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The map label for this gene is ybhD [C]

Identifier: 66767165

GI number: 66767165

Start: 1001091

End: 1001993

Strand: Reverse

Name: ybhD [C]

Synonym: XC_0832

Alternate gene names: 66767165

Gene position: 1001993-1001091 (Counterclockwise)

Preceding gene: 66767170

Following gene: 66767163

Centisome position: 19.46

GC content: 68.99

Gene sequence:

>903_bases
ATGGACCTCGCCAATCTGAGCGCATTCGTGGCGATTGCCGGCCACGGCAGCTTCTCGTCAGCGGCCGAAGCGTTGCATCT
GACCCAACCTGCGGTGAGCAAGCGCATCGCCCTACTGGAAGCGCAATTGTCGGCACGGCTGTTCGACCGCCTGGGCCGCC
AGGTGGTGTTGACCGAGGCCGGGCTGGCGCTGCTGCCGCGCGCGCAGCGCATCCTGGCCGAACTGGACGACACGCGCCGC
GTGCTGGAGCACCTGGGCGCGGCGGTCGGCGGGCGGCTGAGCCTGGCCACCAGTCACCACGTGGGGCTGCACCGGTTGCC
GGCATTGTTGCGACGCTTCGCCGCAGAGCATCCGCAGGCGGCCCTGGACATCCAGTTCCTGGATTCGGAACTGGCTTACG
CGGCGGTGTTGCGCGGCGAGGTGGAACTGGCGGTGACCACACTGGCACCGGACACCCGCGCCCCGTTGCGCGCGCAGCCG
ATCTGGCAAGACCGCCTGCAGTTCGTGGTGGCGCCGGATCACCCGTTGGCCGCGTTGGAGACGGTCACGCTCGATGACGT
GGTCGCCCACCCAGCGGTGCTGCCGGATCCGGGCACCTTCACCCATCGCATCGTGGCCGGGTTGTTCGCCGAACGCGGCC
TGGCGCCGAGCCTGCGCATGACCACCAATTATCTGGAGACGATCAAGATGCTGGTGTTGGTTGGCCTGGCCTGGAGCGTG
CTGCCCGAGCGCATGATCGATCACCAGATCATGGCGCTGCCGTTGGCCGATGTGGCGCTATCGCGTGCGTTGGGATGCGT
CACCCACGGCGGGCGCACCTTGTCGCGCGCGGCGCAGGCGTTCGTGGCGCTGTTGCATACGCAGGCGGATCAGGCGGCAG
GGCTGCGGGGGCTGCCCCGCTGA

Upstream 100 bases:

>100_bases
GGACGGCGGATGCACCGCCTGGCTGAGTCCGATGCTAGGAGCTTGCGTCCGATAACGCAAATTCATATTGTTTATTCAAC
AAATGAAATTTAGGAATGGC

Downstream 100 bases:

>100_bases
CGCTGCGCAAGACCTCACGCTACTGATCGATCAACCGATCGCGTCCCTGCCGTTTGGCGTGATACAGCCTGCGGTCGGCC
AGCGCCAGCAACTCGCGCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MDLANLSAFVAIAGHGSFSSAAEALHLTQPAVSKRIALLEAQLSARLFDRLGRQVVLTEAGLALLPRAQRILAELDDTRR
VLEHLGAAVGGRLSLATSHHVGLHRLPALLRRFAAEHPQAALDIQFLDSELAYAAVLRGEVELAVTTLAPDTRAPLRAQP
IWQDRLQFVVAPDHPLAALETVTLDDVVAHPAVLPDPGTFTHRIVAGLFAERGLAPSLRMTTNYLETIKMLVLVGLAWSV
LPERMIDHQIMALPLADVALSRALGCVTHGGRTLSRAAQAFVALLHTQADQAAGLRGLPR

Sequences:

