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The map label for this gene is vdlD [H]

Identifier: 66048293

GI number: 66048293

Start: 6014454

End: 6014939

Strand: Direct

Name: vdlD [H]

Synonym: Psyr_5069

Alternate gene names: 66048293

Gene position: 6014454-6014939 (Clockwise)

Preceding gene: 66048291

Following gene: 66048295

Centisome position: 98.7

GC content: 59.88

Gene sequence:

>486_bases
ATGGAACCCGGAAACGCCCAGCTGTCGATGACTGTATTGATGACCCCGGACATGGCCAACTTCTCTGGCAACGTACACGG
CGGCACGCTGCTCAAGTACCTGGACGAAGTGGCCTACGCGTGTGCCAGCCGCTACGCCGGGCGCTATGTGGTGACGCTGT
CGGTAGACCAGGTGATTTTCCGTGAGCCGGTGCACGTCGGCGAACTGGTGACCTTTCTCGCCTCGGTCAATTACACCGGC
AACACGTCCATGGAGGTGGGCATCAAGGTGGTCACCGAAAATATCCGCGAGCGCTCGGTACGCCATTCCAACAGCTGCTT
CTTCACCATGGTTGCCGTGGACGACAATCGCAAGCCCGCCAGCGTCCCGCCCCTGGAGCCCGAATCGGCCGATGCCAAGC
GGCGTTTCATCCAGGCGCAGCAACGCCGCCAGATTCGTCAGGAACTGGAAAAGCGCTATCAGGACATCAAGGAAGAAGCG
TTGTAA

Upstream 100 bases:

>100_bases
GCGTGACGGCCGCCTGCTGGCCAGCGTCCCGATAACTGTCGCAAGCCCCCTGAGCGCCAGCATAGGCGCCCCTTGAACAC
CTTGACCGTGTGAGTACGCT

Downstream 100 bases:

>100_bases
GAGGCAGACTCGGGCACGGATGCCCGAGTCGTCGGCAGCAGCCGGGATTTACAGACGCACTGCTTCGAACTTCACCCGCG
GATGCGCGATGCGATCCTGG

Product: thioesterase superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MEPGNAQLSMTVLMTPDMANFSGNVHGGTLLKYLDEVAYACASRYAGRYVVTLSVDQVIFREPVHVGELVTFLASVNYTG
NTSMEVGIKVVTENIRERSVRHSNSCFFTMVAVDDNRKPASVPPLEPESADAKRRFIQAQQRRQIRQELEKRYQDIKEEA
L

Sequences:

>Translated_161_residues
MEPGNAQLSMTVLMTPDMANFSGNVHGGTLLKYLDEVAYACASRYAGRYVVTLSVDQVIFREPVHVGELVTFLASVNYTG
NTSMEVGIKVVTENIRERSVRHSNSCFFTMVAVDDNRKPASVPPLEPESADAKRRFIQAQQRRQIRQELEKRYQDIKEEA
L
>Mature_161_residues
MEPGNAQLSMTVLMTPDMANFSGNVHGGTLLKYLDEVAYACASRYAGRYVVTLSVDQVIFREPVHVGELVTFLASVNYTG
NTSMEVGIKVVTENIRERSVRHSNSCFFTMVAVDDNRKPASVPPLEPESADAKRRFIQAQQRRQIRQELEKRYQDIKEEA
L

Specific function: Unknown

COG id: COG1607

COG function: function code I; Acyl-CoA hydrolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl coenzyme A hydrolase family [H]

Homologues:

Organism=Homo sapiens, GI22165400, Length=144, Percent_Identity=34.7222222222222, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI22165355, Length=144, Percent_Identity=34.7222222222222, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI18640736, Length=144, Percent_Identity=36.1111111111111, Blast_Score=83, Evalue=1e-16,
Organism=Homo sapiens, GI32528284, Length=139, Percent_Identity=33.0935251798561, Blast_Score=83, Evalue=1e-16,
Organism=Homo sapiens, GI32528286, Length=139, Percent_Identity=33.0935251798561, Blast_Score=83, Evalue=1e-16,
Organism=Homo sapiens, GI75709208, Length=139, Percent_Identity=33.0935251798561, Blast_Score=82, Evalue=1e-16,
Organism=Homo sapiens, GI32528282, Length=139, Percent_Identity=33.0935251798561, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006683 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: 3.1.2.- [C]

Molecular weight: Translated: 18143; Mature: 18143

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPGNAQLSMTVLMTPDMANFSGNVHGGTLLKYLDEVAYACASRYAGRYVVTLSVDQVIF
CCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHH
REPVHVGELVTFLASVNYTGNTSMEVGIKVVTENIRERSVRHSNSCFFTMVAVDDNRKPA
HCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCC
SVPPLEPESADAKRRFIQAQQRRQIRQELEKRYQDIKEEAL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEPGNAQLSMTVLMTPDMANFSGNVHGGTLLKYLDEVAYACASRYAGRYVVTLSVDQVIF
CCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHH
REPVHVGELVTFLASVNYTGNTSMEVGIKVVTENIRERSVRHSNSCFFTMVAVDDNRKPA
HCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCC
SVPPLEPESADAKRRFIQAQQRRQIRQELEKRYQDIKEEAL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds; Thiolester hydrolases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]