKM
AAVNRYLFDELGYSGNHDEYYDPRNSYLNEVFERRLGNPISLAMVQIEVARRLGIPLAGVSFPGHFLVRLPVDDGVLVMD
PFNGGRPLGVDELRERARPHLGGEIPDDRALAQILDPAPHRAILIRILRNLYGVYADAEHWDRAARSADRILKLVPDQPE
ALRDRGMAYLHLGHRSGARHDLARYLQLHPSAQDAASLHEHLVELNSQRSRAH

Sequences:

>Translated_293_residues
MNPAPLADTLVVMVDMLPLPHWTALASLDDDAVPLMSTALLIARDEYPQLDAELYDTLVQSHVEHLRREVDAIDLWPLKM
AAVNRYLFDELGYSGNHDEYYDPRNSYLNEVFERRLGNPISLAMVQIEVARRLGIPLAGVSFPGHFLVRLPVDDGVLVMD
PFNGGRPLGVDELRERARPHLGGEIPDDRALAQILDPAPHRAILIRILRNLYGVYADAEHWDRAARSADRILKLVPDQPE
ALRDRGMAYLHLGHRSGARHDLARYLQLHPSAQDAASLHEHLVELNSQRSRAH
>Mature_293_residues
MNPAPLADTLVVMVDMLPLPHWTALASLDDDAVPLMSTALLIARDEYPQLDAELYDTLVQSHVEHLRREVDAIDLWPLKM
AAVNRYLFDELGYSGNHDEYYDPRNSYLNEVFERRLGNPISLAMVQIEVARRLGIPLAGVSFPGHFLVRLPVDDGVLVMD
PFNGGRPLGVDELRERARPHLGGEIPDDRALAQILDPAPHRAILIRILRNLYGVYADAEHWDRAARSADRILKLVPDQPE
ALRDRGMAYLHLGHRSGARHDLARYLQLHPSAQDAASLHEHLVELNSQRSRAH

Specific function: Unknown

COG id: COG2912

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI16306500, Length=227, Percent_Identity=30.3964757709251, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI16306502, Length=194, Percent_Identity=31.4432989690722, Blast_Score=86, Evalue=3e-17,
Organism=Escherichia coli, GI1787465, Length=274, Percent_Identity=25.1824817518248, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33039; Mature: 33039

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPAPLADTLVVMVDMLPLPHWTALASLDDDAVPLMSTALLIARDEYPQLDAELYDTLVQ
CCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH
SHVEHLRREVDAIDLWPLKMAAVNRYLFDELGYSGNHDEYYDPRNSYLNEVFERRLGNPI
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCH
SLAMVQIEVARRLGIPLAGVSFPGHFLVRLPVDDGVLVMDPFNGGRPLGVDELRERARPH
HHHHHHHHHHHHHCCCEECCCCCCEEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHCCC
LGGEIPDDRALAQILDPAPHRAILIRILRNLYGVYADAEHWDRAARSADRILKLVPDQPE
CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHH
ALRDRGMAYLHLGHRSGARHDLARYLQLHPSAQDAASLHEHLVELNSQRSRAH
HHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNPAPLADTLVVMVDMLPLPHWTALASLDDDAVPLMSTALLIARDEYPQLDAELYDTLVQ
CCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH
SHVEHLRREVDAIDLWPLKMAAVNRYLFDELGYSGNHDEYYDPRNSYLNEVFERRLGNPI
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCH
SLAMVQIEVARRLGIPLAGVSFPGHFLVRLPVDDGVLVMDPFNGGRPLGVDELRERARPH
HHHHHHHHHHHHHCCCEECCCCCCEEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHCCC
LGGEIPDDRALAQILDPAPHRAILIRILRNLYGVYADAEHWDRAARSADRILKLVPDQPE
CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHH
ALRDRGMAYLHLGHRSGARHDLARYLQLHPSAQDAASLHEHLVELNSQRSRAH
HHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]