>Translated_300_residues
MDLANLSAFVAIAGHGSFSSAAEALHLTQPAVSKRIALLEAQLSARLFDRLGRQVVLTEAGLALLPRAQRILAELDDTRR
VLEHLGAAVGGRLSLATSHHVGLHRLPALLRRFAAEHPQAALDIQFLDSELAYAAVLRGEVELAVTTLAPDTRAPLRAQP
IWQDRLQFVVAPDHPLAALETVTLDDVVAHPAVLPDPGTFTHRIVAGLFAERGLAPSLRMTTNYLETIKMLVLVGLAWSV
LPERMIDHQIMALPLADVALSRALGCVTHGGRTLSRAAQAFVALLHTQADQAAGLRGLPR
>Mature_300_residues
MDLANLSAFVAIAGHGSFSSAAEALHLTQPAVSKRIALLEAQLSARLFDRLGRQVVLTEAGLALLPRAQRILAELDDTRR
VLEHLGAAVGGRLSLATSHHVGLHRLPALLRRFAAEHPQAALDIQFLDSELAYAAVLRGEVELAVTTLAPDTRAPLRAQP
IWQDRLQFVVAPDHPLAALETVTLDDVVAHPAVLPDPGTFTHRIVAGLFAERGLAPSLRMTTNYLETIKMLVLVGLAWSV
LPERMIDHQIMALPLADVALSRALGCVTHGGRTLSRAAQAFVALLHTQADQAAGLRGLPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=288, Percent_Identity=27.4305555555556, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788481, Length=287, Percent_Identity=31.0104529616725, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787530, Length=264, Percent_Identity=28.030303030303, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI157672245, Length=295, Percent_Identity=29.8305084745763, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1790399, Length=286, Percent_Identity=25.1748251748252, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787879, Length=289, Percent_Identity=29.0657439446367, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786401, Length=301, Percent_Identity=27.5747508305648, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1790208, Length=294, Percent_Identity=27.2108843537415, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788748, Length=312, Percent_Identity=27.2435897435897, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI87081904, Length=292, Percent_Identity=26.7123287671233, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1787601, Length=251, Percent_Identity=25.0996015936255, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI87082132, Length=291, Percent_Identity=23.7113402061856, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788296, Length=223, Percent_Identity=27.8026905829596, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790262, Length=232, Percent_Identity=27.5862068965517, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI2367136, Length=247, Percent_Identity=26.7206477732794, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787806, Length=291, Percent_Identity=25.7731958762887, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789506, Length=302, Percent_Identity=23.5099337748344, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1786508, Length=177, Percent_Identity=29.3785310734463, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788887, Length=302, Percent_Identity=27.1523178807947, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788626, Length=189, Percent_Identity=32.8042328042328, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788297, Length=244, Percent_Identity=25, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789204, Length=243, Percent_Identity=27.1604938271605, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786713, Length=182, Percent_Identity=29.6703296703297, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787949, Length=195, Percent_Identity=29.2307692307692, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1 [H]

EC number: NA

Molecular weight: Translated: 32212; Mature: 32212

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLANLSAFVAIAGHGSFSSAAEALHLTQPAVSKRIALLEAQLSARLFDRLGRQVVLTEA
CCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
GLALLPRAQRILAELDDTRRVLEHLGAAVGGRLSLATSHHVGLHRLPALLRRFAAEHPQA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCC
ALDIQFLDSELAYAAVLRGEVELAVTTLAPDTRAPLRAQPIWQDRLQFVVAPDHPLAALE
EEEHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCHHHCCEEEECCCCCHHHHH
TVTLDDVVAHPAVLPDPGTFTHRIVAGLFAERGLAPSLRMTTNYLETIKMLVLVGLAWSV
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LPERMIDHQIMALPLADVALSRALGCVTHGGRTLSRAAQAFVALLHTQADQAAGLRGLPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDLANLSAFVAIAGHGSFSSAAEALHLTQPAVSKRIALLEAQLSARLFDRLGRQVVLTEA
CCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
GLALLPRAQRILAELDDTRRVLEHLGAAVGGRLSLATSHHVGLHRLPALLRRFAAEHPQA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCC
ALDIQFLDSELAYAAVLRGEVELAVTTLAPDTRAPLRAQPIWQDRLQFVVAPDHPLAALE
EEEHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCHHHCCEEEECCCCCHHHHH
TVTLDDVVAHPAVLPDPGTFTHRIVAGLFAERGLAPSLRMTTNYLETIKMLVLVGLAWSV
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LPERMIDHQIMALPLADVALSRALGCVTHGGRTLSRAAQAFVALLHTQADQAAGLRGLPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9108283 [H]