| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is yabI [H]
Identifier: 66767209
GI number: 66767209
Start: 1056170
End: 1058251
Strand: Reverse
Name: yabI [H]
Synonym: XC_0877
Alternate gene names: 66767209
Gene position: 1058251-1056170 (Counterclockwise)
Preceding gene: 66767213
Following gene: 66767204
Centisome position: 20.55
GC content: 68.4
Gene sequence:
>2082_bases ATGAACTCATGGATCGACGCCACGCTGGAGTGGATCGGACACCACCCCACCTTGGCTGGCGTGGTGATCTTTGCGATTGC CTTCTGCGATGCGGTCATCGTGCTGGGCGCCATCGTGCCCGCGTTGCCGCTGTTGTTCGCCATTGGCGTGTTGATCGGGC TTGGCCAGATCAACGGGCCCTATGCGGTGATCTGCGCCACGTTGGGCGCCTTCATCGGTGACGCGCTGAGCTTCTGGGTG GGCCATCGCTGGGGCCACCAACTGCACACCTATTGGCCGTTCCGCCGCTACCCGCAATTGCTGGAGCGCGGCGAATTGTT GTTCCGGCGCAATGCGTTCAAGAGCATCGTGATCGCGCGCTACGTGGGGGCGGTGCGTCCGTTCGTGCCGGCCATCGCCG GCATGTCGCACATGCCGTTCAAACGCTATCTGATCGCCAGTGGGCTGGCCTGCATCTCGTGGGCGTTGCTGTTCCTGGTA CCCGGCTGGGTGTTGGGCACTGCGTATGACGCGGTGGCCGCGGTGGCCGGCCGGTTGTTCGTGGTGGTGGCGCTGCTGGC AGCGGTGATCGGCCTGGCCTGGGCGGTGGTGCTGTATTCGTACCGCTGGTCGGCCGGCCATCTCGACGCGCTGCTGGCAC GGCTGCTGGAGTGGTCGCACCGTCACCCGGTGCTGGGCAACTGGTCGGTGAGCGTGTTCGACCCGCGCCGCCGCGAGTCG GTGCCGCTGGCGATGATGGCGCTGATGCTGCTGTTGCTGGGCTGGGGCTGGTTCGTGCTGTTGATGGTGGTGCTGGCACA CGGCGAGCCGCTGCGCGTGGACCTGGCCGTGCACGATCTGATGCTGGCCCTGCGCAACCCGCTGGCCGACTACCCGATGG TGGCGCTGGCCTCGCTGGGCGATTGGCAGGTGCTGCTGCCGGCGATCGCCGCGGCGATGGGCTACCTGGCCTGGCGTGGG CGCTGGATGGCCGTGACCCACTGGGTGATCGCGCTGGCGTTCGGGCTCGCCTTGACCCAGCTGCTGGGCGCCACCGTGCA GGTGGTGCGCCCACCGGCAGCGAGCAGCGGCTTCGGCTTCCCGTCGGTGGCGGTGACCATGGCCACGATCGGGTTCGGCT TCTTCGCGCTACTGATCGCGCGTGAGCTGCCCGGGCGGCGGCGCGTGTGGCCGTACCTGGTCAGCGGCGCGATCGTGTCG CTGATCGGGTTCGCGCGGTTGTACCTGGGCGCGCACTGGCTCAGTGACGTGGTCGGCGGCATGTTGTTCGGCATTTTCTG GCTGCTGGTGCTGGGCATCGCCTATCGCCGCCGTGCCACCCGCGCGTTCTGGGTCAAGCCGGTGTCGTGGCTGTTCTACG GCGTGTTCCTGGCCTGTGCGATCGCGTTCGCGCCGCGCAATCTGGTGGCCAAACTCGCCAAGTTCGAACCACCACCGCCG CTGTTGATGGAATTGCAGGTCAGCGATTGGTGGAGCGGCCAGTGGCGTCTGCTGCCGGCCCGCCGTAATGAGTTCGACGA CGACCAGCGCTGGCCGCTGGATGTGCAACTCGCCGGCCCGCTGGCACCGCTGCAGCGTCAGCTCGAAGCGCGCGGCTGGC GGGCGCAACCGCAAGCCGGCTGGGAGCAGGCGCTGCATCTGCTGGATGTGAGCGGGCGCCCGGATGAAGTGCCGATCCTG CCGGCCACGCTGGATACGCAGGTCGAAGCCCTGCTGATGGTGCGCCCGGCCGCACCCGGCCATGTGCATGTGTTGCGGCT CTGGCCGGCCACCGCACGACTGCTGCCAGACGCGCAACCGCTGTGGGTCGGCAGCACCCAGACGCTGCGTTACAGCCGGC ATTTCAGCCTGGTCGGGCTGTGGTACCCGCTGCGTGGTGTGGACCCGGCACTGAGCGCCCTGCGCGATGCACTGGGGCCG CTGCCATATCGGGTGGAACAACGTCGGCGCTCGCAGGTGCCGGTGATGCTGATCGACGCAACACCGCACGGCGGCCCGCG GCGTGAGCCCTCTGCAGCGCACCCCGCCACCGCCGCTCAGTCCGAACAGACTGCTGCACAGCGCGATGGGTCACCGCGCT GA
Upstream 100 bases:
>100_bases GCGCGCCTTCACGCGCAGCGTCGCAACCGCAGGTGAAGCGCGCCGGCCGATGTGAGGACCACGCAAGTCAGCCGCCGCCA GGCCCACCTATAATTCGGGG
Downstream 100 bases:
>100_bases TGCGTGGCTGACGCGTGGGAAGCAGGCGGAGGCGGTGAGCAGCCGCGCCACGTTGATGGCTGCACCGTAGAGCCACTGTG TGTGGATTTTTCTCGCACAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 693; Mature: 693
Protein sequence:
>693_residues MNSWIDATLEWIGHHPTLAGVVIFAIAFCDAVIVLGAIVPALPLLFAIGVLIGLGQINGPYAVICATLGAFIGDALSFWV GHRWGHQLHTYWPFRRYPQLLERGELLFRRNAFKSIVIARYVGAVRPFVPAIAGMSHMPFKRYLIASGLACISWALLFLV PGWVLGTAYDAVAAVAGRLFVVVALLAAVIGLAWAVVLYSYRWSAGHLDALLARLLEWSHRHPVLGNWSVSVFDPRRRES VPLAMMALMLLLLGWGWFVLLMVVLAHGEPLRVDLAVHDLMLALRNPLADYPMVALASLGDWQVLLPAIAAAMGYLAWRG RWMAVTHWVIALAFGLALTQLLGATVQVVRPPAASSGFGFPSVAVTMATIGFGFFALLIARELPGRRRVWPYLVSGAIVS LIGFARLYLGAHWLSDVVGGMLFGIFWLLVLGIAYRRRATRAFWVKPVSWLFYGVFLACAIAFAPRNLVAKLAKFEPPPP LLMELQVSDWWSGQWRLLPARRNEFDDDQRWPLDVQLAGPLAPLQRQLEARGWRAQPQAGWEQALHLLDVSGRPDEVPIL PATLDTQVEALLMVRPAAPGHVHVLRLWPATARLLPDAQPLWVGSTQTLRYSRHFSLVGLWYPLRGVDPALSALRDALGP LPYRVEQRRRSQVPVMLIDATPHGGPRREPSAAHPATAAQSEQTAAQRDGSPR
Sequences:
>Translated_693_residues MNSWIDATLEWIGHHPTLAGVVIFAIAFCDAVIVLGAIVPALPLLFAIGVLIGLGQINGPYAVICATLGAFIGDALSFWV GHRWGHQLHTYWPFRRYPQLLERGELLFRRNAFKSIVIARYVGAVRPFVPAIAGMSHMPFKRYLIASGLACISWALLFLV PGWVLGTAYDAVAAVAGRLFVVVALLAAVIGLAWAVVLYSYRWSAGHLDALLARLLEWSHRHPVLGNWSVSVFDPRRRES VPLAMMALMLLLLGWGWFVLLMVVLAHGEPLRVDLAVHDLMLALRNPLADYPMVALASLGDWQVLLPAIAAAMGYLAWRG RWMAVTHWVIALAFGLALTQLLGATVQVVRPPAASSGFGFPSVAVTMATIGFGFFALLIARELPGRRRVWPYLVSGAIVS LIGFARLYLGAHWLSDVVGGMLFGIFWLLVLGIAYRRRATRAFWVKPVSWLFYGVFLACAIAFAPRNLVAKLAKFEPPPP LLMELQVSDWWSGQWRLLPARRNEFDDDQRWPLDVQLAGPLAPLQRQLEARGWRAQPQAGWEQALHLLDVSGRPDEVPIL PATLDTQVEALLMVRPAAPGHVHVLRLWPATARLLPDAQPLWVGSTQTLRYSRHFSLVGLWYPLRGVDPALSALRDALGP LPYRVEQRRRSQVPVMLIDATPHGGPRREPSAAHPATAAQSEQTAAQRDGSPR >Mature_693_residues MNSWIDATLEWIGHHPTLAGVVIFAIAFCDAVIVLGAIVPALPLLFAIGVLIGLGQINGPYAVICATLGAFIGDALSFWV GHRWGHQLHTYWPFRRYPQLLERGELLFRRNAFKSIVIARYVGAVRPFVPAIAGMSHMPFKRYLIASGLACISWALLFLV PGWVLGTAYDAVAAVAGRLFVVVALLAAVIGLAWAVVLYSYRWSAGHLDALLARLLEWSHRHPVLGNWSVSVFDPRRRES VPLAMMALMLLLLGWGWFVLLMVVLAHGEPLRVDLAVHDLMLALRNPLADYPMVALASLGDWQVLLPAIAAAMGYLAWRG RWMAVTHWVIALAFGLALTQLLGATVQVVRPPAASSGFGFPSVAVTMATIGFGFFALLIARELPGRRRVWPYLVSGAIVS LIGFARLYLGAHWLSDVVGGMLFGIFWLLVLGIAYRRRATRAFWVKPVSWLFYGVFLACAIAFAPRNLVAKLAKFEPPPP LLMELQVSDWWSGQWRLLPARRNEFDDDQRWPLDVQLAGPLAPLQRQLEARGWRAQPQAGWEQALHLLDVSGRPDEVPIL PATLDTQVEALLMVRPAAPGHVHVLRLWPATARLLPDAQPLWVGSTQTLRYSRHFSLVGLWYPLRGVDPALSALRDALGP LPYRVEQRRRSQVPVMLIDATPHGGPRREPSAAHPATAAQSEQTAAQRDGSPR
Specific function: Unknown
COG id: COG0671
COG function: function code I; Membrane-associated phospholipid phosphatase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dedA family [H]
Homologues:
Organism=Escherichia coli, GI1786252, Length=164, Percent_Identity=29.8780487804878, Blast_Score=93, Evalue=6e-20, Organism=Escherichia coli, GI1788656, Length=151, Percent_Identity=30.4635761589404, Blast_Score=80, Evalue=6e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015414 [H]
Pfam domain/function: PF09335 SNARE_assoc [H]
EC number: NA
Molecular weight: Translated: 76550; Mature: 76550
Theoretical pI: Translated: 10.39; Mature: 10.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSWIDATLEWIGHHPTLAGVVIFAIAFCDAVIVLGAIVPALPLLFAIGVLIGLGQINGP CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC YAVICATLGAFIGDALSFWVGHRWGHQLHTYWPFRRYPQLLERGELLFRRNAFKSIVIAR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YVGAVRPFVPAIAGMSHMPFKRYLIASGLACISWALLFLVPGWVLGTAYDAVAAVAGRLF HHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVVALLAAVIGLAWAVVLYSYRWSAGHLDALLARLLEWSHRHPVLGNWSVSVFDPRRRES HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC VPLAMMALMLLLLGWGWFVLLMVVLAHGEPLRVDLAVHDLMLALRNPLADYPMVALASLG CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHCCC DWQVLLPAIAAAMGYLAWRGRWMAVTHWVIALAFGLALTQLLGATVQVVRPPAASSGFGF CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCCCCCCC PSVAVTMATIGFGFFALLIARELPGRRRVWPYLVSGAIVSLIGFARLYLGAHWLSDVVGG HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLFGIFWLLVLGIAYRRRATRAFWVKPVSWLFYGVFLACAIAFAPRNLVAKLAKFEPPPP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC LLMELQVSDWWSGQWRLLPARRNEFDDDQRWPLDVQLAGPLAPLQRQLEARGWRAQPQAG CEEEEEECCCCCCCEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCC WEQALHLLDVSGRPDEVPILPATLDTQVEALLMVRPAAPGHVHVLRLWPATARLLPDAQP HHHHHHHHCCCCCCCCCCEECCCHHHHHHHHEEECCCCCCCEEEEEECCHHHHHCCCCCC LWVGSTQTLRYSRHFSLVGLWYPLRGVDPALSALRDALGPLPYRVEQRRRSQVPVMLIDA EECCCCHHEEHHCCEEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEC TPHGGPRREPSAAHPATAAQSEQTAAQRDGSPR CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC >Mature Secondary Structure MNSWIDATLEWIGHHPTLAGVVIFAIAFCDAVIVLGAIVPALPLLFAIGVLIGLGQINGP CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC YAVICATLGAFIGDALSFWVGHRWGHQLHTYWPFRRYPQLLERGELLFRRNAFKSIVIAR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YVGAVRPFVPAIAGMSHMPFKRYLIASGLACISWALLFLVPGWVLGTAYDAVAAVAGRLF HHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVVALLAAVIGLAWAVVLYSYRWSAGHLDALLARLLEWSHRHPVLGNWSVSVFDPRRRES HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC VPLAMMALMLLLLGWGWFVLLMVVLAHGEPLRVDLAVHDLMLALRNPLADYPMVALASLG CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHCCC DWQVLLPAIAAAMGYLAWRGRWMAVTHWVIALAFGLALTQLLGATVQVVRPPAASSGFGF CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCCCCCCC PSVAVTMATIGFGFFALLIARELPGRRRVWPYLVSGAIVSLIGFARLYLGAHWLSDVVGG HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLFGIFWLLVLGIAYRRRATRAFWVKPVSWLFYGVFLACAIAFAPRNLVAKLAKFEPPPP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC LLMELQVSDWWSGQWRLLPARRNEFDDDQRWPLDVQLAGPLAPLQRQLEARGWRAQPQAG CEEEEEECCCCCCCEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCC WEQALHLLDVSGRPDEVPILPATLDTQVEALLMVRPAAPGHVHVLRLWPATARLLPDAQP HHHHHHHHCCCCCCCCCCEECCCHHHHHHHHEEECCCCCCCEEEEEECCHHHHHCCCCCC LWVGSTQTLRYSRHFSLVGLWYPLRGVDPALSALRDALGPLPYRVEQRRRSQVPVMLIDA EECCCCHHEEHHCCEEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEC TPHGGPRREPSAAHPATAAQSEQTAAQRDGSPR CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1630901; 9278503 [H]